BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0283.p (500 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775166.1| transcription regulator protein [Herbaspiril... 760 0.0 emb|CAQ56918.1| hypothetical protein RSMK04320 [Ralstonia solana... 619 e-175 ref|ZP_00943102.1| Transcriptional regulator, GntR family / AMIN... 619 e-175 ref|YP_003753377.1| GntR family transcriptional regulator [Ralst... 619 e-175 ref|YP_003746640.1| fused transcriptional regulator aminotransfe... 617 e-174 >ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63258.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/485 (74%), Positives = 417/485 (85%), Gaps = 2/485 (0%) Query: 16 ALTPVAPPA--LPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRH 73 +L P AP + P+YRRLA+HY SAIQ+GTL GDRMPSVRDLMRQH VSLSTALQTLRH Sbjct: 29 SLLPSAPESGRQPLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRH 88 Query: 74 LEEGGWLEARPRSGYFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQA 133 +EEGGWLEARPRSGYFVRQPRR+ IRPV EP L +D Q+VGIHE+VS +IA RQ A Sbjct: 89 MEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSLLAIDAGQFVGIHERVSKYIALRQAGA 148 Query: 134 PTIDLSGMTCAPELYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGI 193 P IDLSGMTCAP+LYAVE LK AA+RALRE+P LLTSAMP NGNATFRQ VARRALNAG+ Sbjct: 149 PHIDLSGMTCAPQLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALNAGM 208 Query: 194 RIGADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQ 253 RI ++VVVTHGCIEALNLA+RAVA GDTIAVESPTYFGLLQ LE+LGM+ALEIPTSP Sbjct: 209 RIDTEEVVVTHGCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPH 268 Query: 254 TGISIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAY 313 TGIS+EALELA++TYGNIKAVVVVP LQNPLGCIMP+ HK++LV LC++ +PLIEDDAY Sbjct: 269 TGISVEALELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAY 328 Query: 314 SELADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRA 373 +ELADG V PS+ K DR+GNVIYCASLNKVLAPGMRLGWM G+WHERVKMLKF +TRA Sbjct: 329 TELADGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRA 388 Query: 374 NEEWTQITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLW 433 NEEWTQ+TAA+++ SPAYDRHLRRLR LK+QRE+MAE+IA YFP TRL++PNGGVGLW Sbjct: 389 NEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLW 448 Query: 434 VELPRGLSSKAVFAAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLGG 493 VELP + S+ +F AL +G+GVSPG IFSNS R+ H++R+CCG PF ELDQALR+LGG Sbjct: 449 VELPVQVCSQQLFERALAEGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRLGG 508 Query: 494 IVERM 498 +V + Sbjct: 509 LVHHL 513 >emb|CAQ56918.1| hypothetical protein RSMK04320 [Ralstonia solanacearum MolK2] Length = 493 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 302/466 (64%), Positives = 356/466 (76%), Gaps = 1/466 (0%) Query: 27 IYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPRS 86 +YR LA+HYL A++SG L PG RMPSVR LMR H VSLSTALQ RHLE GWLEAR RS Sbjct: 20 LYRTLADHYLGAMRSGALTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEAEGWLEARERS 79 Query: 87 GYFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQAPTIDLSGMTCAPE 146 GYFVRQPRRA + PV EP + P DPA YVG+H +VS +AR Q +DLSG + A Sbjct: 80 GYFVRQPRRALLAPVKEPEVATP-DPAAYVGVHARVSAIVARGQQARARVDLSGASGAAT 138 Query: 147 LYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGADDVVVTHGC 206 LY AL A + LR +P LLT A+ NG+ + VARRAL G+++ DDVVVTHGC Sbjct: 139 LYPSAALNRIATQMLRTRPLLLTQAVTPNGHPDLQTAVARRALEMGVQVAPDDVVVTHGC 198 Query: 207 IEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISIEALELAIQ 266 IEA+NLALRAVAQ GDT+AVESPTY+GLLQ LE LGMRA+EIPTSP+TGIS+EALE+A+Q Sbjct: 199 IEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLGMRAVEIPTSPRTGISLEALEMAVQ 258 Query: 267 TYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELADGDVAPSAA 326 YGNI+AVVVVP LQNPLG IMPDA K RL A CE +PLIEDD YS LADG A Sbjct: 259 AYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHGIPLIEDDTYSALADGPAPLKAI 318 Query: 327 KVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWTQITAANYM 386 K WDRSGNVIYCASLNK +APG+RLGWMT G+W ERV+MLKFA +R N+ W+Q+TAA + Sbjct: 319 KAWDRSGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAARLL 378 Query: 387 GSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVELPRGLSSKAVF 446 S AYDRH+R LR +L+EQRE+MAE IAG FP TRLSVP GGV +WVELP G+SS A+F Sbjct: 379 SSGAYDRHIRTLRQTLREQRERMAETIAGCFPAGTRLSVPAGGVAMWVELPAGVSSMALF 438 Query: 447 AAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLG 492 AAL GI ++PG +FSN +RFDHY R+C G P+T E++ AL +LG Sbjct: 439 EAALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTAEVETALAQLG 484 >ref|ZP_00943102.1| Transcriptional regulator, GntR family / AMINOTRANSFERASE CLASS-I [Ralstonia solanacearum UW551] ref|YP_002258850.1| hypothetical protein RSIPO_00646 [Ralstonia solanacearum IPO1609] gb|EAP74353.1| Transcriptional regulator, GntR family / AMINOTRANSFERASE CLASS-I [Ralstonia solanacearum UW551] emb|CAQ60775.1| hypothetical protein RSIPO_00646 [Ralstonia solanacearum IPO1609] Length = 493 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 302/466 (64%), Positives = 356/466 (76%), Gaps = 1/466 (0%) Query: 27 IYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPRS 86 +YR LA+HYL A++SG L PG RMPSVR LMR H VSLSTALQ RHLE GWLEAR RS Sbjct: 20 LYRTLADHYLGAMRSGALTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEAEGWLEARERS 79 Query: 87 GYFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQAPTIDLSGMTCAPE 146 GYFVRQPRRA + PV EP + P DPA YVG+H +VS +AR Q +DLSG + A Sbjct: 80 GYFVRQPRRALLAPVKEPEVATP-DPAAYVGVHARVSAIVARGQQARARVDLSGASGAAT 138 Query: 147 LYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGADDVVVTHGC 206 LY AL A + LR +P LLT A+ NG+ + VARRAL G+++ DDVVVTHGC Sbjct: 139 LYPSAALNRIATQMLRTRPLLLTQAVTPNGHPDLQTAVARRALEMGVQVAPDDVVVTHGC 198 Query: 207 IEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISIEALELAIQ 266 IEA+NLALRAVAQ GDT+AVESPTY+GLLQ LE LGMRA+EIPTSP+TGIS+EALE+A+Q Sbjct: 199 IEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLGMRAVEIPTSPRTGISLEALEMAVQ 258 Query: 267 TYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELADGDVAPSAA 326 YGNI+AVVVVP LQNPLG IMPDA K RL A CE +PLIEDD YS LADG A Sbjct: 259 AYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHGIPLIEDDTYSALADGPAPLKAI 318 Query: 327 KVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWTQITAANYM 386 K WDRSGNVIYCASLNK +APG+RLGWMT G+W ERV+MLKFA +R N+ W+Q+TAA + Sbjct: 319 KAWDRSGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAARLL 378 Query: 387 GSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVELPRGLSSKAVF 446 S AYDRH+R LR +L+EQRE+MAE IAG FP TRLSVP GGV +WVELP G+SS A+F Sbjct: 379 SSGAYDRHIRTLRQTLREQRERMAETIAGCFPAGTRLSVPAGGVAMWVELPAGVSSMALF 438 Query: 447 AAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLG 492 AAL GI ++PG +FSN +RFDHY R+C G P+T E++ AL +LG Sbjct: 439 EAALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTAEVETALAQLG 484 >ref|YP_003753377.1| GntR family transcriptional regulator [Ralstonia solanacearum PSI07] emb|CBJ52117.1| putative fused transcriptional regulator aminotransferase, GntR MocR domains 2-aminoadipate transaminase [Ralstonia solanacearum PSI07] Length = 504 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 311/502 (61%), Positives = 370/502 (73%), Gaps = 7/502 (1%) Query: 3 MQPPPFAAAAATSA--LTPVAPP----ALPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDL 56 M ++A AA S LTPV+ A P+YR LA+HYL A++SG L PG RMPSVR L Sbjct: 1 MDDSAYSAPAAMSVIELTPVSAARPRAAQPLYRTLADHYLGAMRSGVLTPGQRMPSVRTL 60 Query: 57 MRQHHVSLSTALQTLRHLEEGGWLEARPRSGYFVRQPRRATIRPVGEPNILAPLDPAQYV 116 MR H VSLSTALQ RHLE GWLEAR RSGYFVRQPRRA + PV EP + P DPA YV Sbjct: 61 MRTHSVSLSTALQVCRHLEAEGWLEARERSGYFVRQPRRALLAPVKEPEVATP-DPAAYV 119 Query: 117 GIHEQVSDFIARRQLQAPTIDLSGMTCAPELYAVEALKNAAIRALREQPSLLTSAMPING 176 G+H +VS IAR Q +DLSG + A LY L A + LR +P LLT A+ NG Sbjct: 120 GVHARVSAIIARGQQARVRVDLSGASGAATLYPSAVLNRIATQMLRTRPLLLTQAVTPNG 179 Query: 177 NATFRQVVARRALNAGIRIGADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQ 236 + + VARRAL G+++ DDVVVTHGCIEA+NLALRAVAQ GDT+AVESPTY+GLLQ Sbjct: 180 HPDLQTAVARRALEMGVQVAPDDVVVTHGCIEAVNLALRAVAQPGDTVAVESPTYYGLLQ 239 Query: 237 TLESLGMRALEIPTSPQTGISIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERL 296 LE LGMRA+EIPTSP+TGIS+EALE+A+Q YGNI+AVVVVP LQNPLG IMPDA K RL Sbjct: 240 VLECLGMRAVEIPTSPRTGISLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPDAAKRRL 299 Query: 297 VALCERCAVPLIEDDAYSELADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTS 356 A CE + LIEDD YS LADG A K WDRSGNVIYCASLNK +APG+RLGWMT Sbjct: 300 AAFCEAHEISLIEDDTYSALADGPAPLKAIKAWDRSGNVIYCASLNKTIAPGLRLGWMTG 359 Query: 357 GKWHERVKMLKFAYTRANEEWTQITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGY 416 G+W ERV+MLKFA +R N+ W+Q+TAA + S AYDRH+R LR +L+EQRE+MAEAIAG Sbjct: 360 GRWQERVEMLKFAQSRPNDSWSQVTAARLLSSGAYDRHIRTLRQTLREQRERMAEAIAGC 419 Query: 417 FPPETRLSVPNGGVGLWVELPRGLSSKAVFAAALNQGIGVSPGVIFSNSDRFDHYLRLCC 476 FP TRLSVP GGV +WVELP +SS A+F AL GI ++PG +FSN +RFDHY R+C Sbjct: 420 FPAGTRLSVPAGGVAMWVELPVSVSSMALFETALAHGIRIAPGTMFSNLNRFDHYFRICF 479 Query: 477 GKPFTHELDQALRKLGGIVERM 498 G P+T E++ AL +LG + ++ Sbjct: 480 GLPYTAEVETALAQLGRLAHQL 501 >ref|YP_003746640.1| fused transcriptional regulator aminotransferase, gntr mocr domains 2-aminoadipate transaminase [Ralstonia solanacearum CFBP2957] emb|CBJ44054.1| putative fused transcriptional regulator aminotransferase, GntR MocR domains 2-aminoadipate transaminase [Ralstonia solanacearum CFBP2957] Length = 493 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 302/474 (63%), Positives = 358/474 (75%), Gaps = 1/474 (0%) Query: 27 IYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPRS 86 +YR LA+HYL A++SG L PG RMPSVR LMR H VSLSTALQ RHLE GWLEAR RS Sbjct: 20 LYRTLADHYLGAMRSGALTPGQRMPSVRTLMRTHSVSLSTALQVCRHLEAEGWLEARERS 79 Query: 87 GYFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQAPTIDLSGMTCAPE 146 GYFVRQPRRA + PV EP + P DPA YVG+H +VS +AR Q +DLSG + A Sbjct: 80 GYFVRQPRRALLAPVKEPEVATP-DPAAYVGVHARVSAIVARGQQARARVDLSGASGAAS 138 Query: 147 LYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGADDVVVTHGC 206 LY AL A + LR +P LLT A+ NG+ + VARRAL G+++ DDVVVTHGC Sbjct: 139 LYPSAALNRIATQMLRARPLLLTQAVTPNGHPDLQTAVARRALEMGVQVAPDDVVVTHGC 198 Query: 207 IEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISIEALELAIQ 266 IEA+NLALRAVAQ GDT+AVESPTY+GLLQ LE LGMRA+EIPTSP+TGIS+EALE+A+Q Sbjct: 199 IEAVNLALRAVAQPGDTVAVESPTYYGLLQVLECLGMRAVEIPTSPRTGISLEALEMAVQ 258 Query: 267 TYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELADGDVAPSAA 326 YGNI+AVVVVP LQNPLG IMPDA K RL A CE +PLIEDD YS LADG A Sbjct: 259 AYGNIRAVVVVPNLQNPLGSIMPDAAKRRLAAFCEAHGIPLIEDDTYSPLADGPAPLKAI 318 Query: 327 KVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEEWTQITAANYM 386 K WDRSGNVIYCASLNK +APG+RLGWMT G+W ERV+MLKFA +R N+ W+Q+TAA + Sbjct: 319 KAWDRSGNVIYCASLNKTIAPGLRLGWMTGGRWQERVEMLKFAQSRPNDSWSQVTAARLL 378 Query: 387 GSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVELPRGLSSKAVF 446 S AYDRH+R LR +L+EQRE+MAE IAG FP TRLSVP GGV +WVELP +SS A+F Sbjct: 379 SSGAYDRHIRTLRQTLREQRERMAEMIAGCFPAGTRLSVPAGGVAMWVELPANVSSMALF 438 Query: 447 AAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLGGIVERMPG 500 AAL GI ++PG +FSN +RFDHY R+C G P+T E++ AL +LG + + G Sbjct: 439 EAALAHGIRIAPGTMFSNLNRFDHYFRICFGLPYTAEVEAALAQLGRLAHALAG 492