BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0254.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751915.1| DNA-directed RNA polymerase specialized sigm... 335 2e-90 ref|YP_003775155.1| RNA polymerase sigma-70 factor, ECF subfamil... 327 6e-88 ref|ZP_08276308.1| DNA-directed RNA polymerase specialized sigma... 318 2e-85 ref|YP_001353841.1| ECF subfamily RNA polymerase sigma factor [J... 310 7e-83 ref|YP_001894966.1| RNA polymerase factor sigma-70 [Burkholderia... 307 6e-82 >ref|YP_004751915.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Collimonas fungivorans Ter331] gb|AEK61092.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Collimonas fungivorans Ter331] Length = 189 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 157/189 (83%), Positives = 177/189 (93%) Query: 1 MATDKELSDFLENVERRAFKQAVYAVRKDEVALDIVQDAMIKLAEKYGDKPANELPLLFQ 60 MATDKELSDFLENVERRAFKQAVYAVRKDE ALDIVQDAMIKLAEKYGDKPA ELP+LFQ Sbjct: 1 MATDKELSDFLENVERRAFKQAVYAVRKDESALDIVQDAMIKLAEKYGDKPAAELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRTTWVSLFSSIGRDSENQEDFDLLESYEAEEGTQASESSADKVE 120 RILQNTIHD+FRREKVR TWVSLFSS+GR++ N ED+D+LE++E++E +QA+ESSA+K+E Sbjct: 61 RILQNTIHDYFRREKVRNTWVSLFSSMGRNNANDEDYDVLETFESDEDSQATESSANKLE 120 Query: 121 REQTLALIDAEVQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHALAQ 180 REQ L +ID EVQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH LA Sbjct: 121 REQILNIIDEEVQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAL 180 Query: 181 ALRAKGITL 189 +L+AKGI+L Sbjct: 181 SLKAKGISL 189 >ref|YP_003775155.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63247.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 327 bits (838), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 163/192 (84%), Positives = 177/192 (92%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLENVERRAFKQAVYAVRKDEVALDIVQDAMIKLAEKYGDKPANELPLLFQ 60 MATDKELSDFLE+VERRAFKQAVYAVRKDE ALDIVQDAMIKLAEKYGDKP +ELP+LFQ Sbjct: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRTTWVSLFSSIGRDSENQEDFD---LLESYEAEEGTQASESSAD 117 RILQNTIHDFFRREKVR TWVSLFSS G + + E + LLES E+E+G++A+ESSAD Sbjct: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 Query: 118 KVEREQTLALIDAEVQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 177 KVER+QTL LIDAE+QKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA Sbjct: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 Query: 178 LAQALRAKGITL 189 LAQALRAKGI+L Sbjct: 181 LAQALRAKGISL 192 >ref|ZP_08276308.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF30220.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein [Oxalobacteraceae bacterium IMCC9480] Length = 189 Score = 318 bits (815), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 150/189 (79%), Positives = 170/189 (89%) Query: 1 MATDKELSDFLENVERRAFKQAVYAVRKDEVALDIVQDAMIKLAEKYGDKPANELPLLFQ 60 MATDKELSDFLENVERRAFKQA+YAVRK+E ALDIVQDAMIKL++ YGDKP ELPLLFQ Sbjct: 1 MATDKELSDFLENVERRAFKQAIYAVRKEESALDIVQDAMIKLSQSYGDKPPAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRTTWVSLFSSIGRDSENQEDFDLLESYEAEEGTQASESSADKVE 120 RILQNTIHD+FRREKVR TWV+LFSS+ + + ++F+LL+ Y A++ QASES ADK++ Sbjct: 61 RILQNTIHDYFRREKVRNTWVTLFSSMTGNGDAGDEFELLDHYNADDNAQASESGADKLQ 120 Query: 121 REQTLALIDAEVQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHALAQ 180 REQTL+ ID EVQKLP RQREAFLMRYWQD+DVAETAAAMGCSEGSVKTHCSRATH LAQ Sbjct: 121 REQTLSAIDHEVQKLPARQREAFLMRYWQDLDVAETAAAMGCSEGSVKTHCSRATHTLAQ 180 Query: 181 ALRAKGITL 189 AL+AKGITL Sbjct: 181 ALKAKGITL 189 >ref|YP_001353841.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] gb|ABR89356.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium sp. Marseille] Length = 189 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 147/189 (77%), Positives = 167/189 (88%) Query: 1 MATDKELSDFLENVERRAFKQAVYAVRKDEVALDIVQDAMIKLAEKYGDKPANELPLLFQ 60 MATDKELSDFLE+VERRAFKQAVYAVRK+E ALDIVQDAMIKLAEKYGDKPA ELP+LFQ Sbjct: 1 MATDKELSDFLEDVERRAFKQAVYAVRKEESALDIVQDAMIKLAEKYGDKPAPELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRTTWVSLFSSIGRDSENQEDFDLLESYEAEEGTQASESSADKVE 120 RILQNTI D+FRREKVRT+W+SLFSS G E+QE+FD ++ EAEEG+ +E+ K+E Sbjct: 61 RILQNTIRDYFRREKVRTSWISLFSSFGNKQEDQENFDAMDMIEAEEGSYGAETGLVKLE 120 Query: 121 REQTLALIDAEVQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHALAQ 180 R+Q L I+ EVQ LP+RQREAFLMRYWQD++VAETAA MGCSEGSVKTHCSRATHALAQ Sbjct: 121 RKQVLEFIEHEVQNLPSRQREAFLMRYWQDLNVAETAAVMGCSEGSVKTHCSRATHALAQ 180 Query: 181 ALRAKGITL 189 AL+AKGI L Sbjct: 181 ALKAKGIYL 189 >ref|YP_001894966.1| RNA polymerase factor sigma-70 [Burkholderia phytofirmans PsJN] gb|ACD15742.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phytofirmans PsJN] Length = 187 Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 146/189 (77%), Positives = 166/189 (87%), Gaps = 2/189 (1%) Query: 1 MATDKELSDFLENVERRAFKQAVYAVRKDEVALDIVQDAMIKLAEKYGDKPANELPLLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+ +LDIVQDAMIKLAEKYGD+PA ELPLLFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRTTWVSLFSSIGRDSENQEDFDLLESYEAEEGTQASESSADKVE 120 RILQN +HD+FRR KVR TWVSLFSS+G + + EDFD LE++EA++G+ SES+ K+E Sbjct: 61 RILQNAMHDYFRRAKVRNTWVSLFSSLG--NADDEDFDPLETFEAQQGSAGSESNEQKLE 118 Query: 121 REQTLALIDAEVQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHALAQ 180 REQ L LID E+QKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH LAQ Sbjct: 119 REQVLQLIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAQ 178 Query: 181 ALRAKGITL 189 AL+AKGITL Sbjct: 179 ALKAKGITL 187