BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0260.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_554856.1| RuBisCO-like protein [Burkholderia xenovorans L... 418 e-115 ref|ZP_06844556.1| Ribulose-bisphosphate carboxylase [Burkholder... 417 e-115 ref|YP_001890886.1| RuBisCO-like protein [Burkholderia phytofirm... 417 e-115 pdb|3NWR|A Chain A, Crystal Structure Of A Rubisco-Like Protein ... 416 e-114 ref|YP_002943858.1| RuBisCO-like protein [Variovorax paradoxus S... 410 e-113 >ref|YP_554856.1| RuBisCO-like protein [Burkholderia xenovorans LB400] gb|ABE35506.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Burkholderia xenovorans LB400] Length = 432 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/269 (72%), Positives = 228/269 (84%), Gaps = 2/269 (0%) Query: 1 MRLLSLSLPEHYRRQFDMPRHGIAGTRKLTGVAQAPLLGTIIKPNVGLSAVETGELVTQL 60 +RLLSL LP YR +F++PRHG+AGTR LT V P++GTIIKPNVGLSA ET LV +L Sbjct: 127 VRLLSLRLPASYRARFELPRHGVAGTRALTDVKDRPMIGTIIKPNVGLSAAETAALVREL 186 Query: 61 CEAGVDFIKDDEVCANPVHAPLEERVREVMKRVRAYQDKSGRRVMVAFNITDELDAMRRH 120 CEAGVDFIKDDEVCANP HAPL ERVR VM VR Y+++SGR VMVAFNITD+LDAMRRH Sbjct: 187 CEAGVDFIKDDEVCANPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNITDDLDAMRRH 246 Query: 121 ADLVEREGGSCIMVGLNWCGFSALQSLRRSSGLAIHGHRNGFGMMSRQPVLGMSFPAYQS 180 A+LVEREGGSC+M +NWCGFSA+QSLRR++ L +H HRNG+GMMSR P LGMSF AYQ+ Sbjct: 247 AELVEREGGSCVMASINWCGFSAIQSLRRTTPLVLHAHRNGYGMMSRDPALGMSFQAYQT 306 Query: 181 LWRLSGVDHLHVHGLDGKFSEFNDEVVQSARDCLTPMAPG--DEVMPVFSSGQWAGTVPA 238 LWRLSGVDH+HVHGL GKF++ + EV++SARDC TP+A G D V+P FSSGQWAGTV A Sbjct: 307 LWRLSGVDHMHVHGLAGKFAQSDAEVIESARDCATPLAAGCDDAVLPAFSSGQWAGTVQA 366 Query: 239 TFAAVNSTDVIFLSGGGILAHPDGASAGV 267 TF AV STD++F+SGGGILAHPDG +AGV Sbjct: 367 TFDAVRSTDLLFMSGGGILAHPDGPAAGV 395 >ref|ZP_06844556.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. Ch1-1] gb|EFG67882.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. Ch1-1] Length = 432 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/269 (72%), Positives = 227/269 (84%), Gaps = 2/269 (0%) Query: 1 MRLLSLSLPEHYRRQFDMPRHGIAGTRKLTGVAQAPLLGTIIKPNVGLSAVETGELVTQL 60 MRLLSL LP YR +F++PRHG+AGTR LT V P++GTIIKPNVGLSA ET LV +L Sbjct: 127 MRLLSLRLPASYRARFELPRHGVAGTRALTEVKDRPMIGTIIKPNVGLSAAETAALVREL 186 Query: 61 CEAGVDFIKDDEVCANPVHAPLEERVREVMKRVRAYQDKSGRRVMVAFNITDELDAMRRH 120 CEAGVDFIKDDEVCANP HAPL ERVR VM VR Y+++SGR VMVAFNITD+LDAMRRH Sbjct: 187 CEAGVDFIKDDEVCANPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNITDDLDAMRRH 246 Query: 121 ADLVEREGGSCIMVGLNWCGFSALQSLRRSSGLAIHGHRNGFGMMSRQPVLGMSFPAYQS 180 A+LVEREGG C+M +NWCGFSA+QSLRR++ L +H HRNG+GMMSR P LGMSF AYQ+ Sbjct: 247 AELVEREGGGCVMASINWCGFSAIQSLRRATPLVLHAHRNGYGMMSRDPALGMSFQAYQT 306 Query: 181 LWRLSGVDHLHVHGLDGKFSEFNDEVVQSARDCLTPMAPG--DEVMPVFSSGQWAGTVPA 238 LWRLSGVDH+HVHGL GKF++ + EV++SARDC TP+A G D V+P FSSGQWAGTV A Sbjct: 307 LWRLSGVDHMHVHGLAGKFAQSDAEVIESARDCATPLAAGCDDAVLPAFSSGQWAGTVQA 366 Query: 239 TFAAVNSTDVIFLSGGGILAHPDGASAGV 267 TF AV STD++F+SGGGILAHPDG +AGV Sbjct: 367 TFDAVRSTDLLFMSGGGILAHPDGPAAGV 395 >ref|YP_001890886.1| RuBisCO-like protein [Burkholderia phytofirmans PsJN] gb|ACD21515.1| Ribulose-bisphosphate carboxylase [Burkholderia phytofirmans PsJN] Length = 432 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/269 (71%), Positives = 227/269 (84%), Gaps = 2/269 (0%) Query: 1 MRLLSLSLPEHYRRQFDMPRHGIAGTRKLTGVAQAPLLGTIIKPNVGLSAVETGELVTQL 60 MRLLSL LP YR++F++PRHG+AGTR LT V P++GTIIKPNVGLSA ET LV L Sbjct: 127 MRLLSLRLPASYRKRFELPRHGVAGTRALTEVKDRPMIGTIIKPNVGLSAAETAALVRDL 186 Query: 61 CEAGVDFIKDDEVCANPVHAPLEERVREVMKRVRAYQDKSGRRVMVAFNITDELDAMRRH 120 CEAGVDFIKDDEVCANP HAPL ERVR VM VR Y+++SGR VMVAFNITD+LDAMRRH Sbjct: 187 CEAGVDFIKDDEVCANPAHAPLAERVRAVMAEVRRYRERSGRSVMVAFNITDDLDAMRRH 246 Query: 121 ADLVEREGGSCIMVGLNWCGFSALQSLRRSSGLAIHGHRNGFGMMSRQPVLGMSFPAYQS 180 A+LVE+EGG C+M +NWCGFSA+Q+LRR++ L +H HRNG+GMMSR P LGMSF AYQ+ Sbjct: 247 AELVEQEGGDCVMASINWCGFSAIQTLRRATPLVLHAHRNGYGMMSRDPALGMSFQAYQT 306 Query: 181 LWRLSGVDHLHVHGLDGKFSEFNDEVVQSARDCLTPMAPG--DEVMPVFSSGQWAGTVPA 238 LWRLSGVDH+HVHGL GKF++ + EV++SARDC TP+A G D V+P FSSGQWAGTV A Sbjct: 307 LWRLSGVDHMHVHGLAGKFAQSDAEVIESARDCATPLAAGCDDTVLPAFSSGQWAGTVQA 366 Query: 239 TFAAVNSTDVIFLSGGGILAHPDGASAGV 267 TF AV STD++F+SGGGILAHPDG +AGV Sbjct: 367 TFDAVRSTDLLFMSGGGILAHPDGPAAGV 395 >pdb|3NWR|A Chain A, Crystal Structure Of A Rubisco-Like Protein From Burkholderia Fungorum Length = 432 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/269 (72%), Positives = 227/269 (84%), Gaps = 2/269 (0%) Query: 1 MRLLSLSLPEHYRRQFDMPRHGIAGTRKLTGVAQAPLLGTIIKPNVGLSAVETGELVTQL 60 +RLLSL LP YR +F++PRHG+AGTR LT V P++GTIIKPNVGLSA ET LV +L Sbjct: 127 VRLLSLRLPASYRARFELPRHGVAGTRALTDVKDRPMIGTIIKPNVGLSAAETAALVREL 186 Query: 61 CEAGVDFIKDDEVCANPVHAPLEERVREVMKRVRAYQDKSGRRVMVAFNITDELDAMRRH 120 CEAGVDFI DDEVCANP HAPL ERVR VM VR Y+++SGR VMVAFNITD+LDAMRRH Sbjct: 187 CEAGVDFIXDDEVCANPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNITDDLDAMRRH 246 Query: 121 ADLVEREGGSCIMVGLNWCGFSALQSLRRSSGLAIHGHRNGFGMMSRQPVLGMSFPAYQS 180 A+LVEREGGSC+M +NWCGFSA+QSLRR++ L +H HRNG+GMMSR P LGMSF AYQ+ Sbjct: 247 AELVEREGGSCVMASINWCGFSAIQSLRRTTPLVLHAHRNGYGMMSRDPALGMSFQAYQT 306 Query: 181 LWRLSGVDHLHVHGLDGKFSEFNDEVVQSARDCLTPMAPG--DEVMPVFSSGQWAGTVPA 238 LWRLSGVDH+HVHGL GKF++ + EV++SARDC TP+A G D V+P FSSGQWAGTV A Sbjct: 307 LWRLSGVDHMHVHGLAGKFAQSDAEVIESARDCATPLAAGCDDAVLPAFSSGQWAGTVQA 366 Query: 239 TFAAVNSTDVIFLSGGGILAHPDGASAGV 267 TF AV STD++F+SGGGILAHPDG +AGV Sbjct: 367 TFDAVRSTDLLFMSGGGILAHPDGPAAGV 395 >ref|YP_002943858.1| RuBisCO-like protein [Variovorax paradoxus S110] gb|ACS18592.1| Ribulose-bisphosphate carboxylase [Variovorax paradoxus S110] Length = 423 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 192/269 (71%), Positives = 227/269 (84%), Gaps = 2/269 (0%) Query: 1 MRLLSLSLPEHYRRQFDMPRHGIAGTRKLTGVAQAPLLGTIIKPNVGLSAVETGELVTQL 60 +RL SL LP YR QF+MPR GIAGTR++TGVA L+GTIIKPNVGLSA ET ELV +L Sbjct: 119 LRLESLQLPAAYRAQFEMPRAGIAGTRRITGVASGALVGTIIKPNVGLSAGETAELVARL 178 Query: 61 CEAGVDFIKDDEVCANPVHAPLEERVREVMKRVRAYQDKSGRRVMVAFNITDELDAMRRH 120 C AGVDFIKDDEVCANP HAPL ERV VM VRA+Q ++G+ VMVAFNITDE DAM+RH Sbjct: 179 CAAGVDFIKDDEVCANPAHAPLAERVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKRH 238 Query: 121 ADLVEREGGSCIMVGLNWCGFSALQSLRRSSGLAIHGHRNGFGMMSRQPVLGMSFPAYQS 180 ADLVEREGGSC+M LNWCG S +Q+LRR +GLA+HGHRNG+G +SR P+LG+SF AYQ+ Sbjct: 239 ADLVEREGGSCVMASLNWCGHSGMQTLRRHTGLALHGHRNGYGALSRHPLLGISFQAYQT 298 Query: 181 LWRLSGVDHLHVHGLDGKFSEFNDEVVQSARDCLTPM--APGDEVMPVFSSGQWAGTVPA 238 LWRL+GVDH+HVHGL GKFS+ + EV++SARDC TP+ A D VMP FSSGQWAGTVPA Sbjct: 299 LWRLAGVDHMHVHGLQGKFSQPDSEVIESARDCFTPLTDAADDRVMPAFSSGQWAGTVPA 358 Query: 239 TFAAVNSTDVIFLSGGGILAHPDGASAGV 267 T+AA+ S D++F++GGGILAHPDGA+AGV Sbjct: 359 TWAAICSDDLLFMAGGGILAHPDGAAAGV 387