BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0291.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775170.1| transcription regulator protein [Herbaspiril... 491 e-137 ref|YP_004751929.1| RpiR family transcriptional regulator [Colli... 442 e-122 ref|YP_586902.1| RpiR family transcriptional regulator [Cupriavi... 372 e-101 ref|YP_298221.1| RpiR family transcriptional regulator [Ralstoni... 372 e-101 ref|YP_004681377.1| GlvR family transcriptional regulator [Cupri... 371 e-101 >ref|YP_003775170.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63262.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 243/294 (82%), Positives = 264/294 (89%), Gaps = 1/294 (0%) Query: 27 MAQAFDIVSRITERSGQLRLAEQKVAEAILSDLSFAASASIGELALKAGVSLASVTRFAK 86 MAQ DI+SRITERS LRLAEQKVAEAIL DL AASASIGELA KAGVS+ASVTRFAK Sbjct: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLHAAASASIGELADKAGVSVASVTRFAK 60 Query: 87 AMGCRDVREFKFMLAQAVAVGQRFFDGVKTIPSGQPPELIDVVYNDIHAVLEVNRALINS 146 AMGCRDVREFKF+LAQAVAVGQRFFDG KT+PS QPPEL DVVY DIHAVLE+NRA++N+ Sbjct: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNA 120 Query: 147 DALARAAELLRDARMIYSFGMGGGSTMMSDEARYRLVRLGRPVATYHDALLQRMVAATLD 206 D L +AA LL ARMIY FGMGGGSTMMSDEARYRLVRLGRPVA+YHDA+LQ+MVAATLD Sbjct: 121 DMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAATLD 180 Query: 207 KNDMLLVFSTTGNVPELLTNCEVAKEYGVKMIGITALGSPLAGMVDVLLPIKTLETDFIF 266 K+D+LLVFSTTG+VPELL +CEVA+EYGVK+I ITALGSPLA + DVLLPIKTLETD IF Sbjct: 181 KDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKLADVLLPIKTLETDLIF 240 Query: 267 KPSSSRYAMMMVLDMLVLELALLQKDRSQEQLRRLKYVLDMHRGGGD-RQPLGD 319 KPSSSRYAMM LDMLVLELALL K+ SQE+LRRLKYVLD HRGGGD QPLGD Sbjct: 241 KPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 >ref|YP_004751929.1| RpiR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61106.1| transcriptional regulator, RpiR family [Collimonas fungivorans Ter331] Length = 293 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/293 (73%), Positives = 247/293 (84%) Query: 27 MAQAFDIVSRITERSGQLRLAEQKVAEAILSDLSFAASASIGELALKAGVSLASVTRFAK 86 M Q FDIVSRI ERS QLRLAEQKVA+AILSDL FAASASI LA +AGVS ASVTRFAK Sbjct: 1 MTQLFDIVSRIAERSSQLRLAEQKVAQAILSDLPFAASASIQTLARQAGVSEASVTRFAK 60 Query: 87 AMGCRDVREFKFMLAQAVAVGQRFFDGVKTIPSGQPPELIDVVYNDIHAVLEVNRALINS 146 A+GCRDVRE K LAQA A+GQRF ++ Q P+++D+VY DIH LEVNR+L++ Sbjct: 61 AIGCRDVRELKMRLAQAAAIGQRFLRTENSVAENQFPQIVDIVYADIHKSLEVNRSLLSQ 120 Query: 147 DALARAAELLRDARMIYSFGMGGGSTMMSDEARYRLVRLGRPVATYHDALLQRMVAATLD 206 D L +AA L ARMIY+FGMGGGSTM+SDEARYRLVRLGRPVATYHDA+LQ+MVAATLD Sbjct: 121 DNLLQAARALLQARMIYAFGMGGGSTMLSDEARYRLVRLGRPVATYHDAMLQKMVAATLD 180 Query: 207 KNDMLLVFSTTGNVPELLTNCEVAKEYGVKMIGITALGSPLAGMVDVLLPIKTLETDFIF 266 K+D++L STTGNVPEL +C +AKEYGV+++ ITALGSPLA M DVLLP+K+LETDFIF Sbjct: 181 KDDVILALSTTGNVPELNASCAIAKEYGVRLVAITALGSPLAAMADVLLPLKSLETDFIF 240 Query: 267 KPSSSRYAMMMVLDMLVLELALLQKDRSQEQLRRLKYVLDMHRGGGDRQPLGD 319 KPSSSRYAMMM LD+L+ ELALLQKD SQE LRRLK+ LD HRGGG+R+PLGD Sbjct: 241 KPSSSRYAMMMALDVLMTELALLQKDHSQELLRRLKFTLDTHRGGGNREPLGD 293 >ref|YP_586902.1| RpiR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11633.1| putative transcriptional regulator of the RpiR family [Cupriavidus metallidurans CH34] Length = 301 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 188/301 (62%), Positives = 233/301 (77%), Gaps = 8/301 (2%) Query: 27 MAQAFDIVSRITERSGQLRLAEQKVAEAILSDLSFAASASIGELALKAGVSLASVTRFAK 86 M FDI++RI ER LRLAEQKVA+ IL DL+ AA+ASI ELA KA VS ASVTRFAK Sbjct: 1 MTAPFDILTRIAERGPSLRLAEQKVAQVILEDLAGAAAASINELARKAAVSEASVTRFAK 60 Query: 87 AMGCRDVREFKFMLAQAVAVGQRFFDGVK-TIPSGQPPELIDVVYNDIHAVLEVNRALIN 145 A+GCRDVR+ K LAQA AVG RF + + P L + ++ D+ A LEVNR LI+ Sbjct: 61 AIGCRDVRDLKLRLAQATAVGSRFLQPAPGPVDTDAPAALAERIHADVLATLEVNRKLID 120 Query: 146 SDALARAAELLRDARMIYSFGMGGGSTMMSDEARYRLVRLGRPVATYHDALLQRMVAATL 205 + + AA LL +ARM+Y+FGMGGGST M+DEARYRL RLG PVATYHDALLQ+MVAATL Sbjct: 121 PERIDIAARLLLNARMVYAFGMGGGSTFMADEARYRLARLGHPVATYHDALLQKMVAATL 180 Query: 206 DKNDMLLVFSTTGNVPELLTNCEVAKEYGVKMIGITALGSPLAGMVDVLLPIKTLETDFI 265 ++D++L FS +G+VPE+L +C++A+EYG ++I +TALGSPLA DVLLP++TLETDFI Sbjct: 181 TRDDVVLAFSASGSVPEILASCDIAREYGARLIAVTALGSPLAARADVLLPVRTLETDFI 240 Query: 266 FKPSSSRYAMMMVLDMLVLELALLQKDRSQEQLRRLKYVLDMHRG------GGD-RQPLG 318 FKPS+SRYAM+MVLD+L ALLQ+++S+E+LRRLKYVLD HRG G D RQPLG Sbjct: 241 FKPSASRYAMLMVLDVLSTRFALLQQEQSKEKLRRLKYVLDAHRGVSQDSDGPDSRQPLG 300 Query: 319 D 319 D Sbjct: 301 D 301 >ref|YP_298221.1| RpiR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ63377.1| transcriptional regulator, RpiR family [Ralstonia eutropha JMP134] Length = 306 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/307 (60%), Positives = 238/307 (77%), Gaps = 15/307 (4%) Query: 27 MAQAFDIVSRITERSGQLRLAEQKVAEAILSDLSFAASASIGELALKAGVSLASVTRFAK 86 M FDI++RI ER LRLAEQKVA+ +L DL+ AA+ASI ELA KAGVS ASVTRFAK Sbjct: 1 MTAPFDILTRIAERGPALRLAEQKVAQVVLEDLAGAAAASINELARKAGVSEASVTRFAK 60 Query: 87 AMGCRDVREFKFMLAQAVAVGQRFFD--GVKTIPSGQPPELIDVVYNDIHAVLEVNRALI 144 A+GCRDVR+ K LAQA AVG RF D GV P+ P + D ++ D+ LEVNR LI Sbjct: 61 AIGCRDVRDLKLRLAQATAVGMRFLDPDGVPA-PADAPATVADRIHADVLTALEVNRKLI 119 Query: 145 NSDALARAAELLRDARMIYSFGMGGGSTMMSDEARYRLVRLGRPVATYHDALLQRMVAAT 204 ++D + +AA LL ARM+Y+FGMGGGS++M+DEAR+RL RLG+PVA+Y D LLQ+MVAAT Sbjct: 120 DTDRMEQAARLLLGARMVYAFGMGGGSSIMADEARHRLARLGQPVASYQDGLLQKMVAAT 179 Query: 205 LDKNDMLLVFSTTGNVPELLTNCEVAKEYGVKMIGITALGSPLAGMVDVLLPIKTLETDF 264 L ++D++L FS +G+VPE+L +C++A+EYG K++ +TALGSPLA DVLLP++TLETDF Sbjct: 180 LSRDDVVLAFSASGSVPEMLASCDIAREYGAKLVAVTALGSPLAARADVLLPVRTLETDF 239 Query: 265 IFKPSSSRYAMMMVLDMLVLELALLQKDRSQEQLRRLKYVLDMHRG-----GGD------ 313 IFKPS+SRYAM++VLD+L + ALLQ+D+S+E+LRRLKYVLD HRG G D Sbjct: 240 IFKPSASRYAMLLVLDVLATQCALLQQDQSKERLRRLKYVLDAHRGPAGERGPDSGAGPD 299 Query: 314 -RQPLGD 319 RQPLGD Sbjct: 300 GRQPLGD 306 >ref|YP_004681377.1| GlvR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80145.1| transcriptional regulator GlvR family [Cupriavidus necator N-1] Length = 301 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/302 (61%), Positives = 236/302 (78%), Gaps = 10/302 (3%) Query: 27 MAQAFDIVSRITERSGQLRLAEQKVAEAILSDLSFAASASIGELALKAGVSLASVTRFAK 86 M FDI++RI ER LRLAEQKVA+ +L DL+ AA+ASI ELA KAGVS ASVTRFAK Sbjct: 1 MTAPFDILTRIAERGPALRLAEQKVAQVVLEDLAGAAAASINELARKAGVSEASVTRFAK 60 Query: 87 AMGCRDVREFKFMLAQAVAVGQRFFDGVKTIPSGQ--PPELIDVVYNDIHAVLEVNRALI 144 A+GCRDVR+ K LAQA AVG RF ++P+G+ P L D ++ DI LEVNR L+ Sbjct: 61 AIGCRDVRDLKLRLAQATAVGARFLQ-PGSVPAGEAAPATLADSIHADILTALEVNRGLM 119 Query: 145 NSDALARAAELLRDARMIYSFGMGGGSTMMSDEARYRLVRLGRPVATYHDALLQRMVAAT 204 ++ + +AA LL ARM+Y+FGMGGGS+ M+DEAR+RL RLG+PVA+Y DALLQ+MVAAT Sbjct: 120 DAQRIEQAARLLLGARMVYAFGMGGGSSFMADEARHRLARLGQPVASYQDALLQKMVAAT 179 Query: 205 LDKNDMLLVFSTTGNVPELLTNCEVAKEYGVKMIGITALGSPLAGMVDVLLPIKTLETDF 264 L ++D++L FS +G VPE+L +C++A+EYG +++ +TALGSPLA DVLLP++TLETDF Sbjct: 180 LGRDDVVLAFSASGRVPEMLASCDIAREYGARLVAVTALGSPLAARADVLLPVRTLETDF 239 Query: 265 IFKPSSSRYAMMMVLDMLVLELALLQKDRSQEQLRRLKYVLDMHRG------GGD-RQPL 317 IFKPS+SRYAM+MVLD+L + ALLQ D+S+E+LRRLKYVLD HRG G D RQPL Sbjct: 240 IFKPSASRYAMLMVLDVLATQCALLQPDQSKERLRRLKYVLDTHRGESGPARGPDSRQPL 299 Query: 318 GD 319 GD Sbjct: 300 GD 301