BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0006.p         (76 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775891.1| two component heavy metal response transcrip...   145   3e-33
ref|YP_995152.1| two component heavy metal response transcriptio...   144   4e-33
ref|YP_004751899.1| DNA-binding heavy metal response regulator [...   133   1e-29
ref|YP_004156915.1| winged helix family two component heavy meta...   130   7e-29
gb|EGP44710.1| two component heavy metal response transcriptiona...   128   3e-28

>ref|YP_003775891.1| two component heavy metal response transcription regulator
          protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63983.1| two component heavy metal response transcription regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/75 (89%), Positives = 72/75 (96%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDE KM+EYLCKGLTEQGC VDLAANG+DGQHLAI+HDYDVIVLDVMLPGLDGF
Sbjct: 1  MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          SVLR+LR VK+TPVI
Sbjct: 61 SVLRALRKVKETPVI 75


>ref|YP_995152.1| two component heavy metal response transcriptional regulator
          [Verminephrobacter eiseniae EF01-2]
 gb|ABM56134.1| two component heavy metal response transcriptional regulator,
          winged helix family [Verminephrobacter eiseniae EF01-2]
          Length = 231

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 71/75 (94%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDEHKMAEYL KGL+EQGCTVDLAANGIDGQHLAI HDYDVIVLD MLPGLDGF
Sbjct: 1  MKILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAMLPGLDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          SVLRSLR +KQTPVI
Sbjct: 61 SVLRSLRILKQTPVI 75


>ref|YP_004751899.1| DNA-binding heavy metal response regulator [Collimonas
          fungivorans Ter331]
 gb|AEK61076.1| DNA-binding heavy metal response regulator [Collimonas
          fungivorans Ter331]
          Length = 229

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 69/75 (92%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDE K A+YLCKGLTEQGC VD+A NG+DGQHLA+QHDYDVIVLDVMLPG+DGF
Sbjct: 1  MKILIVEDELKTADYLCKGLTEQGCAVDVAHNGVDGQHLALQHDYDVIVLDVMLPGIDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          +VL +LR +KQTPVI
Sbjct: 61 TVLHALRAIKQTPVI 75


>ref|YP_004156915.1| winged helix family two component heavy metal response
          transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU38804.1| two component heavy metal response transcriptional regulator,
          winged helix family [Variovorax paradoxus EPS]
          Length = 235

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 67/75 (89%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDE + A+YL KGLTEQGCTVD A NGIDGQHLA+ HDYDVIVLDVMLPG DGF
Sbjct: 1  MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          +VLR+LR VKQTPVI
Sbjct: 61 AVLRALRAVKQTPVI 75


>gb|EGP44710.1| two component heavy metal response transcriptional regulator
          winged helix family protein [Achromobacter xylosoxidans
          AXX-A]
          Length = 228

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 68/75 (90%)

Query: 1  MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60
          MKILIVEDE K A+YL KGL EQGC VD+A NGIDGQHLA++HDYDVIVLD MLPG+DGF
Sbjct: 1  MKILIVEDELKTADYLRKGLGEQGCAVDVAHNGIDGQHLALEHDYDVIVLDAMLPGMDGF 60

Query: 61 SVLRSLRTVKQTPVI 75
          +VLRSLR+V+QTPVI
Sbjct: 61 AVLRSLRSVRQTPVI 75