BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0303.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775181.1| LamB/YcsF family protein [Herbaspirillum ser... 425 e-117 ref|YP_004157289.1| lamb/ycsf family protein [Variovorax paradox... 365 5e-99 ref|YP_002946242.1| LamB/YcsF family protein [Variovorax paradox... 358 5e-97 ref|ZP_00943513.1| Lactam utilization protein LAMB [Ralstonia so... 348 6e-94 ref|YP_003751910.1| lactam utilization protein, UPF0271 family ,... 347 8e-94 >ref|YP_003775181.1| LamB/YcsF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63273.1| LamB/YcsF family protein [Herbaspirillum seropedicae SmR1] Length = 246 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/244 (83%), Positives = 224/244 (91%) Query: 1 MHIDLNADLGEGCDNDEQLLTLVSSANIACGWHAGDANTMRQSVRWAIRNHVAIGAHPSF 60 MHIDLNADLGEGCD DEQLLTLVSSANIACGWHAGDANTMR+SVRWAI+NHVAIGAHPSF Sbjct: 1 MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDANTMRRSVRWAIQNHVAIGAHPSF 60 Query: 61 PDRENFGRSAMNLPPEEIISGMLYQLGALDAIVRAEGGCMVHVKPHGALYNQAAKDAVLA 120 PDRENFGRSAM LPPEEI+SGMLYQLGAL+AIVRAEGG M HVKPHGALYNQAAKDAVLA Sbjct: 61 PDRENFGRSAMQLPPEEIVSGMLYQLGALEAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120 Query: 121 HAICSAIRTFNPELALFGLAGSELIGAAKQAGLTAVEEVFADRAYNADGSLVSRTLPGAM 180 +AIC+AIRTFNPEL+L+GLAGSELI AA+ A L AVEEVFADRAY ADGSLV+R+ PGA+ Sbjct: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAL 180 Query: 181 IEDEAQAIAQTISFVKDKQVTAIDGSVVKVNAQTVCLHGDGAHALEFARQIRTRLSNEHI 240 I+++A AIAQT+ VK K+V AIDGS+V+VNAQTVCLHGDGAHAL+FARQIR RL E I Sbjct: 181 IDNDADAIAQTLMLVKQKKVKAIDGSIVEVNAQTVCLHGDGAHALDFARQIRARLHEERI 240 Query: 241 GVRA 244 VRA Sbjct: 241 AVRA 244 >ref|YP_004157289.1| lamb/ycsf family protein [Variovorax paradoxus EPS] gb|ADU39178.1| LamB/YcsF family protein [Variovorax paradoxus EPS] Length = 246 Score = 365 bits (936), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 178/244 (72%), Positives = 201/244 (82%) Query: 1 MHIDLNADLGEGCDNDEQLLTLVSSANIACGWHAGDANTMRQSVRWAIRNHVAIGAHPSF 60 MHIDLNADLGEG +DE LL LVSSANIACGWHAGDA TMRQ VRWAI + VAIGAHPSF Sbjct: 1 MHIDLNADLGEGAGSDEALLGLVSSANIACGWHAGDAKTMRQCVRWAIEHGVAIGAHPSF 60 Query: 61 PDRENFGRSAMNLPPEEIISGMLYQLGALDAIVRAEGGCMVHVKPHGALYNQAAKDAVLA 120 PDRENFGRS M+LPP+EI+S +LYQ+GAL AIV+AEGG + HVK HG LYNQA K+ LA Sbjct: 61 PDRENFGRSTMHLPPDEIVSNVLYQVGALAAIVKAEGGQLAHVKAHGQLYNQAVKEPELA 120 Query: 121 HAICSAIRTFNPELALFGLAGSELIGAAKQAGLTAVEEVFADRAYNADGSLVSRTLPGAM 180 A+C A+R F+P L FGLAGS +I AA++AGLT VEEVFADR Y DGSLV R+ PGA+ Sbjct: 121 DALCEAVRRFDPTLKFFGLAGSNMIDAARRAGLTPVEEVFADRGYMPDGSLVPRSQPGAL 180 Query: 181 IEDEAQAIAQTISFVKDKQVTAIDGSVVKVNAQTVCLHGDGAHALEFARQIRTRLSNEHI 240 IE E Q+IAQT++FV+D QVTAIDGS V VNAQTVCLHGDGAHAL FAR+IR RL E I Sbjct: 181 IESEEQSIAQTLAFVRDHQVTAIDGSTVAVNAQTVCLHGDGAHALAFARRIRERLQAEGI 240 Query: 241 GVRA 244 VRA Sbjct: 241 AVRA 244 >ref|YP_002946242.1| LamB/YcsF family protein [Variovorax paradoxus S110] gb|ACS20976.1| LamB/YcsF family protein [Variovorax paradoxus S110] Length = 246 Score = 358 bits (918), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 173/244 (70%), Positives = 200/244 (81%) Query: 1 MHIDLNADLGEGCDNDEQLLTLVSSANIACGWHAGDANTMRQSVRWAIRNHVAIGAHPSF 60 M IDLNADLGEG +DE LL LVSSANIACGWHAGDA TMRQ VRWAI + VAIGAHPSF Sbjct: 1 MQIDLNADLGEGAGSDEALLGLVSSANIACGWHAGDAKTMRQCVRWAIAHGVAIGAHPSF 60 Query: 61 PDRENFGRSAMNLPPEEIISGMLYQLGALDAIVRAEGGCMVHVKPHGALYNQAAKDAVLA 120 PDRENFGRS M+LPP+EI++ +LYQ+GAL AI +AEGG + HVK HG LYNQA K+ LA Sbjct: 61 PDRENFGRSTMHLPPDEIVANVLYQVGALAAIAKAEGGQLSHVKAHGQLYNQAVKEPELA 120 Query: 121 HAICSAIRTFNPELALFGLAGSELIGAAKQAGLTAVEEVFADRAYNADGSLVSRTLPGAM 180 A+C A+R F+P L FGLAGS +I AA++AGLT VEEVFADR Y DGSLV R+ PGA+ Sbjct: 121 DALCEAVRRFDPSLRFFGLAGSGMIDAARRAGLTPVEEVFADRGYMPDGSLVPRSQPGAL 180 Query: 181 IEDEAQAIAQTISFVKDKQVTAIDGSVVKVNAQTVCLHGDGAHALEFARQIRTRLSNEHI 240 IEDE Q++AQT+S V+D++V AIDGS+V VNAQTVCLHGDGAHAL FAR+IR RL E I Sbjct: 181 IEDEEQSLAQTLSLVRDRKVKAIDGSIVPVNAQTVCLHGDGAHALAFARRIRERLQQEGI 240 Query: 241 GVRA 244 VRA Sbjct: 241 AVRA 244 >ref|ZP_00943513.1| Lactam utilization protein LAMB [Ralstonia solanacearum UW551] ref|YP_002260164.1| hypothetical protein RSIPO_01955 [Ralstonia solanacearum IPO1609] ref|YP_003745146.1| lactam utilization protein, upf0271 family , lamb/ycsf family [Ralstonia solanacearum CFBP2957] gb|EAP73920.1| Lactam utilization protein LAMB [Ralstonia solanacearum UW551] emb|CAQ35965.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] emb|CAQ62099.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] emb|CBJ42523.1| putative lactam utilization protein, UPF0271 family , LamB/YcsF family [Ralstonia solanacearum CFBP2957] gb|AEG68569.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 247 Score = 348 bits (892), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 164/242 (67%), Positives = 200/242 (82%) Query: 3 IDLNADLGEGCDNDEQLLTLVSSANIACGWHAGDANTMRQSVRWAIRNHVAIGAHPSFPD 62 IDLNADLGEGCDNDE LL LVSSANIACGWHAGD NTMRQ+ WA+R V+IGAHPSFPD Sbjct: 4 IDLNADLGEGCDNDEALLALVSSANIACGWHAGDVNTMRQTTAWALRQGVSIGAHPSFPD 63 Query: 63 RENFGRSAMNLPPEEIISGMLYQLGALDAIVRAEGGCMVHVKPHGALYNQAAKDAVLAHA 122 RE+FGR+ M+LPP+EI +G+L+Q+G L AIVRA+GG + HVKPHGALYNQAA+D LA A Sbjct: 64 REHFGRTEMHLPPDEIHAGVLFQIGGLSAIVRAQGGRLAHVKPHGALYNQAARDRPLAMA 123 Query: 123 ICSAIRTFNPELALFGLAGSELIGAAKQAGLTAVEEVFADRAYNADGSLVSRTLPGAMIE 182 I A+R F+P L +FGLAG EL+ AA++ GL A EEVFADR YNADG+LV R PGA++E Sbjct: 124 IARAVRDFDPSLVVFGLAGGELVRAARELGLAAKEEVFADRGYNADGTLVKRGTPGALLE 183 Query: 183 DEAQAIAQTISFVKDKQVTAIDGSVVKVNAQTVCLHGDGAHALEFARQIRTRLSNEHIGV 242 DE A+AQT++ V++++V ++DG V ++AQTVCLHGDGAHAL FAR+IR RL +E I V Sbjct: 184 DEEAALAQTLAMVREQRVQSVDGVWVPIHAQTVCLHGDGAHALAFARRIRDRLGSEGIAV 243 Query: 243 RA 244 RA Sbjct: 244 RA 245 >ref|YP_003751910.1| lactam utilization protein, UPF0271 family , LamB/YcsF family [Ralstonia solanacearum PSI07] emb|CBJ50616.1| putative lactam utilization protein, UPF0271 family , LamB/YcsF family [Ralstonia solanacearum PSI07] emb|CCA79449.1| putative lactam utilization protein, UPF0271 family , LamB/YcsF family [blood disease bacterium R229] emb|CCA84524.1| putative lactam utilization protein, UPF0271 family , LamB/YcsF family [Ralstonia syzygii R24] Length = 247 Score = 347 bits (890), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 163/242 (67%), Positives = 200/242 (82%) Query: 3 IDLNADLGEGCDNDEQLLTLVSSANIACGWHAGDANTMRQSVRWAIRNHVAIGAHPSFPD 62 IDLNADLGEGCDNDE LL LVSSANIACGWHAGD NTMRQ+ WA+R V+IGAHPSFPD Sbjct: 4 IDLNADLGEGCDNDEALLALVSSANIACGWHAGDVNTMRQTTAWALRQGVSIGAHPSFPD 63 Query: 63 RENFGRSAMNLPPEEIISGMLYQLGALDAIVRAEGGCMVHVKPHGALYNQAAKDAVLAHA 122 RENFGR+ M+LPP+E+ +G+L+Q+G L AIVRA+GG + HVKPHGALYNQAA+D LA A Sbjct: 64 RENFGRTEMHLPPDEVYAGVLFQIGGLAAIVRAQGGRLAHVKPHGALYNQAARDRPLAMA 123 Query: 123 ICSAIRTFNPELALFGLAGSELIGAAKQAGLTAVEEVFADRAYNADGSLVSRTLPGAMIE 182 I A R F+P LA+FGLAG EL+ AA++ GL A EEVFADR YNADG+LV R PGA++E Sbjct: 124 IARAARDFDPSLAVFGLAGGELVLAARELGLVAKEEVFADRGYNADGTLVKRGTPGALLE 183 Query: 183 DEAQAIAQTISFVKDKQVTAIDGSVVKVNAQTVCLHGDGAHALEFARQIRTRLSNEHIGV 242 DE A++QT++ V++++V ++DG V ++AQTVCLHGDGAHAL FA++IR RL +E I V Sbjct: 184 DEEAALSQTLAMVREQRVKSVDGVWVPIHAQTVCLHGDGAHALAFAQRIRDRLGSEGIAV 243 Query: 243 RA 244 RA Sbjct: 244 RA 245