BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0281.p (518 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775165.1| GGDEF family protein [Herbaspirillum seroped... 771 0.0 ref|ZP_06842743.1| diguanylate cyclase [Burkholderia sp. Ch1-1] ... 698 0.0 ref|YP_553571.1| diguanylate cyclase [Burkholderia xenovorans LB... 697 0.0 ref|YP_001888672.1| diguanylate cyclase [Burkholderia phytofirma... 688 0.0 ref|YP_004232088.1| diguanylate cyclase [Burkholderia sp. CCGE10... 684 0.0 >ref|YP_003775165.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63257.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 502 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/479 (76%), Positives = 416/479 (86%) Query: 36 LVNAEMFELAPVSMWLEDFSGVKKLLEAWREAGVTDLRSYLQADLSRVHECTLNIRVLQV 95 L E F+L PVS+W ED+SG+K+L + WR AGVTDLRSYL+ D +R H C + IRV+ V Sbjct: 21 LSEQETFDLTPVSLWKEDYSGLKRLFDQWRAAGVTDLRSYLRQDHARAHACAMQIRVVDV 80 Query: 96 NSKTLQLFEADNLAHLIANLDKVFRDDMLHTHIEELLQVWEGKHEFSSHSVNYTLSGKRL 155 N +TL+ +EA +L HL+ANLDKVFRDDML T I+E+ Q+WEG+ FSS++VNYTL GKRL Sbjct: 81 NRRTLEWYEARDLEHLVANLDKVFRDDMLETFIDEMAQLWEGRSHFSSYTVNYTLGGKRL 140 Query: 156 DIQLNARILPGYEDSWERVLLAVENVTERETARRKLTHSEDYARGLFEYSPISLWVEDFS 215 DIQL+ RI+PG E+SWE VLLA+ENVTERETAR+KL+ SE+YARGLFEYSPISLWVEDFS Sbjct: 141 DIQLSGRIMPGSEESWEYVLLAIENVTERETARKKLSRSENYARGLFEYSPISLWVEDFS 200 Query: 216 AVKRLFGDLRQIGIKDFRVFTDVHPEFVERCMQEIRVIDVNQQTLTMFHAPDKQTLLSRL 275 VKRLF DL +IGI DFR FTDVHPEFVERCMQEIRVIDVN QTL+MF APDK TLLSRL Sbjct: 201 QVKRLFNDLHRIGITDFRTFTDVHPEFVERCMQEIRVIDVNLQTLSMFCAPDKATLLSRL 260 Query: 276 SEVFRDDMRPHFNEQLGELWHGNLFHQREVVNYALNGEQLHVHLQFSVFPGHEENWDLVL 335 S+VFRDDMR HFNEQL ELW+GNL HQREVVNYALNGE LHVHLQFSVFPGHEE+WDLVL Sbjct: 261 SDVFRDDMRQHFNEQLIELWNGNLLHQREVVNYALNGETLHVHLQFSVFPGHEEHWDLVL 320 Query: 336 VALTDITARKKAEAYLEFLGKHDELTKLHNRAFMVDEMNRLERKGPLPVSVIMADLNGLK 395 VALTDITARKKAEAYLEFLGKHDELTKLHNRA+MVDE+NRLERKGP PVSVI+ADLNGLK Sbjct: 321 VALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVDELNRLERKGPFPVSVIVADLNGLK 380 Query: 396 EVNDQLGHAAGDALLRRIGEVLGKAADRPIHAARIGGDEFAILMPATDERGAIAMMENIQ 455 +VND+LGHAAGDALLRR+GEVL KA +RP AR GGDEFAIL+PATDERG + +ME +Q Sbjct: 381 QVNDELGHAAGDALLRRVGEVLDKAVERPCSVARTGGDEFAILLPATDERGCVLLMEQVQ 440 Query: 456 SLIDINNQYYSGSPLSLSMGSATSQHGERLETTVQRADALMYEDKRSYYAKTPGNERRH 514 L+++NNQYYSG PLSLSMG+AT+ GERLE VQRAD+LMYE KR YYA +P ERRH Sbjct: 441 KLLEVNNQYYSGVPLSLSMGAATALPGERLEQVVQRADSLMYEAKRQYYATSPTLERRH 499 >ref|ZP_06842743.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gb|EFG69702.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 495 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/486 (68%), Positives = 393/486 (80%), Gaps = 3/486 (0%) Query: 26 PDNAVTADDELVNAEMFELAPVSMWLEDFSGVKKLLEAWREAGVTDLRSYLQADLSRVHE 85 P A+D ++EMFELAPVS+WLEDFSGV+ L EAWR GVTDLR++ A+ V + Sbjct: 6 PRGPAPAND---DSEMFELAPVSLWLEDFSGVRALFEAWRANGVTDLRAHFAANPDCVAQ 62 Query: 86 CTLNIRVLQVNSKTLQLFEADNLAHLIANLDKVFRDDMLHTHIEELLQVWEGKHEFSSHS 145 C +IRV++VN KTL FEA + L NL VFRDDML TH+EEL Q+W G+ +F+S + Sbjct: 63 CAHSIRVIKVNQKTLTQFEAADFEALNGNLASVFRDDMLKTHLEELCQLWAGQSQFTSQT 122 Query: 146 VNYTLSGKRLDIQLNARILPGYEDSWERVLLAVENVTERETARRKLTHSEDYARGLFEYS 205 VNYTL G+RLD+ L +LPG+E W+RVL++VE++TE E AR ++T +E Y RGLFEYS Sbjct: 123 VNYTLGGRRLDVLLKGAVLPGHEARWDRVLVSVEDITELEGARHRVTLAEQYVRGLFEYS 182 Query: 206 PISLWVEDFSAVKRLFGDLRQIGIKDFRVFTDVHPEFVERCMQEIRVIDVNQQTLTMFHA 265 P+SLWVEDFSAVKRL D R GI DFRVFTDVHPEFVERCMQEI V+DVNQ TL MF A Sbjct: 183 PVSLWVEDFSAVKRLLDDARAAGINDFRVFTDVHPEFVERCMQEIHVLDVNQHTLDMFAA 242 Query: 266 PDKQTLLSRLSEVFRDDMRPHFNEQLGELWHGNLFHQREVVNYALNGEQLHVHLQFSVFP 325 DK+TLL+RL++VFRDDMRPHF EQL +LW G LF QREV+NY+L+G ++HVHLQFSV P Sbjct: 243 KDKKTLLARLTDVFRDDMRPHFREQLIDLWDGKLFQQREVLNYSLDGSEVHVHLQFSVLP 302 Query: 326 GHEENWDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAFMVDEMNRLERKGPLPVS 385 GHE+NWDLVLVALTDITARKKAEAYLEFLGKHD LTKL NR+F VDE+NRLERKGP PV+ Sbjct: 303 GHEKNWDLVLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVT 362 Query: 386 VIMADLNGLKEVNDQLGHAAGDALLRRIGEVLGKAADRPIHAARIGGDEFAILMPATDER 445 +IMADLNGLK VNDQLGHAAGDALLRR GEVL KA + P HAARIGGDEFAILMP TDER Sbjct: 363 IIMADLNGLKRVNDQLGHAAGDALLRRAGEVLAKATEAPFHAARIGGDEFAILMPDTDER 422 Query: 446 GAIAMMENIQSLIDINNQYYSGSPLSLSMGSATSQHGERLETTVQRADALMYEDKRSYYA 505 G +AM++ I+ LI++NNQ+Y GSPLS SMG+AT Q G+RLE VQRAD LMYE+KR+ YA Sbjct: 423 GGVAMVDAIRQLIELNNQFYPGSPLSFSMGAATCQRGDRLEAGVQRADLLMYEEKRATYA 482 Query: 506 KTPGNE 511 P + Sbjct: 483 SQPATD 488 >ref|YP_553571.1| diguanylate cyclase [Burkholderia xenovorans LB400] gb|ABE34221.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 495 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/483 (68%), Positives = 392/483 (81%), Gaps = 3/483 (0%) Query: 26 PDNAVTADDELVNAEMFELAPVSMWLEDFSGVKKLLEAWREAGVTDLRSYLQADLSRVHE 85 P A+D ++EMFELAPVS+WLEDFSGV+ L EAWR GVTDLR++ A+ V + Sbjct: 6 PRGPAPAND---DSEMFELAPVSLWLEDFSGVRALFEAWRADGVTDLRAHFAANPDCVAQ 62 Query: 86 CTLNIRVLQVNSKTLQLFEADNLAHLIANLDKVFRDDMLHTHIEELLQVWEGKHEFSSHS 145 C +IRV++VN KTL FEA + L NL VFRDDML TH+EEL Q+W G+ +F+S + Sbjct: 63 CAHSIRVIKVNQKTLTQFEAADFEALNGNLASVFRDDMLKTHLEELCQLWAGQSQFTSQT 122 Query: 146 VNYTLSGKRLDIQLNARILPGYEDSWERVLLAVENVTERETARRKLTHSEDYARGLFEYS 205 VNYTL G+RLD+ L +LPG+E W+RVL++VE++TE E AR ++T +E Y RGLFEYS Sbjct: 123 VNYTLGGRRLDVLLKGAVLPGHEARWDRVLVSVEDITELEGARHRVTLAEQYVRGLFEYS 182 Query: 206 PISLWVEDFSAVKRLFGDLRQIGIKDFRVFTDVHPEFVERCMQEIRVIDVNQQTLTMFHA 265 P+SLWVEDFSAVKRL D R GI DFRVFTDVHPEFVERCMQEI V+DVNQ TL MF A Sbjct: 183 PVSLWVEDFSAVKRLLDDARAAGINDFRVFTDVHPEFVERCMQEIHVLDVNQHTLDMFAA 242 Query: 266 PDKQTLLSRLSEVFRDDMRPHFNEQLGELWHGNLFHQREVVNYALNGEQLHVHLQFSVFP 325 DK+TLL+RL++VFRDDMRPHF EQL +LW G LF QREV+NY+L+G ++HVHLQFSV P Sbjct: 243 KDKKTLLARLTDVFRDDMRPHFREQLIDLWDGKLFQQREVLNYSLDGSEVHVHLQFSVLP 302 Query: 326 GHEENWDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAFMVDEMNRLERKGPLPVS 385 GHE+NWDLVLVALTDITARKKAEAYLEFLGKHD LTKL NR+F VDE+NRLERKGP PV+ Sbjct: 303 GHEKNWDLVLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVT 362 Query: 386 VIMADLNGLKEVNDQLGHAAGDALLRRIGEVLGKAADRPIHAARIGGDEFAILMPATDER 445 +IMADLNGLK VNDQLGHAAGDALLRR GEVL KA + P HAARIGGDEFAILMP TDER Sbjct: 363 IIMADLNGLKRVNDQLGHAAGDALLRRAGEVLAKATETPFHAARIGGDEFAILMPDTDER 422 Query: 446 GAIAMMENIQSLIDINNQYYSGSPLSLSMGSATSQHGERLETTVQRADALMYEDKRSYYA 505 G IAM++ I+ LI++NNQ+Y GSPLS SMG+AT Q G+RLE VQRAD LMYE+KR+ YA Sbjct: 423 GGIAMVDAIRQLIELNNQFYPGSPLSFSMGAATCQRGDRLEAGVQRADLLMYEEKRATYA 482 Query: 506 KTP 508 P Sbjct: 483 NQP 485 >ref|YP_001888672.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gb|ACD19302.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 492 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/486 (67%), Positives = 391/486 (80%), Gaps = 3/486 (0%) Query: 26 PDNAVTADDELVNAEMFELAPVSMWLEDFSGVKKLLEAWREAGVTDLRSYLQADLSRVHE 85 P A+D ++EMFELAPVS+WLEDFSGV+ L +AWR GVTDLR++ A+ V + Sbjct: 6 PRGPAPAND---DSEMFELAPVSLWLEDFSGVRSLFDAWRADGVTDLRAHFAANPDCVAQ 62 Query: 86 CTLNIRVLQVNSKTLQLFEADNLAHLIANLDKVFRDDMLHTHIEELLQVWEGKHEFSSHS 145 C +IRV++VN KTL FEA + L +NL VFRDDML TH+EEL Q+W G+ +F+S + Sbjct: 63 CAHSIRVIKVNQKTLTQFEAADFDALTSNLASVFRDDMLKTHLEELCQLWAGQSQFTSQT 122 Query: 146 VNYTLSGKRLDIQLNARILPGYEDSWERVLLAVENVTERETARRKLTHSEDYARGLFEYS 205 VNYTL G+RLD+ L +LPG+E W+RVL++VE++TE E AR ++T +E Y RGLFEYS Sbjct: 123 VNYTLGGRRLDVLLKGAVLPGHEARWDRVLVSVEDITELEGARHRVTLAEQYVRGLFEYS 182 Query: 206 PISLWVEDFSAVKRLFGDLRQIGIKDFRVFTDVHPEFVERCMQEIRVIDVNQQTLTMFHA 265 P+SLWVEDFSAVKRL + R GI DFRVFTDVHPEFVERCMQEI V+DVNQ TL MF A Sbjct: 183 PVSLWVEDFSAVKRLLDEARAAGINDFRVFTDVHPEFVERCMQEIHVLDVNQHTLDMFAA 242 Query: 266 PDKQTLLSRLSEVFRDDMRPHFNEQLGELWHGNLFHQREVVNYALNGEQLHVHLQFSVFP 325 DK+TLLSRL++VFRDDMRPHF EQL +LW G LF QREV+NY+L+G ++HVHLQFSV P Sbjct: 243 KDKKTLLSRLTDVFRDDMRPHFREQLVDLWDGKLFQQREVLNYSLDGNEVHVHLQFSVLP 302 Query: 326 GHEENWDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAFMVDEMNRLERKGPLPVS 385 GHE+ WDLVLVALTDITARKKAEAYLEFLGKHD LTKL NR+F VDE+NRLERKGP PV+ Sbjct: 303 GHEKTWDLVLVALTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVT 362 Query: 386 VIMADLNGLKEVNDQLGHAAGDALLRRIGEVLGKAADRPIHAARIGGDEFAILMPATDER 445 +IMADLNGLK VNDQLGHAAGDALLRR GEVL KA + P HAARIGGDEFAILMP TDER Sbjct: 363 IIMADLNGLKRVNDQLGHAAGDALLRRAGEVLAKATETPFHAARIGGDEFAILMPDTDER 422 Query: 446 GAIAMMENIQSLIDINNQYYSGSPLSLSMGSATSQHGERLETTVQRADALMYEDKRSYYA 505 G AM++ I+ L+++NNQ+Y GS LS SMG+AT Q G+RLE VQRAD LMYE+KR+ YA Sbjct: 423 GGAAMVDAIRQLVELNNQFYPGSLLSFSMGAATCQRGDRLEAGVQRADLLMYEEKRATYA 482 Query: 506 KTPGNE 511 P + Sbjct: 483 SQPAGD 488 >ref|YP_004232088.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gb|ADX59028.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 492 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/468 (69%), Positives = 384/468 (82%) Query: 38 NAEMFELAPVSMWLEDFSGVKKLLEAWREAGVTDLRSYLQADLSRVHECTLNIRVLQVNS 97 +++MF+LAPVS+W+EDFSGV+ L +AWR GVTDLR+Y + RV +C +IRV++VN Sbjct: 15 DSKMFDLAPVSLWVEDFSGVRDLFDAWRTEGVTDLRAYFKQAPERVAQCAHSIRVVKVNQ 74 Query: 98 KTLQLFEADNLAHLIANLDKVFRDDMLHTHIEELLQVWEGKHEFSSHSVNYTLSGKRLDI 157 KTL FEA + L NL VFRDDML TH+EEL Q+W G+ F+S +VNYTL G+RLD+ Sbjct: 75 KTLTQFEAADFDTLNGNLAAVFRDDMLKTHLEELCQLWAGQLHFTSQTVNYTLGGRRLDV 134 Query: 158 QLNARILPGYEDSWERVLLAVENVTERETARRKLTHSEDYARGLFEYSPISLWVEDFSAV 217 L +LPG+E+ W+RVL++VE++TE E AR ++T +E YARGLFE+SP+SLWVEDFSAV Sbjct: 135 LLKGSVLPGHEERWDRVLVSVEDITELEGARHRVTLAEQYARGLFEHSPVSLWVEDFSAV 194 Query: 218 KRLFGDLRQIGIKDFRVFTDVHPEFVERCMQEIRVIDVNQQTLTMFHAPDKQTLLSRLSE 277 K+L R GI DFRVFTDVHPEFVERCMQEI V+DVNQ T+ MF APDK+TLL+RL E Sbjct: 195 KQLLDQARAAGISDFRVFTDVHPEFVERCMQEIHVLDVNQHTIEMFAAPDKKTLLARLPE 254 Query: 278 VFRDDMRPHFNEQLGELWHGNLFHQREVVNYALNGEQLHVHLQFSVFPGHEENWDLVLVA 337 VFRDDMRPHF EQL +LW G LF QREV+NY+L+G+++HVHLQFSV PGHE NWDLVLVA Sbjct: 255 VFRDDMRPHFREQLLDLWDGKLFQQREVLNYSLDGDEVHVHLQFSVLPGHEANWDLVLVA 314 Query: 338 LTDITARKKAEAYLEFLGKHDELTKLHNRAFMVDEMNRLERKGPLPVSVIMADLNGLKEV 397 LTDITARKKAEAYLEFLGKHD LTKL NR+F VDE+NRLERKGP PV++IMADLNGLK V Sbjct: 315 LTDITARKKAEAYLEFLGKHDVLTKLRNRSFYVDELNRLERKGPWPVTIIMADLNGLKRV 374 Query: 398 NDQLGHAAGDALLRRIGEVLGKAADRPIHAARIGGDEFAILMPATDERGAIAMMENIQSL 457 NDQLGHAAGDALLRR GEVL KA + P AARIGGDEFAILMP TDERG AM++ I L Sbjct: 375 NDQLGHAAGDALLRRAGEVLAKAMEPPFQAARIGGDEFAILMPNTDERGGAAMLDAICQL 434 Query: 458 IDINNQYYSGSPLSLSMGSATSQHGERLETTVQRADALMYEDKRSYYA 505 +D+NNQ+Y GSPLS SMG AT Q G+RLE VQRAD LMYE+KRS+YA Sbjct: 435 VDMNNQFYPGSPLSFSMGMATCQRGDRLEAGVQRADLLMYEEKRSHYA 482