BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0244.p         (217 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775146.1| ribosomal small subunit pseudouridine syntha...   342   3e-92
ref|YP_004754846.1| ribosomal small subunit pseudouridine syntha...   340   8e-92
ref|YP_001099979.1| 16S rRNA pseudouridylate 516 synthase [Hermi...   334   6e-90
ref|YP_001353640.1| ribosomal small subunit pseudouridine syntha...   332   3e-89
ref|YP_003523874.1| pseudouridine synthase [Sideroxydans lithotr...   307   6e-82

>ref|YP_003775146.1| ribosomal small subunit pseudouridine synthase A [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63238.1| ribosomal small subunit pseudouridine synthase A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  342 bits (876), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 163/194 (84%), Positives = 176/194 (90%)

Query: 23  PDTEGLAFTLFDEEWVYREHVYIALNKPANFECSRKPSHHPGVLTILPEQFSWRDVQPVG 82
           PDT+ L  T+F+EEW YREHVYIA+NKP N ECSRKPSHHPGVLT+LPEQF+WRDVQPVG
Sbjct: 44  PDTKDLVLTIFEEEWEYREHVYIAINKPPNIECSRKPSHHPGVLTLLPEQFTWRDVQPVG 103

Query: 83  RLDHDTTGLLLMSDDGAFIHAQSSPKRHVPKVYAATTHDAVTDELIAQLLGGVQLHDEPA 142
           RLDHDTTGLLLMSDDGAFIHAQSSPKRHVPKVYAATT + VT+ LIAQL  GVQLHDEPA
Sbjct: 104 RLDHDTTGLLLMSDDGAFIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPA 163

Query: 143 PLAAVTCRKLDAHLLEIVLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDALELEEGE 202
           PLAA  CR+L  +LLEIVLEQGKYHQVKRMLAAAGNHCSAL+RTAIGGLQL+AL LEEGE
Sbjct: 164 PLAATRCRQLGENLLEIVLEQGKYHQVKRMLAAAGNHCSALQRTAIGGLQLEALALEEGE 223

Query: 203 WCYLDAEQLGLLVP 216
           W YLDAEQ+ LLVP
Sbjct: 224 WTYLDAEQMALLVP 237


>ref|YP_004754846.1| ribosomal small subunit pseudouridine synthase A [Collimonas
           fungivorans Ter331]
 gb|AEK64023.1| Ribosomal small subunit pseudouridine synthase A [Collimonas
           fungivorans Ter331]
          Length = 238

 Score =  340 bits (872), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 160/196 (81%), Positives = 174/196 (88%)

Query: 22  APDTEGLAFTLFDEEWVYREHVYIALNKPANFECSRKPSHHPGVLTILPEQFSWRDVQPV 81
            PDT+GL FTLF+EEW YREHVYI LNKPA+ ECSRKPSHHPGVL+ILPEQFSWRDVQPV
Sbjct: 43  TPDTDGLVFTLFEEEWTYREHVYIVLNKPADIECSRKPSHHPGVLSILPEQFSWRDVQPV 102

Query: 82  GRLDHDTTGLLLMSDDGAFIHAQSSPKRHVPKVYAATTHDAVTDELIAQLLGGVQLHDEP 141
           GRLDHDTTGLLLMSDDG+FIHAQSSPKRHVPK+Y ATTHD VT+EL+  LL GV+LHDEP
Sbjct: 103 GRLDHDTTGLLLMSDDGSFIHAQSSPKRHVPKLYVATTHDPVTEELVQSLLAGVKLHDEP 162

Query: 142 APLAAVTCRKLDAHLLEIVLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDALELEEG 201
             LAAV+CR L  H +EIVLEQGKYHQVKRML AAGNHC+ALRRTAIGGL L+ALELE G
Sbjct: 163 QTLAAVSCRVLGTHEIEIVLEQGKYHQVKRMLVAAGNHCTALRRTAIGGLTLEALELEIG 222

Query: 202 EWCYLDAEQLGLLVPA 217
           EWCYL+ E L LLVPA
Sbjct: 223 EWCYLEPEHLALLVPA 238


>ref|YP_001099979.1| 16S rRNA pseudouridylate 516 synthase [Herminiimonas
           arsenicoxydans]
 emb|CAL61854.1| putative 16S rRNA uridine-516 pseudouridylate synthase
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  334 bits (856), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 160/196 (81%), Positives = 171/196 (87%)

Query: 22  APDTEGLAFTLFDEEWVYREHVYIALNKPANFECSRKPSHHPGVLTILPEQFSWRDVQPV 81
           A DT  L FT+FDE W YREHVYI LNKPANFECSRKPSHHPGVLT+LPEQF+WRD+QPV
Sbjct: 43  AVDTTDLEFTIFDEVWRYREHVYIVLNKPANFECSRKPSHHPGVLTLLPEQFTWRDLQPV 102

Query: 82  GRLDHDTTGLLLMSDDGAFIHAQSSPKRHVPKVYAATTHDAVTDELIAQLLGGVQLHDEP 141
           GRLDHDTTG+LLMSDDG FIHAQSSPKRH+PK+Y ATTHD VT ELIAQLLGGVQLHDEP
Sbjct: 103 GRLDHDTTGMLLMSDDGPFIHAQSSPKRHIPKIYVATTHDPVTPELIAQLLGGVQLHDEP 162

Query: 142 APLAAVTCRKLDAHLLEIVLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDALELEEG 201
           APLAA TCR L  H +EIVLEQGKYHQVKRMLAAAGNHCSAL R  IG L L++L LEEG
Sbjct: 163 APLAAQTCRMLAEHQIEIVLEQGKYHQVKRMLAAAGNHCSALNRAEIGELTLESLGLEEG 222

Query: 202 EWCYLDAEQLGLLVPA 217
           EW YLDAEQL LL P+
Sbjct: 223 EWTYLDAEQLALLRPS 238


>ref|YP_001353640.1| ribosomal small subunit pseudouridine synthase A protein
           [Janthinobacterium sp. Marseille]
 gb|ABR89883.1| ribosomal small subunit pseudouridine synthase A protein
           [Janthinobacterium sp. Marseille]
          Length = 238

 Score =  332 bits (850), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/196 (81%), Positives = 171/196 (87%)

Query: 22  APDTEGLAFTLFDEEWVYREHVYIALNKPANFECSRKPSHHPGVLTILPEQFSWRDVQPV 81
           A DT  L FT+FDE W YR+HVYI LNKPANFECSRKPSHHPGVLT+LPEQF+WR++QPV
Sbjct: 43  AFDTSDLEFTIFDEVWRYRQHVYIVLNKPANFECSRKPSHHPGVLTLLPEQFTWRELQPV 102

Query: 82  GRLDHDTTGLLLMSDDGAFIHAQSSPKRHVPKVYAATTHDAVTDELIAQLLGGVQLHDEP 141
           GRLDHDTTG+LLMSDDG FIHAQSSPKRH+PKVY ATTHD VT ELIAQLLGGVQLHDEP
Sbjct: 103 GRLDHDTTGMLLMSDDGPFIHAQSSPKRHIPKVYVATTHDPVTPELIAQLLGGVQLHDEP 162

Query: 142 APLAAVTCRKLDAHLLEIVLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDALELEEG 201
           APLAA TCR L A+ LEIVLEQGKYHQVKRMLAAAGNHCSALRR AIG L L++LEL+EG
Sbjct: 163 APLAAQTCRMLGANELEIVLEQGKYHQVKRMLAAAGNHCSALRRVAIGALTLESLELDEG 222

Query: 202 EWCYLDAEQLGLLVPA 217
           EW YL   QL LL P 
Sbjct: 223 EWAYLTDAQLALLAPT 238


>ref|YP_003523874.1| pseudouridine synthase [Sideroxydans lithotrophicus ES-1]
 gb|ADE11487.1| pseudouridine synthase [Sideroxydans lithotrophicus ES-1]
          Length = 241

 Score =  307 bits (787), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 146/193 (75%), Positives = 167/193 (86%)

Query: 22  APDTEGLAFTLFDEEWVYREHVYIALNKPANFECSRKPSHHPGVLTILPEQFSWRDVQPV 81
           A +T+ L F+++ E W +REHVYIALNKPA++ECSRKPSHHPGVL++LPEQF+ RDVQPV
Sbjct: 43  AFETDNLEFSVYGESWRFREHVYIALNKPADYECSRKPSHHPGVLSLLPEQFALRDVQPV 102

Query: 82  GRLDHDTTGLLLMSDDGAFIHAQSSPKRHVPKVYAATTHDAVTDELIAQLLGGVQLHDEP 141
           GRLDHDTTGLLLMSDDGAFIHAQSSPKRH+PKVY ATTHD VT +L+ QL+ GV+LHDEP
Sbjct: 103 GRLDHDTTGLLLMSDDGAFIHAQSSPKRHIPKVYVATTHDPVTPQLVRQLMSGVKLHDEP 162

Query: 142 APLAAVTCRKLDAHLLEIVLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDALELEEG 201
           APLAAV C  LD   L+IVLEQGKYHQVKRMLAAAGNHC+ALRRT IG L+L+AL L EG
Sbjct: 163 APLAAVVCNMLDTCQLKIVLEQGKYHQVKRMLAAAGNHCTALRRTEIGKLRLEALGLAEG 222

Query: 202 EWCYLDAEQLGLL 214
           EWCYL   +L LL
Sbjct: 223 EWCYLGEAELALL 235