BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0243.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum ... 393 e-107 ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacter... 390 e-107 ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacteri... 380 e-104 ref|YP_004753138.1| tRNA:Cm32/Um32 methyltransferase [Collimonas... 379 e-103 ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Hermin... 377 e-102 >ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/263 (73%), Positives = 220/263 (83%), Gaps = 10/263 (3%) Query: 1 MNTPKIDNSVFKRLRFVLVETSSPGNIGAAARAIKTMGFGELVLVNPRFPNAVQEDAAIA 60 MN S+F RLRFVLV TSSPGNIG+AARAIKTMGF ELVLVNPRFP+AV+ED A+A Sbjct: 1 MNKQVSGQSLFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVA 60 Query: 61 FASGAQDVLSGARIVTSIEEALQDCNFAAAISARLREFSPPVVSPRTIAEQIAGDVGLNA 120 FASGA DVL ARIV S+EEALQ CNFAAA+SARLREFSPPVVSPR +A Q++ D GLNA Sbjct: 61 FASGALDVLQNARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA 120 Query: 121 ALIFGNERFGLPNELVQQCNVLINIPANPDYSSLNLAQAVQVLAYECRMAEL-------- 172 AL+FGNERFGLPNE+VQ+CN L+NIPANP+YSSLNL+QAVQVLAYECRM EL Sbjct: 121 ALLFGNERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQ 180 Query: 173 --GDRKQATDIGFQGEMAGVAEIEGMFRHLEEALVAIEFLKPDSPKKLMPRLKRLFARTQ 230 GD + ++GF G+ A VAEIEGMF HLE+ALVAI+FL PD+PKKLMPRLKR+F+R Q Sbjct: 181 TSGDARSPGEVGFHGQSASVAEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQ 240 Query: 231 LETEEVNILRGIARQILTPKQDR 253 LETEEVNILRGIARQIL PKQ + Sbjct: 241 LETEEVNILRGIARQILEPKQAK 263 >ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/247 (75%), Positives = 216/247 (87%) Query: 1 MNTPKIDNSVFKRLRFVLVETSSPGNIGAAARAIKTMGFGELVLVNPRFPNAVQEDAAIA 60 MNT +ID S+F RLRFVLVETS PGNIGAAARA+KTMGF +LVLVNPRF +A Q+D A+A Sbjct: 1 MNTAQIDTSLFTRLRFVLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVA 60 Query: 61 FASGAQDVLSGARIVTSIEEALQDCNFAAAISARLREFSPPVVSPRTIAEQIAGDVGLNA 120 FASGAQDVL+ ARIV SIEEAL DCN+AAA+SARLREFSPPV PR A+++AG+ L Sbjct: 61 FASGAQDVLANARIVGSIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAALRV 120 Query: 121 ALIFGNERFGLPNELVQQCNVLINIPANPDYSSLNLAQAVQVLAYECRMAELGDRKQATD 180 AL+ GNERFGLPNE+V++CNVLINIPANP YSSLNL QAVQVLAYECRMA LGD AT+ Sbjct: 121 ALVLGNERFGLPNEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAALGDDAIATE 180 Query: 181 IGFQGEMAGVAEIEGMFRHLEEALVAIEFLKPDSPKKLMPRLKRLFARTQLETEEVNILR 240 +GF G+ A + ++EGM++HLE+ALVAI+FLKPDSPKKLMPRLKRLFART LETEEVNILR Sbjct: 181 VGFHGDAASLTQVEGMYQHLEQALVAIDFLKPDSPKKLMPRLKRLFARTGLETEEVNILR 240 Query: 241 GIARQIL 247 GIA+QIL Sbjct: 241 GIAKQIL 247 >ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille] Length = 253 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/250 (73%), Positives = 216/250 (86%) Query: 1 MNTPKIDNSVFKRLRFVLVETSSPGNIGAAARAIKTMGFGELVLVNPRFPNAVQEDAAIA 60 M P+ D +F RLRF+LVETS PGNIGAAARAIK MGF ELVLVNPRFP+A ++ A+A Sbjct: 1 MMQPQTDTPLFNRLRFILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVA 60 Query: 61 FASGAQDVLSGARIVTSIEEALQDCNFAAAISARLREFSPPVVSPRTIAEQIAGDVGLNA 120 FASGAQD+L ARIV SIEEAL DCNFAAA++ARLREFSPPV+SPR +A ++ + GL A Sbjct: 61 FASGAQDILQAARIVGSIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEETGLRA 120 Query: 121 ALIFGNERFGLPNELVQQCNVLINIPANPDYSSLNLAQAVQVLAYECRMAELGDRKQATD 180 A++FGNERFGLPNE+V++CNVLINI ANPDYSSLNLAQAVQVLAYE RMA +G+ + ATD Sbjct: 121 AVVFGNERFGLPNEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAVGETRAATD 180 Query: 181 IGFQGEMAGVAEIEGMFRHLEEALVAIEFLKPDSPKKLMPRLKRLFARTQLETEEVNILR 240 IGFQGE A +A+I+GM+ HLE+ALVAI+FL ++PKKLMPRLKRLF+RTQLETEEVNILR Sbjct: 181 IGFQGEAASMAQIDGMYAHLEQALVAIDFLDANNPKKLMPRLKRLFSRTQLETEEVNILR 240 Query: 241 GIARQILTPK 250 GIA+QIL K Sbjct: 241 GIAKQILAQK 250 >ref|YP_004753138.1| tRNA:Cm32/Um32 methyltransferase [Collimonas fungivorans Ter331] gb|AEK62315.1| tRNA:Cm32/Um32 methyltransferase [Collimonas fungivorans Ter331] Length = 258 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/253 (71%), Positives = 217/253 (85%), Gaps = 2/253 (0%) Query: 1 MNTPKIDNSVFKRLRFVLVETSSPGNIGAAARAIKTMGFGELVLVNPRFPNAVQEDAAIA 60 MN KI+ S+F RLRFVLVETSSPGN+GAAARAIKTMGF EL+LVNPRFP+ +Q D A+A Sbjct: 1 MNQAKINTSLFNRLRFVLVETSSPGNVGAAARAIKTMGFSELILVNPRFPDVLQRDEAVA 60 Query: 61 FASGAQDVLSGARIVTSIEEALQDCNFAAAISARLREFSPPVVSPRTIAEQIAGDVGLNA 120 FASGAQD+L+ ARIV S+E+AL+ CNFAAA+SARLREFSPP+ +PR +A Q+ D LNA Sbjct: 61 FASGAQDILAAARIVDSVEQALEGCNFAAALSARLREFSPPLTAPRALAAQLVADASLNA 120 Query: 121 ALIFGNERFGLPNELVQQCNVLINIPANPDYSSLNLAQAVQVLAYECRMAELGDRKQAT- 179 A+IFG+ER+GLPNE+V++CNVL+NIPANP+YSSLNLAQAVQVLAYECR+A D AT Sbjct: 121 AVIFGSERYGLPNEIVEKCNVLLNIPANPEYSSLNLAQAVQVLAYECRVAASEDLSPATG 180 Query: 180 -DIGFQGEMAGVAEIEGMFRHLEEALVAIEFLKPDSPKKLMPRLKRLFARTQLETEEVNI 238 ++GFQG A +A+I+GMF HLE+ALV IEFL P SPKKLMPRLKRLF+RTQLETEEVNI Sbjct: 181 GEVGFQGNAASLADIDGMFAHLEQALVEIEFLDPASPKKLMPRLKRLFSRTQLETEEVNI 240 Query: 239 LRGIARQILTPKQ 251 LRGIA QIL ++ Sbjct: 241 LRGIASQILNKRR 253 >ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans] Length = 248 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/244 (75%), Positives = 216/244 (88%), Gaps = 1/244 (0%) Query: 10 VFKRLRFVLVETSSPGNIGAAARAIKTMGFGELVLVNPRFPNAVQEDAAIAFASGAQDVL 69 +F RLRFVLVETS PGNIGAAARAIK MGF ELVLVNPRFP+A ++ AIAFASGAQD+L Sbjct: 3 LFNRLRFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDIL 62 Query: 70 SGARIVTSIEEALQDCNFAAAISARLREFSPPVVSPRTIAEQIAGDVGLNAALIFGNERF 129 + ARIV SIEEAL DCN+AAA++ARLREFSPPV++PR +A ++A + GL AA+IFGNERF Sbjct: 63 ASARIVGSIEEALADCNYAAAVTARLREFSPPVITPRELATRLADEAGLQAAVIFGNERF 122 Query: 130 GLPNELVQQCNVLINIPANPDYSSLNLAQAVQVLAYECRMAELGDRKQA-TDIGFQGEMA 188 GLPNE+V++CNVLINIPANPDYSSLNLAQAVQVLAYE RMA + D A ++IGFQGE A Sbjct: 123 GLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMAAIVDAPSAVSNIGFQGEAA 182 Query: 189 GVAEIEGMFRHLEEALVAIEFLKPDSPKKLMPRLKRLFARTQLETEEVNILRGIARQILT 248 G+A+IEGM+ HLE+ALVAI+FL D+PKKLMPRLKRLF+RTQLETEEVNILRGIA+QIL Sbjct: 183 GMAQIEGMYAHLEQALVAIDFLDADNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQILA 242 Query: 249 PKQD 252 +++ Sbjct: 243 KQKN 246