BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0208.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775134.1| proline/glycine betaine ABC transporter perm... 313 1e-83 ref|YP_004752112.1| ABC glycine betaine/choline/proline family t... 284 8e-75 ref|YP_004350198.1| Amino acid ABC transporter, permease protein... 277 6e-73 ref|YP_367238.1| ABC glycinebetaine/carnitine/choline transporte... 265 4e-69 ref|YP_002153524.1| putative binding-protein-dependent transport... 264 6e-69 >ref|YP_003775134.1| proline/glycine betaine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63226.1| ABC-type proline/glycine betaine transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 157/188 (83%), Positives = 172/188 (91%) Query: 2 LAVAGLIQWIGMDVITQYRSDLIYYTGKHLQLVAWSMLLAIATGVPAGVVLSRPALGRRA 61 L +AGL+ WIG DVI +YR DLIYYTGKHL+LV SMLLA+ATG+PAG+ LSRP R A Sbjct: 16 LVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSA 75 Query: 62 EYFIQVFNIGNTIPSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPL 121 E FIQ+FNIGNTIPSIAVLALALAFFGIGN PTILALWLASLLPIVRNT+EGLKNVPA + Sbjct: 76 EKFIQIFNIGNTIPSIAVLALALAFFGIGNGPTILALWLASLLPIVRNTYEGLKNVPAAM 135 Query: 122 REAAKGIGMKPYQVLLRVELPNALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLIFPG 181 +EAA+GIGMKP+Q+LLRVELPNALPIIVGG+RTAL INVGTAPLSMLIGGESLGGLIFPG Sbjct: 136 KEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPG 195 Query: 182 IYLNNHGQ 189 IYLNNHGQ Sbjct: 196 IYLNNHGQ 203 >ref|YP_004752112.1| ABC glycine betaine/choline/proline family transporter, inner membrane subunit [Collimonas fungivorans Ter331] gb|AEK61289.1| ABC glycine betaine/choline/proline family transporter, inner membrane subunit [Collimonas fungivorans Ter331] Length = 276 Score = 284 bits (726), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 155/204 (75%), Positives = 173/204 (84%), Gaps = 1/204 (0%) Query: 2 LAVAGLIQW-IGMDVITQYRSDLIYYTGKHLQLVAWSMLLAIATGVPAGVVLSRPALGRR 60 L V I W IG VI QY+ DLIYYTG+HL LV WSM LA+ G+PAG++LSRP R Sbjct: 54 LLVVAAIGWSIGPAVIHQYQGDLIYYTGRHLVLVGWSMSLALLCGIPAGILLSRPYFSRH 113 Query: 61 AEYFIQVFNIGNTIPSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAP 120 AE ++Q+FNIGNTIPS+AVLALALA FGIG+ P ILALWLASLLPIVRNT+EGLK V Sbjct: 114 AEKWMQIFNIGNTIPSMAVLALALALFGIGDKPAILALWLASLLPIVRNTYEGLKQVSPA 173 Query: 121 LREAAKGIGMKPYQVLLRVELPNALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLIFP 180 ++EAAKGIGMKP QVL RVELPNALPIIVGG+RTAL INVGTAPLS+LIGGESLGGLIFP Sbjct: 174 MKEAAKGIGMKPLQVLFRVELPNALPIIVGGVRTALAINVGTAPLSILIGGESLGGLIFP 233 Query: 181 GIYLNNHGQLLLGAAATALLALLL 204 GIYLNNHGQLLLGA ATA+LAL+L Sbjct: 234 GIYLNNHGQLLLGATATAVLALML 257 >ref|YP_004350198.1| Amino acid ABC transporter, permease protein [Burkholderia gladioli BSR3] gb|AEA64686.1| Amino acid ABC transporter, permease protein [Burkholderia gladioli BSR3] Length = 238 Score = 277 bits (709), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 140/194 (72%), Positives = 164/194 (84%) Query: 11 IGMDVITQYRSDLIYYTGKHLQLVAWSMLLAIATGVPAGVVLSRPALGRRAEYFIQVFNI 70 IG D Q+ DL+YYTG+HL LV SM+LAIA G+PAGV LSRPAL R+AE F+QVFNI Sbjct: 26 IGADTWRQHSGDLVYYTGRHLMLVGCSMVLAIAVGIPAGVALSRPALARQAERFMQVFNI 85 Query: 71 GNTIPSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPLREAAKGIGM 130 GNT+PS+AVLA+AL FGIG+ P I+AL+LASLLPI RN +EG++NVPA LREAA+GIGM Sbjct: 86 GNTVPSLAVLAIALGIFGIGDMPAIVALFLASLLPITRNAYEGMRNVPASLREAARGIGM 145 Query: 131 KPYQVLLRVELPNALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQL 190 P+Q L RVELPNALPIIVGG+RTAL INVGTAPL+ LIG +SLG LIFPGIYL+N L Sbjct: 146 TPWQSLTRVELPNALPIIVGGVRTALAINVGTAPLAYLIGADSLGTLIFPGIYLDNQQML 205 Query: 191 LLGAAATALLALLL 204 LLGAA+TA+LALLL Sbjct: 206 LLGAASTAVLALLL 219 >ref|YP_367238.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] gb|ABB06594.1| ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit [Burkholderia sp. 383] Length = 238 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 138/198 (69%), Positives = 162/198 (81%) Query: 7 LIQWIGMDVITQYRSDLIYYTGKHLQLVAWSMLLAIATGVPAGVVLSRPALGRRAEYFIQ 66 L + IG D +Q DL YY G+H+ LV +SM LAIA GVPAGV+LSRP +AE F+Q Sbjct: 22 LARGIGADTFSQRADDLAYYAGQHMLLVVYSMALAIAVGVPAGVLLSRPRFQHQAERFMQ 81 Query: 67 VFNIGNTIPSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPLREAAK 126 VFNIGNTIPS+AVLA+AL FGIGN P I+AL+LASLLPI RNT+EG+KNVPA LREAAK Sbjct: 82 VFNIGNTIPSLAVLAIALGIFGIGNVPAIVALFLASLLPITRNTYEGMKNVPAALREAAK 141 Query: 127 GIGMKPYQVLLRVELPNALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLIFPGIYLNN 186 GIGM +Q L+RVELP+ALPIIVGG+RTAL INVGTAPL+ LIG +SLG LIFPGIYL+N Sbjct: 142 GIGMTGWQSLVRVELPDALPIIVGGVRTALAINVGTAPLAYLIGADSLGSLIFPGIYLDN 201 Query: 187 HGQLLLGAAATALLALLL 204 LLLGA+ TA+LAL+L Sbjct: 202 QPLLLLGASLTAILALVL 219 >ref|YP_002153524.1| putative binding-protein-dependent transport system protein [Burkholderia cenocepacia J2315] emb|CAR57064.1| putative binding-protein-dependent transport system component [Burkholderia cenocepacia J2315] Length = 238 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 137/198 (69%), Positives = 161/198 (81%) Query: 7 LIQWIGMDVITQYRSDLIYYTGKHLQLVAWSMLLAIATGVPAGVVLSRPALGRRAEYFIQ 66 L + IG + Q DL YY G+H+ LV +SM LAIA GVPAGV+LSRP R+AE F+Q Sbjct: 22 LARGIGAETFKQRSDDLAYYAGQHMLLVVYSMTLAIAVGVPAGVLLSRPRFQRQAERFMQ 81 Query: 67 VFNIGNTIPSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPLREAAK 126 VFNIGNTIPS+AVLA+AL FGIGN P I+AL+LASLLP+ RN +EG+KNVPA LREAAK Sbjct: 82 VFNIGNTIPSLAVLAIALGIFGIGNVPAIVALFLASLLPVTRNAYEGMKNVPAALREAAK 141 Query: 127 GIGMKPYQVLLRVELPNALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLIFPGIYLNN 186 GIGM +Q L+RVELPNALPIIVGG+RTAL INVGTAPL+ LIG +SLG LIFPGIYL+N Sbjct: 142 GIGMTGWQSLVRVELPNALPIIVGGVRTALAINVGTAPLAYLIGADSLGSLIFPGIYLDN 201 Query: 187 HGQLLLGAAATALLALLL 204 LLLGA+ TA+LAL+L Sbjct: 202 QPLLLLGASLTAILALVL 219