BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0294.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751931.1| endoribonuclease L-PSP [Collimonas fungivora...   187   5e-46
ref|YP_002007779.1| hypothetical protein RALTA_B1119 [Cupriavidu...   181   3e-44
ref|YP_840728.1| endoribonuclease [Ralstonia eutropha H16] >gi|1...   180   5e-44
ref|YP_003775172.1| translation initiation inhibitor protein [He...   179   2e-43
ref|YP_586904.1| endoribonuclease L-PSP [Cupriavidus metallidura...   173   6e-42

>ref|YP_004751931.1| endoribonuclease L-PSP [Collimonas fungivorans Ter331]
 gb|AEK61108.1| Endoribonuclease L-PSP [Collimonas fungivorans Ter331]
          Length = 127

 Score =  187 bits (474), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 104/112 (92%), Gaps = 5/112 (4%)

Query: 1   MSIKRYGVDGGKGTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSHQAIKNV 60
           M+IKRYGV+GG GTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSH+ I+NV
Sbjct: 1   MTIKRYGVEGGSGTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSHKTIQNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDTRDFQSFNKVFKEYFGANPLTRKXPAPAC 112
           LAILKEAGYGPEHVVRCGVWLDDTRDFQSFN+VFKEYFGANP     PA AC
Sbjct: 61  LAILKEAGYGPEHVVRCGVWLDDTRDFQSFNRVFKEYFGANP-----PARAC 107


>ref|YP_002007779.1| hypothetical protein RALTA_B1119 [Cupriavidus taiwanensis LMG
           19424]
 ref|YP_004681375.1| endoribonuclease [Cupriavidus necator N-1]
 emb|CAQ71722.1| conserved hypothetical protein, endoribonuclease L-PSP domain
           [Cupriavidus taiwanensis LMG 19424]
 gb|AEI80143.1| endoribonuclease [Cupriavidus necator N-1]
          Length = 130

 Score =  181 bits (459), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 106/134 (79%), Gaps = 8/134 (5%)

Query: 1   MSIKRYGVDGGKGTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSHQAIKNV 60
           M IKR+GV+GG GTGGQH+PFARAV ADGWLYVSGQV MV+GEVIDGGIV Q+HQAIKNV
Sbjct: 1   MDIKRFGVEGGTGTGGQHMPFARAVAADGWLYVSGQVPMVNGEVIDGGIVPQTHQAIKNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDTRDFQSFNKVFKEYFGANPLTRKXPAPAC---SRQWS 117
           LAIL EAGYGPEHVVRCGVWLDDTRDF SFNK+FKEYFGANP     PA AC   S    
Sbjct: 61  LAILAEAGYGPEHVVRCGVWLDDTRDFASFNKIFKEYFGANP-----PARACVQSSMVVD 115

Query: 118 STARLKWIAWRSSA 131
               +  IA++  A
Sbjct: 116 CKVEVDCIAYKKPA 129


>ref|YP_840728.1| endoribonuclease [Ralstonia eutropha H16]
 emb|CAJ95998.1| Endoribonuclease [Ralstonia eutropha H16]
          Length = 130

 Score =  180 bits (457), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 105/134 (78%), Gaps = 8/134 (5%)

Query: 1   MSIKRYGVDGGKGTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSHQAIKNV 60
           M IKR+GV+GG GTGGQH+PFARAV ADGWLYVSGQV MV GEVIDGGIV Q+HQAIKNV
Sbjct: 1   MDIKRFGVEGGTGTGGQHMPFARAVAADGWLYVSGQVPMVSGEVIDGGIVPQTHQAIKNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDTRDFQSFNKVFKEYFGANPLTRKXPAPAC---SRQWS 117
           LAIL EAGYGPEHVVRCGVWLDDTRDF SFNK+FKEYFGANP     PA AC   S    
Sbjct: 61  LAILAEAGYGPEHVVRCGVWLDDTRDFASFNKIFKEYFGANP-----PARACVQSSMVVD 115

Query: 118 STARLKWIAWRSSA 131
               +  IA++  A
Sbjct: 116 CKVEVDCIAYKKPA 129


>ref|YP_003775172.1| translation initiation inhibitor protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63264.1| translation initiation inhibitor (yjgF family) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 127

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/112 (85%), Positives = 102/112 (91%), Gaps = 5/112 (4%)

Query: 1   MSIKRYGVDGGKGTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSHQAIKNV 60
           MSI+R+GV+GG GTGGQHLPFARAV ADGWLYVSGQVAM +GEVIDGGIVAQSH+AI+NV
Sbjct: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVAMENGEVIDGGIVAQSHKAIQNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDTRDFQSFNKVFKEYFGANPLTRKXPAPAC 112
           LAILKEAGYGPEHVVRCGVWLDD RDFQSFNKVFKEYFGANP     PA AC
Sbjct: 61  LAILKEAGYGPEHVVRCGVWLDDARDFQSFNKVFKEYFGANP-----PARAC 107


>ref|YP_586904.1| endoribonuclease L-PSP [Cupriavidus metallidurans CH34]
 gb|ABF11635.1| putative endoribonuclease L-PSP [Cupriavidus metallidurans CH34]
          Length = 130

 Score =  173 bits (439), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 105/134 (78%), Gaps = 8/134 (5%)

Query: 1   MSIKRYGVDGGKGTGGQHLPFARAVEADGWLYVSGQVAMVDGEVIDGGIVAQSHQAIKNV 60
           M IKR+GV+GG G GG H+PFARAV+ADGWLYVSGQV MV+GEVIDGGIVAQSHQAI+NV
Sbjct: 1   MDIKRFGVEGGTGQGGSHMPFARAVQADGWLYVSGQVPMVNGEVIDGGIVAQSHQAIQNV 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDTRDFQSFNKVFKEYFGANPLTRKXPAPAC---SRQWS 117
           +AIL EAGYGPEHVVRCGVWLDD RDF SFNK+FKEYFGANP     PA AC   S    
Sbjct: 61  MAILAEAGYGPEHVVRCGVWLDDARDFTSFNKIFKEYFGANP-----PARACVQSSMVVD 115

Query: 118 STARLKWIAWRSSA 131
               +  IA++  A
Sbjct: 116 CKVEVDCIAYKKPA 129