BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0270.p (439 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777189.1| enzyme with a TIM-barrel fold protein [Herba... 232 9e-59 ref|YP_004751413.1| hypothetical protein CFU_0756 [Collimonas fu... 225 1e-56 ref|YP_003604098.1| alanine racemase domain protein [Burkholderi... 219 5e-55 ref|ZP_08275312.1| hypothetical protein IMCC9480_164 [Oxalobacte... 217 3e-54 ref|ZP_04579859.1| conserved hypothetical protein [Oxalobacter f... 217 3e-54 >ref|YP_003777189.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae SmR1] gb|ADJ65281.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 124/193 (64%), Positives = 143/193 (74%) Query: 205 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTAPEA 264 AAA+ AGR + LLAVSK F +VL+AV AGQ AFGENY+QEAL+KIAAL L AP+ Sbjct: 17 AAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEALEKIAALPLLAPDV 76 Query: 265 QVAWHFIGPIQSNKTRQIAENFDWVHSVDREKIARRLAEQRPPGLPPLNICLQVNISDED 324 + WHFIGPIQSNKTR IAE+FDWVHSVDR KIA+RL+EQRP L LN+CLQVNIS ED Sbjct: 77 PLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAALGALNVCLQVNISGED 136 Query: 325 SKSGLSPDELLPVARAVAALPGLRLRGLMAIPAPTEVEEEQRAAFRRLRELAALLTDSGI 384 SKSGL P EL VA VA LPGL+LRGLMAIPAP+E +QRAAF +R L A L G+ Sbjct: 137 SKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAAFAAVRSLLAQLQAQGL 196 Query: 385 ACDNNDSPYNIDV 397 A D + D+ Sbjct: 197 ALDTLSMGMSADL 209 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/81 (66%), Positives = 63/81 (77%) Query: 10 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTAPEA 69 AAA+ AGR + LLAVSK F +VL+AV AGQ AFGENY+QEAL+KIAAL L AP+ Sbjct: 17 AAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEALEKIAALPLLAPDV 76 Query: 70 QVAWHFIGPIQSNKTRQIAEN 90 + WHFIGPIQSNKTR IAE+ Sbjct: 77 PLQWHFIGPIQSNKTRPIAEH 97 >ref|YP_004751413.1| hypothetical protein CFU_0756 [Collimonas fungivorans Ter331] gb|AEK60590.1| hypothetical protein CFU_0756 [Collimonas fungivorans Ter331] Length = 264 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/178 (64%), Positives = 136/178 (76%), Gaps = 7/178 (3%) Query: 205 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLT---- 260 A A A R P + LLAVSK F A +VL+AV AGQ AFGENY+QEAL K+A ++L Sbjct: 32 ATAITASRRPDSVALLAVSKTFGADAVLEAVAAGQRAFGENYLQEALTKMAEVELKLALK 91 Query: 261 ---APEAQVAWHFIGPIQSNKTRQIAENFDWVHSVDREKIARRLAEQRPPGLPPLNICLQ 317 + + WHFIGPIQSNKTR IAE+FDWVH+VDREKIA+RL++QRPP L PLNICLQ Sbjct: 92 SGEGDDVLLEWHFIGPIQSNKTRAIAEHFDWVHTVDREKIAQRLSQQRPPQLAPLNICLQ 151 Query: 318 VNISDEDSKSGLSPDELLPVARAVAALPGLRLRGLMAIPAPTEVEEEQRAAFRRLREL 375 VNIS E SKSGL+P E+ VARA+A LPGL+LRGLMAIP PT+ E+Q AAFRR R+L Sbjct: 152 VNISGEASKSGLAPAEVKDVARAIAGLPGLKLRGLMAIPEPTDDLEKQHAAFRRTRQL 209 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/88 (55%), Positives = 59/88 (67%), Gaps = 7/88 (7%) Query: 10 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLT---- 65 A A A R P + LLAVSK F A +VL+AV AGQ AFGENY+QEAL K+A ++L Sbjct: 32 ATAITASRRPDSVALLAVSKTFGADAVLEAVAAGQRAFGENYLQEALTKMAEVELKLALK 91 Query: 66 ---APEAQVAWHFIGPIQSNKTRQIAEN 90 + + WHFIGPIQSNKTR IAE+ Sbjct: 92 SGEGDDVLLEWHFIGPIQSNKTRAIAEH 119 >ref|YP_003604098.1| alanine racemase domain protein [Burkholderia sp. CCGE1002] gb|ADG14587.1| alanine racemase domain protein [Burkholderia sp. CCGE1002] Length = 240 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 114/183 (62%), Positives = 136/183 (74%), Gaps = 2/183 (1%) Query: 206 AAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTAPEAQ 265 AAQAAGR+ Q ++LLAVSK F A +V DA AGQ AFGENYVQEALDKI L A Sbjct: 26 AAQAAGRDAQSVMLLAVSKTFPADAVRDAHAAGQRAFGENYVQEALDKIQTL--ADLRAS 83 Query: 266 VAWHFIGPIQSNKTRQIAENFDWVHSVDREKIARRLAEQRPPGLPPLNICLQVNISDEDS 325 + WHFIGP+QSNKTR +AE+FDWVHSVDR KIA+RL+EQRP LPPLN+CLQVN+S E S Sbjct: 84 LEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNVCLQVNVSGEAS 143 Query: 326 KSGLSPDELLPVARAVAALPGLRLRGLMAIPAPTEVEEEQRAAFRRLRELAALLTDSGIA 385 KSG++PDE +A + ALP L+LRGLM+IP P + QRA R+LREL L + G+A Sbjct: 144 KSGVAPDEAAAIAHQITALPKLKLRGLMSIPEPAGDLDAQRAPHRQLRELFERLRNDGLA 203 Query: 386 CDN 388 D Sbjct: 204 LDT 206 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/84 (63%), Positives = 61/84 (72%), Gaps = 2/84 (2%) Query: 7 RPPAAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTA 66 R AAQAAGR+ Q ++LLAVSK F A +V DA AGQ AFGENYVQEALDKI L Sbjct: 22 RIAKAAQAAGRDAQSVMLLAVSKTFPADAVRDAHAAGQRAFGENYVQEALDKIQT--LAD 79 Query: 67 PEAQVAWHFIGPIQSNKTRQIAEN 90 A + WHFIGP+QSNKTR +AE+ Sbjct: 80 LRASLEWHFIGPLQSNKTRPVAEH 103 >ref|ZP_08275312.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31216.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium IMCC9480] Length = 233 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/184 (67%), Positives = 143/184 (77%) Query: 205 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTAPEA 264 AAAQA R P I LLAVSK FDAA+VL+A AGQ AFGENY+QEALDKIAA++L PE Sbjct: 17 AAAQAVSRLPHSITLLAVSKTFDAAAVLEAAAAGQRAFGENYLQEALDKIAAVRLAQPEL 76 Query: 265 QVAWHFIGPIQSNKTRQIAENFDWVHSVDREKIARRLAEQRPPGLPPLNICLQVNISDED 324 + WHFIGPIQSNKTR IAE+FDWVHSV+REKIARRL++QRP GLPPLNICLQVNIS E Sbjct: 77 ILEWHFIGPIQSNKTRPIAESFDWVHSVEREKIARRLSDQRPAGLPPLNICLQVNISGEA 136 Query: 325 SKSGLSPDELLPVARAVAALPGLRLRGLMAIPAPTEVEEEQRAAFRRLRELAALLTDSGI 384 SKSG+ E L VA+A+AA+P L LRGLMAIP P+ V EQRAAFR+L L +G+ Sbjct: 137 SKSGVPAGEALAVAQAIAAMPRLGLRGLMAIPEPSTVVAEQRAAFRQLHVLFEQCRAAGL 196 Query: 385 ACDN 388 D Sbjct: 197 PMDT 200 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/81 (71%), Positives = 65/81 (80%) Query: 10 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTAPEA 69 AAAQA R P I LLAVSK FDAA+VL+A AGQ AFGENY+QEALDKIAA++L PE Sbjct: 17 AAAQAVSRLPHSITLLAVSKTFDAAAVLEAAAAGQRAFGENYLQEALDKIAAVRLAQPEL 76 Query: 70 QVAWHFIGPIQSNKTRQIAEN 90 + WHFIGPIQSNKTR IAE+ Sbjct: 77 ILEWHFIGPIQSNKTRPIAES 97 >ref|ZP_04579859.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gb|EEO30832.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 236 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 109/195 (55%), Positives = 136/195 (69%) Query: 205 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTAPEA 264 AAA A R P + LLAVSK +L+A AGQ AFGENY QEA+ KI +++ + P+ Sbjct: 17 AAASKANRGPHTVHLLAVSKTRPPEDILEAAEAGQLAFGENYEQEAVSKIESIRQSRPDL 76 Query: 265 QVAWHFIGPIQSNKTRQIAENFDWVHSVDREKIARRLAEQRPPGLPPLNICLQVNISDED 324 ++ WHFIGPIQSNKTR IAE+FDWVHSVDREKIARRL+EQRP LPPLN+CLQVNIS E Sbjct: 77 KLEWHFIGPIQSNKTRSIAEHFDWVHSVDREKIARRLSEQRPENLPPLNVCLQVNISKEK 136 Query: 325 SKSGLSPDELLPVARAVAALPGLRLRGLMAIPAPTEVEEEQRAAFRRLRELAALLTDSGI 384 +KSG+ P+E+ +A+AV+A+P LRLRGLMAIP P +QR F ++ L L SG Sbjct: 137 TKSGVLPEEVSVLAKAVSAMPNLRLRGLMAIPEPESDPVKQREPFSAMKTLFDQLVQSGY 196 Query: 385 ACDNNDSPYNIDVXT 399 D + D+ T Sbjct: 197 DLDTLSMGMSDDMET 211 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/81 (55%), Positives = 57/81 (70%) Query: 10 AAAQAAGRNPQDILLLAVSKFFDAASVLDAVHAGQTAFGENYVQEALDKIAALKLTAPEA 69 AAA A R P + LLAVSK +L+A AGQ AFGENY QEA+ KI +++ + P+ Sbjct: 17 AAASKANRGPHTVHLLAVSKTRPPEDILEAAEAGQLAFGENYEQEAVSKIESIRQSRPDL 76 Query: 70 QVAWHFIGPIQSNKTRQIAEN 90 ++ WHFIGPIQSNKTR IAE+ Sbjct: 77 KLEWHFIGPIQSNKTRSIAEH 97