BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0225.p (554 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003158678.1| NodT family RND efflux system outer membrane... 553 e-155 ref|YP_001100836.1| putative outer membrane transport protein in... 550 e-154 ref|YP_004128655.1| rnd efflux system, outer membrane lipoprotei... 527 e-147 ref|YP_003981674.1| outer membrane protein OprM 5 [Achromobacter... 527 e-147 ref|YP_002893644.1| RND efflux system, outer membrane lipoprotei... 518 e-145 >ref|YP_003158678.1| NodT family RND efflux system outer membrane lipoprotein [Desulfomicrobium baculatum DSM 4028] gb|ACU90262.1| RND efflux system, outer membrane lipoprotein, NodT family [Desulfomicrobium baculatum DSM 4028] Length = 479 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 295/462 (63%), Positives = 349/462 (75%) Query: 2 RSRLIMALAALQLGGCVSLAPDYIRPALPVPTHYPNAAAALRESAEPIGWRSYFQDAHLQ 61 R L+ A + L GC S+AP Y PALPV Y A SA IGWR YF D LQ Sbjct: 9 RGALLCIAAMILLSGCASMAPRYEAPALPVAPIYAPDNAQDGASASAIGWRDYFIDPSLQ 68 Query: 62 SLIELALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTGKPL 121 +LI+ AL N++DLR A+ RV+EARA +GI+ + FPTVG QAG DR+R P DLN+TGK L Sbjct: 69 NLIQRALDNNRDLRTAVLRVEEARAVHGIQRSELFPTVGIQAGEDRSRTPADLNMTGKTL 128 Query: 122 VSSQYQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLTLSE 181 +SQ+Q GLGMA WELDFWGRVRSL+DAALE++LA+DAARRA + L+AQVA +Y L E Sbjct: 129 FASQFQAGLGMASWELDFWGRVRSLQDAALENFLATDAARRAAALGLVAQVADSYFRLLE 188 Query: 182 LNERLFLAGQTLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQEREMQ 241 +ER+ LA QT+ASR ES+RIF RRVEVGSTSR +LTQV LLTQAQ+L AQLEQERE Q Sbjct: 189 FDERIALAHQTIASRTESFRIFTRRVEVGSTSRFSLTQVQTLLTQAQALGAQLEQEREAQ 248 Query: 242 IHRLALLVGTQLSEATLQQRLSEVEAPRRLRPGIPSDLLNNRPDIIAAEHQLRAANANIG 301 H L LLVG + Q + E R+RPG+PSDLL RPDI+AAEH+L+AANANIG Sbjct: 249 FHALTLLVGATIDPPPEQDQPGERNTLVRVRPGLPSDLLFQRPDIVAAEHRLKAANANIG 308 Query: 302 AARAAFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKLTEAR 361 AARAAFFPRIALTGS GTASAELG LF +GS AW FSP ISLP+FDGGLR++NL L E R Sbjct: 309 AARAAFFPRIALTGSLGTASAELGDLFAAGSLAWIFSPSISLPIFDGGLRSANLSLAEIR 368 Query: 362 RHIAVLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDNGSAS 421 + V NYEK +Q+AFRDV+DALSAR WL QV IA LE Q ERARLS LRYDNG+++ Sbjct: 369 LDMNVANYEKTVQAAFRDVADALSARHWLARQVSIAQAALETQTERARLSQLRYDNGASA 428 Query: 422 FLEVLDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGGAADD 463 +LEVLDAQRDLL +Q+LVQ++RAL +VSLYAALGG + D Sbjct: 429 YLEVLDAQRDLLDTEQRLVQMRRALLTSHVSLYAALGGGSMD 470 >ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] emb|CAL62715.1| Outer membrane protein oprM [Herminiimonas arsenicoxydans] Length = 502 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 301/458 (65%), Positives = 352/458 (76%) Query: 6 IMALAALQLGGCVSLAPDYIRPALPVPTHYPNAAAALRESAEPIGWRSYFQDAHLQSLIE 65 +M L L C S+AP Y PALPV HYP+ +A +GWR YF DA LQ LI Sbjct: 21 VMVAVVLALASCASMAPPYAAPALPVAAHYPSDVNQDGAAAAAMGWRDYFTDARLQDLIA 80 Query: 66 LALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTGKPLVSSQ 125 AL+N++DLR A+ RV+EARAAYGI+ A QFP + AQAG +RA VP DL+LTGKP +SSQ Sbjct: 81 QALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAHVPADLSLTGKPAMSSQ 140 Query: 126 YQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLTLSELNER 185 Y V LG+A WE+DFWGRVRSL+DAALE+YLASD ARRAV I L+AQVA +YL L EL+ER Sbjct: 141 YHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRAVTISLVAQVANSYLALCELDER 200 Query: 186 LFLAGQTLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQEREMQIHRL 245 + LA T+ASR ES RIF RRVEVGSTSRLNLTQV LL+QAQ+L AQLEQ R +Q + L Sbjct: 201 IALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTLLSQAQALGAQLEQARALQANAL 260 Query: 246 ALLVGTQLSEATLQQRLSEVEAPRRLRPGIPSDLLNNRPDIIAAEHQLRAANANIGAARA 305 LLVG L RL E + L+PG+PSDLL RPDI+AAEHQL+AA+A IGAARA Sbjct: 261 ILLVGVTLELPATSSRLDERQMLLPLQPGLPSDLLIRRPDIVAAEHQLKAAHAQIGAARA 320 Query: 306 AFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKLTEARRHIA 365 AFFPRIALTGS GTASAEL GLF +GSRAWTF+P ISLPLFD G R++NL L EARR +A Sbjct: 321 AFFPRIALTGSFGTASAELDGLFAAGSRAWTFAPSISLPLFDAGRRSNNLSLAEARRDLA 380 Query: 366 VLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDNGSASFLEV 425 V NYEK IQ+AFRDV+DAL+AR WL Q+ IA L Q ERARLS LRYDNG+A++L+V Sbjct: 381 VANYEKTIQAAFRDVADALAARQWLAQQLLIAQAALTTQTERARLSQLRYDNGAAAYLDV 440 Query: 426 LDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGGAADD 463 LDAQRDLLVA+QQLVQ++RAL + VSLYAALGG A D Sbjct: 441 LDAQRDLLVAEQQLVQIRRALLSSQVSLYAALGGGALD 478 >ref|YP_004128655.1| rnd efflux system, outer membrane lipoprotein, nodt family [Alicycliphilus denitrificans BC] gb|ADV01768.1| RND efflux system, outer membrane lipoprotein, NodT family [Alicycliphilus denitrificans BC] Length = 490 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 291/446 (65%), Positives = 338/446 (75%), Gaps = 1/446 (0%) Query: 16 GCVSLAPDYIRPALPVPTHYPNAAAALRESAEPIGWRSYFQDAHLQSLIELALQNSQDLR 75 GC +LAP Y PA+PVP Y AA A WR YF D LQ+LI AL++++DLR Sbjct: 30 GCTTLAPPYEAPAMPVPQRYAGAAEPGGAVAAATAWRDYFTDPQLQALIVQALEHNRDLR 89 Query: 76 LALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTGKPLVSSQYQVGLGMAGW 135 A RV EARAAYGI++A P VGAQA +DRAR P DL+LTG+P+V+SQYQVGLGMA W Sbjct: 90 TAALRVQEARAAYGIQSAELSPAVGAQANMDRARTPADLSLTGRPMVASQYQVGLGMASW 149 Query: 136 ELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLTLSELNERLFLAGQTLAS 195 E+DFWGRV+SL+DAALE+YLASDAAR AV + LIAQVA YL L EL+ERL LA Q+ AS Sbjct: 150 EIDFWGRVQSLRDAALENYLASDAARHAVTVSLIAQVAGGYLALRELDERLTLAEQSSAS 209 Query: 196 RAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQEREMQIHRLALLVGTQLSE 255 R ES RI +RRVEVGS SRL+LTQ+ LLTQAQ+LVAQL ER Q H L LVG+ ++ Sbjct: 210 REESLRISRRRVEVGSDSRLHLTQMQTLLTQAQALVAQLSLERARQAHALGQLVGSGVAL 269 Query: 256 ATLQQRLSEVEAPRRLRPGIPSDLLNNRPDIIAAEHQLRAANANIGAARAAFFPRIALTG 315 A RL+E + P RL G+PSDLL RPDI+AAEHQLRAA+A IGAARAAFFP I+LTG Sbjct: 270 APAAGRLAEQQMP-RLAAGLPSDLLAQRPDIVAAEHQLRAAHAQIGAARAAFFPSISLTG 328 Query: 316 SAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKLTEARRHIAVLNYEKAIQS 375 + GTASAELGGLF+ GSRAWTFSP I+LP+F GG NL L E RR +AV NYEK +Q Sbjct: 329 AFGTASAELGGLFEGGSRAWTFSPSITLPIFSGGRLKGNLALAEVRRDLAVANYEKTVQQ 388 Query: 376 AFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDNGSASFLEVLDAQRDLLVA 435 AFRDVSDAL+ R WL+ Q IA L VQ ERARLS LRYD+G+A+FL+VLDAQRDLLVA Sbjct: 389 AFRDVSDALAGRQWLERQSRIAQEALAVQTERARLSQLRYDHGAAAFLDVLDAQRDLLVA 448 Query: 436 QQQLVQLQRALAAGNVSLYAALGGAA 461 QQQ VQ QR L + VSLYAALGG A Sbjct: 449 QQQTVQAQRLLLSSQVSLYAALGGGA 474 >ref|YP_003981674.1| outer membrane protein OprM 5 [Achromobacter xylosoxidans A8] gb|ADP18959.1| outer membrane protein OprM 5 [Achromobacter xylosoxidans A8] Length = 494 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 293/456 (64%), Positives = 343/456 (75%), Gaps = 4/456 (0%) Query: 8 ALAALQLGGCVSLAPDYIRPALPVPTHY----PNAAAALRESAEPIGWRSYFQDAHLQSL 63 AL L GCVS+APDY RPALPVP Y A AA +A IGWR+YF D LQ+L Sbjct: 18 ALLTLLASGCVSMAPDYNRPALPVPAAYMAPGSEATAASAAAAAEIGWRTYFPDPALQTL 77 Query: 64 IELALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTGKPLVS 123 I AL N++DLR AL RV+EARA YGI+ A QFPT+G QA RARVPGDLNLTG+PLVS Sbjct: 78 ISSALANNRDLRRALLRVEEARALYGIQRADQFPTIGVQADGSRARVPGDLNLTGQPLVS 137 Query: 124 SQYQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLTLSELN 183 SQYQVGLGMA WELDFWGRVRSLKDAAL++YLASDAA RA + LIA+VA +YL+L EL+ Sbjct: 138 SQYQVGLGMASWELDFWGRVRSLKDAALQNYLASDAAARAATLSLIAEVADSYLSLRELD 197 Query: 184 ERLFLAGQTLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQEREMQIH 243 ERL L +T+ASR ES RIF+RR E G+ S+L+LTQV L QA++L A LEQ R Q + Sbjct: 198 ERLALTRETIASREESLRIFRRRFEEGAISKLDLTQVETLWQQAKALGADLEQTRAAQAN 257 Query: 244 RLALLVGTQLSEATLQQRLSEVEAPRRLRPGIPSDLLNNRPDIIAAEHQLRAANANIGAA 303 L LLVG L+ L L + R L G+PSDLL NRPDI+AAEHQL+AANANIGAA Sbjct: 258 ALELLVGAPLNLPRLPTHLDDDSVMRELPAGLPSDLLVNRPDIVAAEHQLKAANANIGAA 317 Query: 304 RAAFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKLTEARRH 363 RAAF P I LTG+ GTAS+EL GLF GSRAW F+P ISLP+FD G R+SNL LTEARR Sbjct: 318 RAAFLPTITLTGAFGTASSELDGLFSGGSRAWNFAPSISLPIFDAGRRSSNLDLTEARRD 377 Query: 364 IAVLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDNGSASFL 423 AV YE+ IQ+AF+DVSDALSAR WL QVD+ T+ Q+ERARL+ LRYD+G++ +L Sbjct: 378 QAVAAYEQTIQTAFKDVSDALSARYWLAEQVDVLRATVAAQSERARLAQLRYDHGASPYL 437 Query: 424 EVLDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGG 459 EVLDAQRDLL AQQ+L Q +RAL + V LYAALGG Sbjct: 438 EVLDAQRDLLAAQQKLAQTRRALLSSRVRLYAALGG 473 >ref|YP_002893644.1| RND efflux system, outer membrane lipoprotein, NodT family [Tolumonas auensis DSM 9187] gb|ACQ94058.1| RND efflux system, outer membrane lipoprotein, NodT family [Tolumonas auensis DSM 9187] Length = 495 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 279/468 (59%), Positives = 346/468 (73%), Gaps = 2/468 (0%) Query: 7 MALAALQLGGCVSLAPDYIRPALPVPTHYPNAAAALRESAE--PIGWRSYFQDAHLQSLI 64 +AL+A+ L GC+SLAP P LPVP +P + E A + W++YF D LQ LI Sbjct: 18 LALSAVVLTGCMSLAPAPDTPPLPVPEVWPGHLESSTEGAHAGELAWQAYFTDPLLQRLI 77 Query: 65 ELALQNSQDLRLALARVDEARAAYGIEAAAQFPTVGAQAGLDRARVPGDLNLTGKPLVSS 124 E AL+N++DLRLA RV+EA AA+ I+ + +FP VG A RARVPGDLN++G+ V Sbjct: 78 ETALENNRDLRLAALRVEEASAAFRIQRSDRFPAVGVGAQGGRARVPGDLNMSGRSQVGG 137 Query: 125 QYQVGLGMAGWELDFWGRVRSLKDAALESYLASDAARRAVRIDLIAQVAITYLTLSELNE 184 +Y+ +G++ WELD WGRVR+L+DAAL+ +LASDAAR+AV + LIAQVA YL L E++E Sbjct: 138 EYRAEVGLSTWELDLWGRVRNLEDAALQRWLASDAARQAVHLALIAQVADGYLGLREIDE 197 Query: 185 RLFLAGQTLASRAESYRIFKRRVEVGSTSRLNLTQVAVLLTQAQSLVAQLEQEREMQIHR 244 R+ +A QT+A+R ESYRIF+RRVEVGSTS+L+LTQV LL QAQ+L+ QLEQ R Q+H Sbjct: 198 RVAIARQTVATREESYRIFRRRVEVGSTSKLDLTQVQTLLNQAQALLTQLEQARATQLHA 257 Query: 245 LALLVGTQLSEATLQQRLSEVEAPRRLRPGIPSDLLNNRPDIIAAEHQLRAANANIGAAR 304 LALLVG + E LR G+PS+LL +RPDIIAAEHQLRA +ANIGAAR Sbjct: 258 LALLVGADPGPLPTKAPFDETTVLAELRTGLPSELLVSRPDIIAAEHQLRAGDANIGAAR 317 Query: 305 AAFFPRIALTGSAGTASAELGGLFDSGSRAWTFSPGISLPLFDGGLRNSNLKLTEARRHI 364 AAF PRIALTGS GTAS++L GLFDSGSRAWTF P +SLP+FDGG R +NL+L+E RR I Sbjct: 318 AAFLPRIALTGSFGTASSDLDGLFDSGSRAWTFMPTLSLPIFDGGRRRANLELSEVRRDI 377 Query: 365 AVLNYEKAIQSAFRDVSDALSARVWLDYQVDIAAVTLEVQAERARLSNLRYDNGSASFLE 424 AV YEK IQ+AFR+V+DALSA+ WL Q+ I LE Q+ERARL+ LRYDNGSA+FLE Sbjct: 378 AVAGYEKTIQTAFREVADALSAKYWLAEQLTIQRANLEAQSERARLAQLRYDNGSAAFLE 437 Query: 425 VLDAQRDLLVAQQQLVQLQRALAAGNVSLYAALGGAADDAAAGXSSAS 472 VLDAQRDLL A QQLVQ +RAL + V+LYAALGG A SA+ Sbjct: 438 VLDAQRDLLDAGQQLVQARRALLSSQVALYAALGGGTLTATGQAQSAT 485