BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0239.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGP46855.1| HxlR-like helix-turn-helix family protein 4 [Achr...   143   8e-33
gb|EFV81910.1| HxlR family Transcriptional regulator [Achromobac...   141   4e-32
ref|YP_004793036.1| HxlR family transcriptional regulator [Burkh...   140   6e-32
ref|ZP_05133928.1| transcriptional regulatory protein [Stenotrop...   137   4e-31
ref|YP_002028814.1| HxlR family transcriptional regulator [Steno...   137   6e-31

>gb|EGP46855.1| HxlR-like helix-turn-helix family protein 4 [Achromobacter
           xylosoxidans AXX-A]
          Length = 128

 Score =  143 bits (361), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 82/104 (78%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D++  ACPSR+ALEL+  KW  L+ PALA GP+RNS LLRK++GISQKM+TQTL++LER+
Sbjct: 10  DVFDAACPSRRALELISGKWVPLVLPALARGPLRNSELLRKLDGISQKMMTQTLRDLERH 69

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADL 118
           GLV R ++ T  PHV Y L+ LG SL+  L+ALD WAERHHA L
Sbjct: 70  GLVRREDMRTVPPHVRYHLTDLGTSLNVALVALDRWAERHHAQL 113


>gb|EFV81910.1| HxlR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 128

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 82/104 (78%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D++  ACPSR+ALEL+  KW  L+ PALA GP+RN+ LLRK+ GISQKM+TQTL++LER+
Sbjct: 10  DVFDAACPSRRALELISGKWVPLVLPALARGPLRNNELLRKLGGISQKMMTQTLRDLERH 69

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADL 118
           GLV R ++ T  PHV Y L+ LG+SL+  L+ALD WAERHHA L
Sbjct: 70  GLVRREDMRTVPPHVRYHLTELGKSLNVALVALDRWAERHHAQL 113


>ref|YP_004793036.1| HxlR family transcriptional regulator [Burkholderia sp. JV3]
 gb|AEM51810.1| transcriptional regulator, HxlR family [Burkholderia sp. JV3]
          Length = 119

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 82/112 (73%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D+Y+  C +R AL L+  KW +L+ PALA GP RN ALLRKIEGISQK+LTQTL++LERN
Sbjct: 6   DVYAADCSARDALALISGKWVMLLLPALAQGPQRNGALLRKIEGISQKVLTQTLRQLERN 65

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFD 126
           GLV RC+L +   HVEY L+ +  SL DTL ALD WAE +   L  ARE+FD
Sbjct: 66  GLVERCDLGSKPLHVEYRLTEVARSLVDTLTALDRWAEHNFPALDAARERFD 117


>ref|ZP_05133928.1| transcriptional regulatory protein [Stenotrophomonas sp. SKA14]
 gb|EED37989.1| transcriptional regulatory protein [Stenotrophomonas sp. SKA14]
          Length = 119

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 82/112 (73%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D+Y+  C +R AL L+  KW +L+ PALA GPMRN ALLRKIEG+SQK+LTQTL++LERN
Sbjct: 6   DVYAADCSARDALALISGKWVMLLLPALAQGPMRNGALLRKIEGLSQKVLTQTLRQLERN 65

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFD 126
           GLV RC+  +   HVEY L+ +  SL DTL ALD WAE +   L  AR++FD
Sbjct: 66  GLVERCDRGSKPLHVEYRLTEVARSLVDTLAALDRWAEHNFPALDAARDRFD 117


>ref|YP_002028814.1| HxlR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gb|ACF52131.1| transcriptional regulator, HxlR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 119

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 81/112 (72%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D+Y   C +R AL L+  KW +L+ PALA GP RN ALLRKIEGISQK+LTQTL++LERN
Sbjct: 6   DVYVADCSARDALALISGKWVMLLLPALAEGPQRNGALLRKIEGISQKVLTQTLRQLERN 65

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFD 126
           GL+ RC++ +   HVEY L+ +  +L DTL ALD WAE +   L  ARE+FD
Sbjct: 66  GLIERCDMGSKPLHVEYRLTTIARTLVDTLAALDRWAEHNFPALDAARERFD 117