BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0209.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775135.1| proline/glycine betaine ABC transporter peri... 407 e-112 ref|YP_004752113.1| glycine betaine ABC transporter substrate-bi... 381 e-104 ref|YP_004022536.1| glycine betaine-binding protein [Burkholderi... 310 2e-82 ref|YP_552352.1| glycine betaine/choline/proline ABC transporter... 306 3e-81 ref|YP_296700.1| substrate-binding region of ABC-type glycine be... 304 8e-81 >ref|YP_003775135.1| proline/glycine betaine ABC transporter periplasmic substrate-binding protein [Herbaspirillum seropedicae SmR1] emb|CAM32580.1| ABC-type proline/glycine betaine transport system, periplasmic (osmoprotectant) binding component pr [Herbaspirillum seropedicae] gb|ADJ63227.1| ABC-type proline/glycine betaine transport system, periplasmic binding component protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/263 (72%), Positives = 231/263 (87%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 L+LS MTAQYLRAKGYD +L+NGLG+TLMR A ES QLD+VW+YTGT+LIVYNH+++KLD Sbjct: 44 LLLSDMTAQYLRAKGYDTELKNGLGTTLMRSALESGQLDIVWDYTGTALIVYNHIEDKLD 103 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120 + YQ+VKELD GL WLN+S LNNTYAFAMP+ LAD+ I++L+DLA+ I ++ + G Sbjct: 104 PDQIYQKVKELDAPRGLTWLNQSELNNTYAFAMPRALADKYNIHSLQDLAKRINEDDKEG 163 Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180 G+P LMGVDYEFASRPDGL PMQ+LYGF+LDRSEVKQMDPGLVYTAL+NEQL VGLTY+S Sbjct: 164 GQPHLMGVDYEFASRPDGLGPMQQLYGFKLDRSEVKQMDPGLVYTALKNEQLFVGLTYAS 223 Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240 DGRIKGF+L+LLED+KGYFAAYKATPVVR+E+L +HP+LA+QLN L+A IDT MT++NK Sbjct: 224 DGRIKGFDLQLLEDDKGYFAAYKATPVVRQEILAKHPKLAEQLNELAAKIDTATMTELNK 283 Query: 241 RVDIDQEPIGKVVTEFLQQQGLI 263 RVDIDQEP+ KV +FL+Q GLI Sbjct: 284 RVDIDQEPVAKVAADFLKQAGLI 306 >ref|YP_004752113.1| glycine betaine ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK61290.1| Substrate-binding region of ABC-type glycine betaine transport system [Collimonas fungivorans Ter331] Length = 302 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/263 (69%), Positives = 222/263 (84%), Gaps = 1/263 (0%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 LILSSMT QYLRAKGY VDL+NGLG+T+MR+A ES Q+D+VW+YTGT+L+VYN +DEKLD Sbjct: 38 LILSSMTQQYLRAKGYAVDLKNGLGTTIMRQALESGQIDIVWDYTGTALVVYNKIDEKLD 97 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQ-EQQA 119 + +YQRVKELD + L+WL S LNNTYA A+PQ+ A+E+G+NT+EDLA I Q QQ Sbjct: 98 RDQSYQRVKELDASRKLIWLQPSELNNTYALAVPQQRAEEEGLNTIEDLANKIRQARQQD 157 Query: 120 GGKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYS 179 K LMG+D+EFASRPDGLEP+Q LYGF LDRSEVKQMD GLVYTAL N+QL+VGLTYS Sbjct: 158 PDKKYLMGMDFEFASRPDGLEPLQALYGFSLDRSEVKQMDAGLVYTALHNDQLNVGLTYS 217 Query: 180 SDGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMN 239 SDGR++GFNLKLLEDNKG+FA Y A PVVR+E+L +P+LA+QLNALSA IDT KMT+MN Sbjct: 218 SDGRVQGFNLKLLEDNKGFFAFYSAVPVVRKEILDANPKLAEQLNALSARIDTAKMTEMN 277 Query: 240 KRVDIDQEPIGKVVTEFLQQQGL 262 K+VDIDQ PI +V +FL+ +GL Sbjct: 278 KKVDIDQLPIAQVAADFLRSEGL 300 >ref|YP_004022536.1| glycine betaine-binding protein [Burkholderia rhizoxinica HKI 454] emb|CBW77017.1| Glycine betaine-binding protein [Burkholderia rhizoxinica HKI 454] Length = 300 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 147/262 (56%), Positives = 194/262 (74%), Gaps = 2/262 (0%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 L+L+ +T+QYLR++GY V+ R+GLGS LMR A E++QLD+VW+YTGT+LIVYN + EKLD Sbjct: 40 LLLAEITSQYLRSRGYTVESRSGLGSVLMRSALENRQLDIVWDYTGTALIVYNRIHEKLD 99 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120 + Y+RV++LD+ GLVWL S LNNTYA AMP + A GI+T+ LA I Q+ Sbjct: 100 PQTAYRRVRDLDKPRGLVWLKPSALNNTYALAMPSERAKRDGIHTISQLAAKIQQDDPR- 158 Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180 K +D EFA+RPDGL P+Q LY +L RS++KQMD GLVYTAL N Q GL Y++ Sbjct: 159 -KRHWFAMDAEFANRPDGLRPLQALYDLRLRRSDIKQMDSGLVYTALHNNQAMFGLVYTT 217 Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240 DGRIKGF + +L+D+ G+F AY ATPVVR +VL +HP+LA QL+ALSA I++E M++MNK Sbjct: 218 DGRIKGFGITVLDDDLGFFPAYNATPVVRRDVLDQHPELAKQLDALSAQINSEVMSEMNK 277 Query: 241 RVDIDQEPIGKVVTEFLQQQGL 262 RVDID+E I V +FL+ L Sbjct: 278 RVDIDEESISAVAADFLRTHAL 299 >ref|YP_552352.1| glycine betaine/choline/proline ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE33002.1| ABC glycine betaine/choline/proline family transporter, periplasmic ligand binding protein [Burkholderia xenovorans LB400] Length = 298 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 142/261 (54%), Positives = 190/261 (72%), Gaps = 3/261 (1%) Query: 2 ILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLDA 61 +L+ +T+QYLRAKGY +D R GLGSTL+R AQE+ Q+D+ WEYTGT+ IVYN + EKLD Sbjct: 40 VLTEITSQYLRAKGYTIDARTGLGSTLLRSAQENGQVDITWEYTGTAAIVYNKITEKLDP 99 Query: 62 EATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAGG 121 + Y+RVK LD GLVWL+ S LNNTYA +PQ++A + GI T+ LA + E + Sbjct: 100 KTMYERVKALDAKRGLVWLDCSPLNNTYALGLPQQVAQQTGIRTISQLAAKMAAEPK--- 156 Query: 122 KPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSSD 181 K + +D EFA+RPDGL+P++ YG Q R E +QMDPGLVYTAL N Q+ +GL Y++D Sbjct: 157 KKHVFAMDAEFANRPDGLKPLEAAYGMQFSREETRQMDPGLVYTALHNNQVPIGLIYTTD 216 Query: 182 GRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNKR 241 GR+KGFN+ LED++ YF AY ATPVVR+ L ++PQLA QLNALS A++ + M +MNK+ Sbjct: 217 GRVKGFNIVPLEDDRHYFPAYNATPVVRKATLDQNPQLAPQLNALSDALNNDTMLEMNKQ 276 Query: 242 VDIDQEPIGKVVTEFLQQQGL 262 VD+D P+ +V EFL+ L Sbjct: 277 VDVDGRPVREVAAEFLRTHKL 297 >ref|YP_296700.1| substrate-binding region of ABC-type glycine betaine transport system [Ralstonia eutropha JMP134] gb|AAZ61856.1| Substrate-binding region of ABC-type glycine betaine transport system [Ralstonia eutropha JMP134] Length = 315 Score = 304 bits (779), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 149/263 (56%), Positives = 191/263 (72%), Gaps = 2/263 (0%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 LILSSMT+QYLRAKG +L +GLGSTLMR+A E+ QLDVVW+YTGT+LIV+N V+EKLD Sbjct: 55 LILSSMTSQYLRAKGLGTELTSGLGSTLMRQAMENGQLDVVWDYTGTALIVFNKVEEKLD 114 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120 A+A+Y RVK LD GLVWL S +NNTYA AMP++ A G+ TL A + + + Sbjct: 115 AKASYARVKTLDAARGLVWLEPSRINNTYALAMPKQRAQASGVTTLSAYAEKMRKAGEDA 174 Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180 P VD EFA+RPDGLEP++ Y R +V Q+DPGLVYTAL+N Q+D+GL Y++ Sbjct: 175 QHP--FAVDMEFAARPDGLEPLKAQYKLPFKRRDVIQLDPGLVYTALKNNQVDMGLVYTT 232 Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240 DGR+KGF L LLED+ +F Y A PVVR+ VL +HP+LA L+ALSA +D MT+MN Sbjct: 233 DGRVKGFELVLLEDDLHFFPDYSAVPVVRKAVLDKHPELATLLDALSAKLDNASMTEMNY 292 Query: 241 RVDIDQEPIGKVVTEFLQQQGLI 263 +VDI Q+P+ KV +FL+ GLI Sbjct: 293 QVDIGQQPVDKVAADFLRSHGLI 315