BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0304.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775182.1| allophanate hydrolase subunit 2 [Herbaspiril... 479 e-133 ref|YP_004157290.1| urea amidolyase-like protein [Variovorax par... 398 e-109 ref|YP_002946243.1| urea amidolyase-like protein [Variovorax par... 398 e-109 ref|YP_001859122.1| urea amidolyase-like protein [Burkholderia p... 332 7e-89 ref|YP_004754826.1| allophanate hydrolase subunit 2 [Collimonas ... 328 7e-88 >ref|YP_003775182.1| allophanate hydrolase subunit 2 [Herbaspirillum seropedicae SmR1] gb|ADJ63274.1| allophanate hydrolase subunit 2 protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 242/344 (70%), Positives = 278/344 (80%), Gaps = 8/344 (2%) Query: 1 MIDIIQPGLLTSVQDLGRPGHRRLGINPGGALNPLALSTANLLVGNDVSAAGLEITMGAC 60 MIDIIQPG+L SVQD+GR GHRRLGI+PGGALN LAL++ANLLVGN V AAGLEITMG Sbjct: 1 MIDIIQPGMLASVQDMGRYGHRRLGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA 60 Query: 61 ELRFTTDTRIALGGDDFDARLDDKFLAPYWSTPVRAGQTLRLAHVGRGGAQ-----GMRT 115 ELRFT TRIALGGDD A LD K +A WS PVRAG L+L+ + MRT Sbjct: 61 ELRFTRATRIALGGDDIGATLDGKPIAACWSIPVRAGSILKLSLAAADSPEQAPRHSMRT 120 Query: 116 CLAIAGGIDVPIILGSRSTDLKAGFGGHQGRALRKGDRLPLGDAGVKAT---GPAFGVRS 172 LA+AGGIDVP++LGSRSTDLKAGFGGHQGRAL++GD+LP+GDA A GPAFGVRS Sbjct: 121 YLAVAGGIDVPLVLGSRSTDLKAGFGGHQGRALKRGDKLPIGDAQAAAAAVHGPAFGVRS 180 Query: 173 PQWSGLSAQANDSSKLTTLRVLPGPEFEQFTVAARNTLWQDKWRITPNSNRMGYRLEGSE 232 P+WSGL+ +A++ S+ TLRVLP PEF+QF+ +AR LW D WR+TPNSNRMGYRLEG E Sbjct: 181 PRWSGLALRADEHSQHVTLRVLPAPEFDQFSKSAREALWSDTWRVTPNSNRMGYRLEGPE 240 Query: 233 LKRKQSRDLLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVVIAADMWKLAQAPLN 292 LKRKQ RD+LSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGV+I AD+WKLAQAPLN Sbjct: 241 LKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIGADLWKLAQAPLN 300 Query: 293 GLLQLQLCDLEQALHAWEEQQRYLAHVEQTIAALGWSRATQYRK 336 L+L+ C++ AL A EEQQRYL + T+AAL WSRAT Y+K Sbjct: 301 ATLRLEPCEMADALAAAEEQQRYLDSIRATVAALDWSRATLYKK 344 >ref|YP_004157290.1| urea amidolyase-like protein [Variovorax paradoxus EPS] gb|ADU39179.1| urea amidolyase related protein [Variovorax paradoxus EPS] Length = 332 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/333 (64%), Positives = 251/333 (75%), Gaps = 10/333 (3%) Query: 1 MIDIIQPGLLTSVQDLGRPGHRRLGINPGGALNPLALSTANLLVGNDVSAAGLEITMGAC 60 MI + +PGLL SVQDLGR GHR+LGI PGGAL+ LAL+ AN LVGN AAGLE+TMG C Sbjct: 1 MIVVQKPGLLASVQDLGRHGHRQLGICPGGALDVLALTLANRLVGNVDGAAGLELTMGGC 60 Query: 61 ELRFTTDTRIALGGDDFDARLDDKFLAPYWSTPVRAGQTLRLAHVGRGGAQG--MRTCLA 118 E+RF TDTRIAL GDDF A+LD L P WS PV AGQ L+L+ GA+ +R+ LA Sbjct: 61 EVRFETDTRIALAGDDFGAQLDGVPLWPCWSVPVAAGQVLKLSGANAAGAKKAGLRSWLA 120 Query: 119 IAGGIDVPIILGSRSTDLKAGFGGHQGRALRKGDRLPLGDAGVKATGPA---FGVRSPQW 175 +AGGIDV +LGSRSTDLKAGFGGH+GRALRKGD+LPLG + + A A FG+R P W Sbjct: 121 VAGGIDVAPVLGSRSTDLKAGFGGHEGRALRKGDKLPLGPSRLNAAQRARKLFGLRGPDW 180 Query: 176 SGLSAQANDSSKLTTLRVLPGPEFEQFTVAARNTLWQDKWRITPNSNRMGYRLEGSELKR 235 ++ LRVLPGPEFE FT+AAR+ LW ++WRIT SNRMG RL G+ELKR Sbjct: 181 G-----PEEADGAIALRVLPGPEFELFTLAARDVLWGERWRITSQSNRMGSRLAGTELKR 235 Query: 236 KQSRDLLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVVIAADMWKLAQAPLNGLL 295 K++ D+LS GV+PG IQVPPSGQPIILMGDAQTTGGYP+IGVVI AD+WKLAQAPLNG L Sbjct: 236 KRAGDMLSSGVIPGTIQVPPSGQPIILMGDAQTTGGYPRIGVVIRADLWKLAQAPLNGKL 295 Query: 296 QLQLCDLEQALHAWEEQQRYLAHVEQTIAALGW 328 +L D+ Q+L AW QQRYLA V Q +A GW Sbjct: 296 RLVQVDMAQSLAAWAGQQRYLAQVAQGLAVAGW 328 >ref|YP_002946243.1| urea amidolyase-like protein [Variovorax paradoxus S110] gb|ACS20977.1| urea amidolyase related protein [Variovorax paradoxus S110] Length = 332 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 217/335 (64%), Positives = 252/335 (75%), Gaps = 10/335 (2%) Query: 1 MIDIIQPGLLTSVQDLGRPGHRRLGINPGGALNPLALSTANLLVGNDVSAAGLEITMGAC 60 M+ + +PG+L SVQDLGR GHR+LGI PGGAL+ LAL+ AN LVGN AAGLE+TMG C Sbjct: 1 MMLVHKPGMLASVQDLGRHGHRQLGICPGGALDVLALTLANRLVGNADGAAGLELTMGGC 60 Query: 61 ELRFTTDTRIALGGDDFDARLDDKFLAPYWSTPVRAGQTLRLAHVGRGGAQG--MRTCLA 118 E+RF T TRIAL GD F ARLD L P WS PV AGQTL+LA GA+ +R+ LA Sbjct: 61 EIRFETATRIALVGDGFGARLDGAPLWPCWSVPVAAGQTLKLAGANAAGAKKAGLRSWLA 120 Query: 119 IAGGIDVPIILGSRSTDLKAGFGGHQGRALRKGDRLPLGDAGVKATGPA---FGVRSPQW 175 +AGGIDVP +LGSRSTDLKAGFGGHQGRALRKGDRLPLG + A A FG+R P W Sbjct: 121 VAGGIDVPPVLGSRSTDLKAGFGGHQGRALRKGDRLPLGATALDAARLARRPFGLRGPDW 180 Query: 176 SGLSAQANDSSKLTTLRVLPGPEFEQFTVAARNTLWQDKWRITPNSNRMGYRLEGSELKR 235 +S LRVLPGPEF+QFTVA++ LW ++WRIT SNRMG RL G+ELKR Sbjct: 181 G-----PEESDSAIALRVLPGPEFDQFTVASQALLWSERWRITAQSNRMGSRLAGAELKR 235 Query: 236 KQSRDLLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVVIAADMWKLAQAPLNGLL 295 ++S D+LS GV+PG IQVPPSGQPIILMGDAQTTGGYP+IGVVI AD+WKLAQAPL+G L Sbjct: 236 RRSADMLSSGVIPGTIQVPPSGQPIILMGDAQTTGGYPRIGVVIRADLWKLAQAPLDGRL 295 Query: 296 QLQLCDLEQALHAWEEQQRYLAHVEQTIAALGWSR 330 +L D+ AL AW QQRYLA V Q +AA GW+R Sbjct: 296 RLVQVDMAAALEAWAGQQRYLAQVAQGLAAAGWTR 330 >ref|YP_001859122.1| urea amidolyase-like protein [Burkholderia phymatum STM815] gb|ACC72076.1| urea amidolyase related protein [Burkholderia phymatum STM815] Length = 350 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 180/338 (53%), Positives = 219/338 (64%), Gaps = 19/338 (5%) Query: 1 MIDIIQPGLLTSVQDLGRPGHRRLGINPGGALNPLALSTANLLVGNDVSAAGLEITMGAC 60 MID+I+ GLLT++QDLGR G+R LG+ GGAL+ L+L N LVGN AAGLEIT G Sbjct: 1 MIDVIRAGLLTTIQDLGRHGYRHLGVAMGGALDRLSLEVGNRLVGNRPDAAGLEITFGPT 60 Query: 61 ELRFTTDTRIALGGDDFDARLDDKFLAPYWSTPVRAGQTLRLAHVGRGGAQGMRTCLAIA 120 LRF TR+A+ G +F A LD K + YWS PV+AGQ L L RG MR + IA Sbjct: 61 VLRFPRATRVAITGTEFGATLDGKPVYSYWSLPVKAGQELTLNAAKRG----MRGYVCIA 116 Query: 121 GGIDVPIILGSRSTDLKAGFGGHQGRALRKGDRLPLG------DAGVKATGPAFGVRSPQ 174 GGIDV +LGSRSTDL AGFGG GRALR GDRLP+G +G P FGV++P Sbjct: 117 GGIDVLPMLGSRSTDLHAGFGGLGGRALRDGDRLPIGAPRPGAGSGFSPDAPEFGVKAPA 176 Query: 175 WSGL---------SAQANDSSKLTTLRVLPGPEFEQFTVAARNTLWQDKWRITPNSNRMG 225 W + + +RVLPGPE++ FT A+ W D+W +TPNSNRMG Sbjct: 177 WCKFVLVDEPVRRGRHPSGVAWAPPVRVLPGPEYDSFTADAQEAFWNDEWLVTPNSNRMG 236 Query: 226 YRLEGSELKRKQSRDLLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVVIAADMWK 285 YRL G+ELKR Q DLLSH V+PG IQVPP+GQPIILM DAQTTGGYPKIG VI AD+WK Sbjct: 237 YRLSGTELKRTQKTDLLSHAVMPGTIQVPPNGQPIILMSDAQTTGGYPKIGAVIHADLWK 296 Query: 286 LAQAPLNGLLQLQLCDLEQALHAWEEQQRYLAHVEQTI 323 LAQ LNG ++ +A A E+++YL ++ I Sbjct: 297 LAQVRLNGAVRFIPTTPYEARQALIEERKYLRQIDAAI 334 >ref|YP_004754826.1| allophanate hydrolase subunit 2 [Collimonas fungivorans Ter331] gb|AEK64003.1| Allophanate hydrolase subunit 2 [Collimonas fungivorans Ter331] Length = 324 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 184/337 (54%), Positives = 218/337 (64%), Gaps = 17/337 (5%) Query: 1 MIDIIQPGLLTSVQDLGRPGHRRLGINPGGALNPLALSTANLLVGNDVSAAGLEITMGAC 60 MI I++ G + SVQD+GR G R LGI GAL+ AL+ ANLLVGN AA +E T+G C Sbjct: 1 MIKILRAGRINSVQDMGRSGFRHLGICQSGALDRTALAIANLLVGNPSDAAAIEFTLGPC 60 Query: 61 ELRFTTDTRIALGGDDFDARLDDKFLAPYWSTPVRAGQTLRLAHVGRGGAQGMRTCLAIA 120 EL FT D RIALGG DF A LDDK L +WS V AGQ LRL GMR LAIA Sbjct: 61 ELAFTADGRIALGGADFAATLDDKPLPSWWSVRVCAGQILRL----NAARHGMRAYLAIA 116 Query: 121 GGIDVPIILGSRSTDLKAGFGGHQGRALRKGDRLPLGDAGVKAT----GPAFGVRSPQWS 176 GGID + LGSR+TDL+AGFGGH G AL +GD LP G A +FGVR P W Sbjct: 117 GGIDAGLQLGSRATDLQAGFGGHGGCALTEGDSLPAGAPDDPAAALHGAASFGVRPPSWY 176 Query: 177 GLSAQANDSSKLTTLRVLPGPEFEQFTVAARNTLWQDKWRITPNSNRMGYRLEGSELKRK 236 D ++ +RV+PGPE+E FT AA+ T W W +TP SNRMG+RL G ELK K Sbjct: 177 ------EDDAETLAIRVIPGPEYELFTQAAQKTFWNSSWTLTPQSNRMGFRLSGPELKIK 230 Query: 237 QSRDLLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVVIAADMWKLAQAPLNGLLQ 296 + DLLSHGV+PGVIQVPP+GQPI+LM DAQTTGGYPKIGVVI+AD+ +LAQ N +Q Sbjct: 231 KGSDLLSHGVLPGVIQVPPAGQPIVLMADAQTTGGYPKIGVVISADLARLAQLRFNRTIQ 290 Query: 297 LQLCDLEQALHAWEEQQRYLAHVEQTIAALGWSRATQ 333 CD+ QA A + YL +E A+ W R Q Sbjct: 291 FVECDVVQARAALRQDASYLQQIE---TAMHWLRPAQ 324