BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0323.p (472 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775199.1| transmembrane NADH dehydrogenase I subunit M... 827 0.0 ref|YP_004752258.1| NADH-ubiquinone oxidoreductase subunit M [Co... 783 0.0 ref|YP_001100094.1| NADH dehydrogenase I subunit M [Herminiimona... 776 0.0 ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacter... 768 0.0 ref|ZP_08274720.1| NADH-ubiquinone oxidoreductase chain M [Oxalo... 751 0.0 >ref|YP_003775199.1| transmembrane NADH dehydrogenase I subunit M [Herbaspirillum seropedicae SmR1] gb|ADJ63291.1| transmembrane NADH dehydrogenase I (chain M) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 496 Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/471 (88%), Positives = 442/471 (93%) Query: 1 VGRDDNPSVARWLALLGAVVSLLVTIPLVLHFDAAAHGYQFVEKTPWIDRFNISYFLGID 60 +GRD NP +ARWLAL G++V L+VT PL+ HFD AHGYQFVEKTPWIDRFNISYFLG+D Sbjct: 26 LGRDSNPGLARWLALFGSLVGLVVTFPLIQHFDPLAHGYQFVEKTPWIDRFNISYFLGLD 85 Query: 61 GLSLWFIPLTAFITVIVVLAGWEVIQKRVGQYMGAFLILSGLMIGVFSALDGMLFYVFFE 120 G+SLWF+PLTAFITVIVVLAGW VIQKRV QYMGAFLILSG+M+GVFSALD MLFY FFE Sbjct: 86 GISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGAFLILSGIMVGVFSALDAMLFYAFFE 145 Query: 121 ATLIPMFIIVGVWGGANRVYAAFKFFLYTLLGSLLMLIALIYLYIVSGGSFEIPTWHQLP 180 ATLIPMFIIVGVWGG NRVYAAFK FLYTLLGSLLMLIALIYLY VSGGSFEIPTWHQ+P Sbjct: 146 ATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLLMLIALIYLYYVSGGSFEIPTWHQVP 205 Query: 181 LSMIEQKLLFFAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRF 240 LSM+EQK+LFFAFL AFAVKVPMWPVHTWLPDAHV+APTGGSIVLAAIMLKLGAYGFLRF Sbjct: 206 LSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAPTGGSIVLAAIMLKLGAYGFLRF 265 Query: 241 SLPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFN 300 SLPI PDASHALSGFMI LSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFN Sbjct: 266 SLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFN 325 Query: 301 DMAVQGGIAQMISHGFVSGAMFMCIGVLYDRMHTREIAQYGGVVNKMPRFAAFFILFSLA 360 DMAVQGGI QMISHGFVSGAMFMCIGVLYD+MHTREI+QYGGVVNKMPRFA FFILFSLA Sbjct: 326 DMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTREISQYGGVVNKMPRFAFFFILFSLA 385 Query: 361 NCGLPATSGFVGEFMVILGAVKFNFWIGLLSATALILGAAYSLWLTKRVIFGAVTNHHVE 420 NCGLPATSGFVGEFMVILGAVKFNFWIGLL+ATALILGAAYSLWL KRVIFGAVTNHHV Sbjct: 386 NCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILGAAYSLWLAKRVIFGAVTNHHVA 445 Query: 421 ELTDVNKREFFILGLLAIAVLVMGLYPAPVTDTMQTSVSDLLKHVSVSKIG 471 EL D+N REF ILGLLAIA LVMG+YP +TD++QTSV+DLLKHV+VSKI Sbjct: 446 ELVDLNGREFLILGLLAIATLVMGVYPGIITDSIQTSVTDLLKHVAVSKIN 496 >ref|YP_004752258.1| NADH-ubiquinone oxidoreductase subunit M [Collimonas fungivorans Ter331] gb|AEK61435.1| NADH-ubiquinone oxidoreductase chain M [Collimonas fungivorans Ter331] Length = 494 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/471 (81%), Positives = 433/471 (91%) Query: 1 VGRDDNPSVARWLALLGAVVSLLVTIPLVLHFDAAAHGYQFVEKTPWIDRFNISYFLGID 60 VGRDDNP++ RWL+LLGA VS +VT+PLV FD A HG QFVEKT WIDRFN++Y+LGID Sbjct: 24 VGRDDNPTLVRWLSLLGAAVSFVVTLPLVCGFDNAFHGMQFVEKTTWIDRFNVNYYLGID 83 Query: 61 GLSLWFIPLTAFITVIVVLAGWEVIQKRVGQYMGAFLILSGLMIGVFSALDGMLFYVFFE 120 G+SLWF+PLTAFITV+VV++ W+VI+K+V QYMGAFLILSGLMIGVF ALDGMLFYVFFE Sbjct: 84 GISLWFVPLTAFITVLVVISAWQVIEKKVAQYMGAFLILSGLMIGVFCALDGMLFYVFFE 143 Query: 121 ATLIPMFIIVGVWGGANRVYAAFKFFLYTLLGSLLMLIALIYLYIVSGGSFEIPTWHQLP 180 ATL+PMFIIVGVWGGANRVYAA KFFLYTL+GSLLMLIAL+YLYI SGGSFEI TWHQLP Sbjct: 144 ATLVPMFIIVGVWGGANRVYAAIKFFLYTLMGSLLMLIALLYLYIQSGGSFEILTWHQLP 203 Query: 181 LSMIEQKLLFFAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRF 240 L+M Q L+F AFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS+VLAAIMLKLG YGFLRF Sbjct: 204 LTMTAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGGYGFLRF 263 Query: 241 SLPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFN 300 SLPI PDASH L+GF+ITLSL+AVIYIGLVALVQ DMKKL+AYSSIAHMGFVTLGFF+FN Sbjct: 264 SLPITPDASHYLAGFIITLSLIAVIYIGLVALVQNDMKKLIAYSSIAHMGFVTLGFFIFN 323 Query: 301 DMAVQGGIAQMISHGFVSGAMFMCIGVLYDRMHTREIAQYGGVVNKMPRFAAFFILFSLA 360 D+ +QGGI QMISHGFVSGAMF+CIGVLYDRMHTR+IA+YGGVVN MPRFAA F+LFSLA Sbjct: 324 DIGLQGGIVQMISHGFVSGAMFLCIGVLYDRMHTRQIAEYGGVVNVMPRFAALFVLFSLA 383 Query: 361 NCGLPATSGFVGEFMVILGAVKFNFWIGLLSATALILGAAYSLWLTKRVIFGAVTNHHVE 420 N GLP TSGFVGEFMVILGAVKFNFWIGLL+ATALILGAAYSLWL KRV+FGA+TN HV+ Sbjct: 384 NSGLPGTSGFVGEFMVILGAVKFNFWIGLLAATALILGAAYSLWLVKRVVFGAITNSHVK 443 Query: 421 ELTDVNKREFFILGLLAIAVLVMGLYPAPVTDTMQTSVSDLLKHVSVSKIG 471 E+ D+NKREF +LG+LAIAV+ MG+YPAP TD MQ SV+DLLKHV+V+K+ Sbjct: 444 EMLDLNKREFVMLGVLAIAVIAMGVYPAPFTDAMQVSVADLLKHVAVTKLN 494 >ref|YP_001100094.1| NADH dehydrogenase I subunit M [Herminiimonas arsenicoxydans] emb|CAL61969.1| NADH-quinone oxidoreductase subunit M [Herminiimonas arsenicoxydans] Length = 496 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/470 (82%), Positives = 428/470 (91%) Query: 1 VGRDDNPSVARWLALLGAVVSLLVTIPLVLHFDAAAHGYQFVEKTPWIDRFNISYFLGID 60 +GRDDNP+VAR ++L+GA+VS LVT+PL+ FD AAHG QFVEK WID FNI+Y LG+D Sbjct: 26 LGRDDNPNVARSVSLVGAIVSFLVTLPLIQKFDNAAHGMQFVEKFKWIDIFNINYSLGVD 85 Query: 61 GLSLWFIPLTAFITVIVVLAGWEVIQKRVGQYMGAFLILSGLMIGVFSALDGMLFYVFFE 120 GLS+WF+ LTAFIT+ VV+AGWEVI+KRVGQYMGAFLILSGLMIGVF ALDG+LFYVFFE Sbjct: 86 GLSMWFVVLTAFITIFVVIAGWEVIEKRVGQYMGAFLILSGLMIGVFCALDGLLFYVFFE 145 Query: 121 ATLIPMFIIVGVWGGANRVYAAFKFFLYTLLGSLLMLIALIYLYIVSGGSFEIPTWHQLP 180 +TLIPMFII+GVWGGANRVYA+ KFFLYT GSLLML+AL+YLY SG SF+I WH LP Sbjct: 146 STLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLLMLVALLYLYFKSGHSFDILAWHTLP 205 Query: 181 LSMIEQKLLFFAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRF 240 L M Q L+F AFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS+VLAAIMLKLGAYGFLRF Sbjct: 206 LPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 265 Query: 241 SLPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFN 300 SLPI PDASH LSGFMITLSL+AVIYIGLVALVQ+DMKKLVAYSSIAHMGFVTLGFFMFN Sbjct: 266 SLPITPDASHYLSGFMITLSLIAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTLGFFMFN 325 Query: 301 DMAVQGGIAQMISHGFVSGAMFMCIGVLYDRMHTREIAQYGGVVNKMPRFAAFFILFSLA 360 DMAVQGGIAQMISHGFVSGAMF+CIGVLYDRMHTR IA YGGVVN MP+FAAFF+LFS+ Sbjct: 326 DMAVQGGIAQMISHGFVSGAMFLCIGVLYDRMHTRNIADYGGVVNTMPKFAAFFVLFSMG 385 Query: 361 NCGLPATSGFVGEFMVILGAVKFNFWIGLLSATALILGAAYSLWLTKRVIFGAVTNHHVE 420 N GLPATSGFVGEFMVILGAV++NFWIGLL+ATALILGAAYSLWL KRV+FGAV NHHV Sbjct: 386 NAGLPATSGFVGEFMVILGAVQYNFWIGLLAATALILGAAYSLWLAKRVLFGAVANHHVA 445 Query: 421 ELTDVNKREFFILGLLAIAVLVMGLYPAPVTDTMQTSVSDLLKHVSVSKI 470 EL D+NKREF +LGLLAIAVL MGLYPAP TD MQTSV+DLLKHV++SK+ Sbjct: 446 ELKDINKREFLMLGLLAIAVLAMGLYPAPFTDVMQTSVADLLKHVAISKL 495 >ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] gb|ABR88792.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] Length = 496 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/471 (81%), Positives = 421/471 (89%) Query: 1 VGRDDNPSVARWLALLGAVVSLLVTIPLVLHFDAAAHGYQFVEKTPWIDRFNISYFLGID 60 VGRD NP+ R L+L G++VS LVT+P+V FD AAHG QFVEK WID FNI+Y LG+D Sbjct: 26 VGRDTNPNAVRVLSLFGSIVSFLVTLPIVAKFDNAAHGMQFVEKMKWIDIFNINYSLGVD 85 Query: 61 GLSLWFIPLTAFITVIVVLAGWEVIQKRVGQYMGAFLILSGLMIGVFSALDGMLFYVFFE 120 GLS+WF+ LTAFIT+ VV+A WEVI+KRV QYMGAFLILSGLMIGVF ALDG+LFYVFFE Sbjct: 86 GLSMWFVILTAFITIFVVIAAWEVIEKRVAQYMGAFLILSGLMIGVFCALDGLLFYVFFE 145 Query: 121 ATLIPMFIIVGVWGGANRVYAAFKFFLYTLLGSLLMLIALIYLYIVSGGSFEIPTWHQLP 180 +TLIPMFII+GVWGGANRVYA+ KFFLYT GSLLML+AL+YLY SG SF+I WH LP Sbjct: 146 STLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLLMLVALLYLYFKSGHSFDILAWHTLP 205 Query: 181 LSMIEQKLLFFAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRF 240 L M Q L+F AFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS+VLAAIMLKLGAYGFLRF Sbjct: 206 LPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRF 265 Query: 241 SLPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFN 300 SLPI PDASH LSGFMITLSL+AVIYIGLVALVQ DMKKLVAYSSIAHMGFVTLGFFMFN Sbjct: 266 SLPITPDASHYLSGFMITLSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFMFN 325 Query: 301 DMAVQGGIAQMISHGFVSGAMFMCIGVLYDRMHTREIAQYGGVVNKMPRFAAFFILFSLA 360 DMAVQGGI QMISHGFVSGAMF+CIGVLYDRMHTR IA YGGVVN MP+FAAFF+LFS+ Sbjct: 326 DMAVQGGIVQMISHGFVSGAMFLCIGVLYDRMHTRNIADYGGVVNVMPKFAAFFVLFSMG 385 Query: 361 NCGLPATSGFVGEFMVILGAVKFNFWIGLLSATALILGAAYSLWLTKRVIFGAVTNHHVE 420 N GLPATSGFVGEFMVILGAVKFNFWIGLL+ATALILGAAYSLWL KRVIFGA+TNHHV Sbjct: 386 NAGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILGAAYSLWLAKRVIFGAITNHHVS 445 Query: 421 ELTDVNKREFFILGLLAIAVLVMGLYPAPVTDTMQTSVSDLLKHVSVSKIG 471 E+ D+NKREF +LGLLAIAVL MGLYPAP TD MQTSV+DLLKHV++SK+ Sbjct: 446 EMKDLNKREFLMLGLLAIAVLAMGLYPAPFTDAMQTSVTDLLKHVAISKLN 496 >ref|ZP_08274720.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium IMCC9480] gb|EGF31794.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium IMCC9480] Length = 500 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/468 (80%), Positives = 414/468 (88%) Query: 2 GRDDNPSVARWLALLGAVVSLLVTIPLVLHFDAAAHGYQFVEKTPWIDRFNISYFLGIDG 61 GRDDNP + R AL+G+VVS LVT+PL+ FD AAHG QF EK PWI+RFNI YFLGIDG Sbjct: 31 GRDDNPGLVRIAALIGSVVSFLVTLPLIQRFDNAAHGMQFAEKMPWIERFNIQYFLGIDG 90 Query: 62 LSLWFIPLTAFITVIVVLAGWEVIQKRVGQYMGAFLILSGLMIGVFSALDGMLFYVFFEA 121 +SLW + LT+FIT+IVV++ WEVIQK+V QYMGAFLILSGLM+GVF ALDGMLFYVFFEA Sbjct: 91 ISLWLVVLTSFITIIVVISAWEVIQKKVAQYMGAFLILSGLMVGVFCALDGMLFYVFFEA 150 Query: 122 TLIPMFIIVGVWGGANRVYAAFKFFLYTLLGSLLMLIALIYLYIVSGGSFEIPTWHQLPL 181 TLIPMFII+GVWGG NRVYAA KFFLYT GSLLML+AL+YLY SGGSF+I WH LPL Sbjct: 151 TLIPMFIIIGVWGGGNRVYAAIKFFLYTFFGSLLMLVALLYLYFASGGSFDITYWHDLPL 210 Query: 182 SMIEQKLLFFAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSIVLAAIMLKLGAYGFLRFS 241 + Q LF AFLMAFAVKVPMWPVHTWLPDAHVEAPTGGS+VLAAIMLKLGAYGFLRFS Sbjct: 211 PLNVQIPLFLAFLMAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFS 270 Query: 242 LPIAPDASHALSGFMITLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFND 301 LPI PDASH L+ MITLSL+AVIYIGLVALVQ DMKKLVAYSSIAHMGFVTLGFF FND Sbjct: 271 LPITPDASHYLAPMMITLSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFAFND 330 Query: 302 MAVQGGIAQMISHGFVSGAMFMCIGVLYDRMHTREIAQYGGVVNKMPRFAAFFILFSLAN 361 MAVQGGI QM+SHGFVS AMF+CIGVLYDRMHTR IA YGGVVN MP+FAAFF+LFSLAN Sbjct: 331 MAVQGGIVQMVSHGFVSAAMFLCIGVLYDRMHTRAIADYGGVVNTMPKFAAFFVLFSLAN 390 Query: 362 CGLPATSGFVGEFMVILGAVKFNFWIGLLSATALILGAAYSLWLTKRVIFGAVTNHHVEE 421 CGLPATSGFVGEFMVILGA+KFNFWIGLL+ TALI GAAYSLWL KRVIFGAV N V + Sbjct: 391 CGLPATSGFVGEFMVILGAIKFNFWIGLLAGTALIFGAAYSLWLVKRVIFGAVANPQVAK 450 Query: 422 LTDVNKREFFILGLLAIAVLVMGLYPAPVTDTMQTSVSDLLKHVSVSK 469 L D++ REF +LG+LAIAVLVMG+YPAP+TD MQTSV+DLL+HVS+SK Sbjct: 451 LKDLSLREFGMLGVLAIAVLVMGVYPAPITDAMQTSVADLLQHVSISK 498