BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0314.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalo... 816 0.0 ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirill... 815 0.0 ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas ... 814 0.0 ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacter... 813 0.0 ref|YP_004752249.1| NADH-ubiquinone oxidoreductase subunit D [Co... 810 0.0 >ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium IMCC9480] gb|EGF30334.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium IMCC9480] Length = 417 Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/417 (91%), Positives = 404/417 (96%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKTYLQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHGLD 120 PYMDRLDYVSMMCNEH YVM+IEKLLG+EVPLRAQYIRVMFDEITRLLNHL+W+GAH LD Sbjct: 61 PYMDRLDYVSMMCNEHGYVMSIEKLLGLEVPLRAQYIRVMFDEITRLLNHLLWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPETMPQYKASIIRNDKA 180 VGAMGV LYAFREREDLMDCYEAVSGAR+HAAYYRPGGVYRDLPE MP+Y ASI+RN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPEVMPKYSASILRNAKA 180 Query: 181 IKQLNENRQGSMLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 I QLNENRQGS+LDFIEDFTNRFP+YVDEYETLLTDNRIWKQRLVGVGVVSPERA+AMGF Sbjct: 181 IGQLNENRQGSLLDFIEDFTNRFPRYVDEYETLLTDNRIWKQRLVGVGVVSPERALAMGF 240 Query: 241 SGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIRQCV 300 +GPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVG NGDCYDRYLVRVEEMRQSN+II+QCV Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGVNGDCYDRYLVRVEEMRQSNKIIKQCV 300 Query: 301 EWLRNNPGPVIIDNHKIAPPPRVDMKSNMEDLIHHFKLFTEGFHVPPGETYAAVEHPKGE 360 EWLRNNPGPV+ DNHK+APP RV+MKSNME+LIHHFKLFTEGFHVPPGE YAAVEHPKGE Sbjct: 301 EWLRNNPGPVMTDNHKVAPPSRVNMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRMKIRAPGYAHLQSLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YL+SDGANKPYR+KIRAPG+AHLQ LNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRLKIRAPGFAHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirillum seropedicae SmR1] gb|ADJ63282.1| NADH dehydrogenase I (Chain D) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/417 (92%), Positives = 403/417 (96%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 Query: 61 PYMDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHGLD 120 PYMDRLDYVSMM NEH YV+AIE++LGI+VPLRAQYIRVMFDEITRLLNHLMWIGAH LD Sbjct: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIDVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPETMPQYKASIIRNDKA 180 VGAMGVLLYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP++MPQYKASI+RN+KA Sbjct: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 Query: 181 IKQLNENRQGSMLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 I++LNENRQGS+LDFIEDFTNRFP YVDEYETLLTDNRIWKQRLVGVGVVSPERA+ MGF Sbjct: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 Query: 241 SGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIRQCV 300 SGPMLRGSGI WDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRV EMRQSNRII+QCV Sbjct: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVIIDNHKIAPPPRVDMKSNMEDLIHHFKLFTEGFHVPPGETYAAVEHPKGE 360 EWLRNNPGPVI DNHKIAPP R DMKSNMEDLIHHFKLFTEGF VP GE YAAVEHPKGE Sbjct: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRMKIRAPGYAHLQSLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YLVSDGANKPYR+KIRAPG+AHLQ+LNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas arsenicoxydans] sp|A4G641.1|NUOD_HERAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D emb|CAL61978.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase subunit D) [Herminiimonas arsenicoxydans] Length = 417 Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/417 (92%), Positives = 401/417 (96%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKTYLQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHGLD 120 PYMDRLDYVSMMCNEHAYVM+IEK+L +EVPLRAQYIRVMFDEITR+LNHLMW+GAH LD Sbjct: 61 PYMDRLDYVSMMCNEHAYVMSIEKMLNLEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPETMPQYKASIIRNDKA 180 VGAMGV LYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+KASIIRN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKA 180 Query: 181 IKQLNENRQGSMLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 I +LNENRQGS+LDFIEDFTNRFP YVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF Sbjct: 181 INKLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 Query: 241 SGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIRQCV 300 +GPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVG NGDCYDRYLVRVEEMRQSNRII+QCV Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVIIDNHKIAPPPRVDMKSNMEDLIHHFKLFTEGFHVPPGETYAAVEHPKGE 360 EWLRNNPG V+ DNHK+APP RVDMKSNMEDLIHHFKLFTEGFHVP GE YAAVEHPKGE Sbjct: 301 EWLRNNPGSVMTDNHKVAPPSRVDMKSNMEDLIHHFKLFTEGFHVPVGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRMKIRAPGYAHLQSLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YL+SDGANKPYRMKIRAPG+ HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacterium sp. Marseille] sp|A6SY08.1|NUOD_JANMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gb|ABR88407.1| NADH dehydrogenase I chain D [Janthinobacterium sp. Marseille] Length = 417 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/417 (91%), Positives = 400/417 (95%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKTYLQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHGLD 120 PYMDRLDYVSMMCNEHAYVMAIEK+L IEVPLRAQYIRVMFDEITR+LNHLMW+GAH LD Sbjct: 61 PYMDRLDYVSMMCNEHAYVMAIEKMLNIEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPETMPQYKASIIRNDKA 180 VGAMGV LYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLP+TMPQ+KASIIRN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASIIRNAKA 180 Query: 181 IKQLNENRQGSMLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 I QLNENRQGS+LDFIEDFTNRFP YVDEYETLLTDNRIWKQRLVG+GVVSPERAMAMGF Sbjct: 181 ISQLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAMAMGF 240 Query: 241 SGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIRQCV 300 +G MLRGSG+EWDLRKKQPYEVYDL+DFDIPVG NGDCYDRYLVRVEEMRQSNRII+QCV Sbjct: 241 TGAMLRGSGVEWDLRKKQPYEVYDLMDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVIIDNHKIAPPPRVDMKSNMEDLIHHFKLFTEGFHVPPGETYAAVEHPKGE 360 EWLRNN GPV+ DNHK+APP RV MKSNMEDLIHHFKLFTEGFHVP GE YAAVEHPKGE Sbjct: 301 EWLRNNAGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPTGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRMKIRAPGYAHLQSLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YL+SDGANKPYRMKIRAPG+ HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_004752249.1| NADH-ubiquinone oxidoreductase subunit D [Collimonas fungivorans Ter331] gb|AEK61426.1| NADH-ubiquinone oxidoreductase chain D [Collimonas fungivorans Ter331] Length = 417 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/417 (91%), Positives = 400/417 (95%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHGLD 120 PYMDRLDYVSMMCNEH YVMAIE+LLG+EVPLRAQYIRVMFDEITRLLNHLMWIGAH LD Sbjct: 61 PYMDRLDYVSMMCNEHGYVMAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPETMPQYKASIIRNDKA 180 VGAM VLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLP+TMPQ+KAS++RN KA Sbjct: 121 VGAMAVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASLVRNAKA 180 Query: 181 IKQLNENRQGSMLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 I LNENRQGS+LDFIEDFT RFPKYVDEYETLLTDNRIWKQRLVG+GVVSPERA AMGF Sbjct: 181 ISALNENRQGSLLDFIEDFTVRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERAKAMGF 240 Query: 241 SGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIRQCV 300 +G MLRGSG+EWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRII+QCV Sbjct: 241 TGAMLRGSGVEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVIIDNHKIAPPPRVDMKSNMEDLIHHFKLFTEGFHVPPGETYAAVEHPKGE 360 EWLRNN GPV+ NHK+AP R+DMKSNME+LIHHFKLFTEGFHVPPGE YAAVEHPKGE Sbjct: 301 EWLRNNSGPVMTTNHKVAPSSRIDMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRMKIRAPGYAHLQSLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+Y+VSDGANKPYR+KIRAPG+ HLQ LNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYIVSDGANKPYRLKIRAPGFPHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417