BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0316.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirill... 833 0.0 ref|YP_004752251.1| NADH-ubiquinone oxidoreductase subunit F [Co... 775 0.0 ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralst... 772 0.0 ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralst... 771 0.0 ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstoni... 770 0.0 >ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirillum seropedicae SmR1] gb|ADJ63284.1| NADH dehydrogenase I (chain F) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/431 (94%), Positives = 423/431 (98%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MTCLHDRHIKPLILADL+G+NWHL DYVKRGGYESLKRIL E ITPEQVIA+LK+SGLRG Sbjct: 1 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGMIIGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEIF AY RFEEALEEARAAGFLGDNILGTGF+FQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIFSAYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFK+G QAYA++GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKK+KAVIPGGSSAPVIRGD Sbjct: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKIKAVIPGGSSAPVIRGD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 VMM+TTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFYYEESCGQCTPCREGTG Sbjct: 301 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 WMYRMVERIENGHGK+EDLDVLNSVADNIQGRTICALGDAAAMPVRAF+KNFREEFEYHI Sbjct: 361 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 420 Query: 421 EHKHCSVPAYI 431 EHKHC VPAYI Sbjct: 421 EHKHCLVPAYI 431 >ref|YP_004752251.1| NADH-ubiquinone oxidoreductase subunit F [Collimonas fungivorans Ter331] gb|AEK61428.1| NADH-ubiquinone oxidoreductase chain F [Collimonas fungivorans Ter331] Length = 431 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/431 (84%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LH+RHI PLILA+LDG NWH ADYVKRGGY +LKRIL+E ITPEQVIAELK+ LRG Sbjct: 1 MTSLHNRHINPLILANLDGDNWHYADYVKRGGYTALKRILSEGITPEQVIAELKAGSLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPHSLIEGM IG YA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMAIGAYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGI+VGYNYIHGEI+ Y RFEEAL+EARAAG LGD I G+ FNFQLH HGYGAYICGE Sbjct: 121 MGISVGYNYIHGEIWSGYERFEEALDEARAAGALGDKIFGSEFNFQLHAFHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ +G AY ++GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLNMGGAAYLELGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGGTKIFSISGDVE+PGNYE+PLGTPF+ L+ELAGGMRGGKK+KAVIPGGSSAPVI+GD Sbjct: 241 NNGGTKIFSISGDVEKPGNYEVPLGTPFAKLMELAGGMRGGKKIKAVIPGGSSAPVIKGD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 VMM+T +DYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFY+EESCGQCTPCREGTG Sbjct: 301 VMMDTDLDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V RIE GHG+ ED+D+L++VA NI GRTICALGDAAAMPVR F+KN+REEFEYHI Sbjct: 361 WLYRLVHRIETGHGRPEDMDLLDTVAGNIMGRTICALGDAAAMPVRGFLKNYREEFEYHI 420 Query: 421 EHKHCSVPAYI 431 EHKHC VPAY+ Sbjct: 421 EHKHCLVPAYV 431 >ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12D] ref|ZP_07676590.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] gb|ACS63167.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12D] gb|EFP65162.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] Length = 431 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/431 (84%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LHDRHI+PLILA L+G NWHL DYVKRGGY+ LKRILTE ITPEQVIA++K+SGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEI++ Y FE+ALEEARAAGFLGDNILG+GFNFQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ IG Y +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKKLKAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFYYEESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 421 EHKHCSVPAYI 431 EHK C VP Y+ Sbjct: 421 EHKQCMVPTYL 431 >ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12J] gb|ACD27343.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12J] Length = 431 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/431 (84%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LHDRHI+PLILA L+G NWHL DYVKRGGY+ LKRILTE ITPEQVIA++K+SGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEI++ Y FE+ALEEARAAGFLGDNILG+GFNFQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ IG Y +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKKLKAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFY+EESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 421 EHKHCSVPAYI 431 EHK C VP YI Sbjct: 421 EHKQCMVPTYI 431 >ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] ref|YP_002259132.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] gb|EAP74177.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] emb|CAQ36045.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2] emb|CAQ61061.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] gb|AEG68677.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum Po82] Length = 431 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/431 (83%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LHDRHI+PLILA L+G NWHL DYVKRGGY+ LKRILTE I+PEQVIA++K+SGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEI++ Y FE+ALEEARAAGFLGDNILG+GFNFQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ IG Y +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKKLKAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFY+EESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 421 EHKHCSVPAYI 431 EHK C VP YI Sbjct: 421 EHKQCMVPTYI 431