BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0205.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353604.1| AraC family transcriptional regulator [Janth... 330 1e-88 ref|ZP_06689770.1| AraC family transcriptional regulator [Achrom... 289 3e-76 ref|YP_004752674.1| AraC family transcriptional regulator [Colli... 281 5e-74 ref|YP_261221.2| AraC family transcriptional regulator [Pseudomo... 270 1e-70 ref|YP_003052412.1| AraC family transcriptional regulator [Methy... 268 5e-70 >ref|YP_001353604.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90689.1| transcriptional regulator, AraC family [Janthinobacterium sp. Marseille] Length = 255 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 192/253 (75%), Positives = 214/253 (84%) Query: 2 DTSNYHHMINANAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPT 61 D + Y ++ ++APAAALAIDYPHGHVI HRHAYAQLLYA+EGVL VET +GRWVVPPT Sbjct: 3 DATPYQDLVGSDAPAAALAIDYPHGHVIPPHRHAYAQLLYALEGVLTVETQDGRWVVPPT 62 Query: 62 RGVWLQPEVDHQVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPA 121 RGVWLQP+VDHQV MRGDVKMRTVFVN LPN+PQ++CVLDIP LLRELIV+A+ I P Sbjct: 63 RGVWLQPDVDHQVSMRGDVKMRTVFVNPTFLPNLPQQSCVLDIPLLLRELIVSAISITPE 122 Query: 122 LVADGRDWHLLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQL 181 L RDWHLL LLV ELRSVPVLPLYLPLPAD LR IC+ MA PD+ +V A L Sbjct: 123 LQVGSRDWHLLHLLVLELRSVPVLPLYLPLPADSRLREICQQTMAYPDEQNSVAEQAAIL 182 Query: 182 GIATRTFHRLFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMF 241 GI+TRTFHRLFLRETGMR+ HWRQQARLLLALE LARGDK+IDVAL+HGY+SQSAFAAMF Sbjct: 183 GISTRTFHRLFLRETGMRYGHWRQQARLLLALERLARGDKVIDVALEHGYSSQSAFAAMF 242 Query: 242 KKHFGIAPSRFFR 254 KKHF I+PSRFFR Sbjct: 243 KKHFDISPSRFFR 255 >ref|ZP_06689770.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF73277.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 286 Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 159/255 (62%), Positives = 195/255 (76%), Gaps = 2/255 (0%) Query: 2 DTSNYHHMINANAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPT 61 D+ Y + + APAAALA+DYP GHVI H H AQLLYAI+GV+ +E GRWVVPPT Sbjct: 25 DSPFYAAFVASGAPAAALAVDYPDGHVIAPHHHDRAQLLYAIQGVMTIEAEGGRWVVPPT 84 Query: 62 RGVWLQPEVDHQVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVG--IG 119 RGVWL+ +V H VRM G V+MRTVFV+ + +P +CVLDI PLLRELIVAAV +G Sbjct: 85 RGVWLEADVAHSVRMSGAVRMRTVFVDSRATAQLPTRSCVLDISPLLRELIVAAVDLDVG 144 Query: 120 PALVADGRDWHLLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQ 179 + RDWHLLRLL+ ELRS+PVLPLYLP+PAD LR C+ALM +PD T+D A Sbjct: 145 APARSGSRDWHLLRLLLQELRSLPVLPLYLPMPADARLRRFCDALMREPDAALTLDEWAA 204 Query: 180 QLGIATRTFHRLFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAA 239 QL ++TRT HR FL++TGMR WR+QARLLLALE+LA G +++DVAL+HGYTSQSAFAA Sbjct: 205 QLHLSTRTLHRQFLQQTGMRLGQWRRQARLLLALEHLAGGARVVDVALEHGYTSQSAFAA 264 Query: 240 MFKKHFGIAPSRFFR 254 MFKKHFG++P+ F+R Sbjct: 265 MFKKHFGVSPAAFYR 279 >ref|YP_004752674.1| AraC family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61851.1| transcriptional regulator, AraC family [Collimonas fungivorans Ter331] Length = 263 Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/259 (57%), Positives = 181/259 (69%), Gaps = 10/259 (3%) Query: 5 NYHHMINANAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRGV 64 +Y + A A A DYP GHVI LHRH+ AQLLYA GV+ V+ A GRW+VPP R V Sbjct: 6 DYQALNCAGASVVTSATDYPDGHVIPLHRHSCAQLLYATRGVMTVDAAAGRWMVPPGRAV 65 Query: 65 WLQPEVDHQVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPA--- 121 WLQ VDHQ+RM G+V +RT+ +++ P++P +CVLDI PLLRELI AA G PA Sbjct: 66 WLQAHVDHQIRMHGEVGLRTLLLDVAMSPHLPARSCVLDISPLLRELIAAAHG-NPAGYD 124 Query: 122 ------LVADGRDWHLLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVD 175 AD R+WH+L+LL+HEL SV VLPLYLPLP LR +CE LMA P T++ Sbjct: 125 ANKDANTDADARNWHMLQLLLHELASVTVLPLYLPLPLAARLRSLCELLMATPGKQVTIE 184 Query: 176 MHAQQLGIATRTFHRLFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQS 235 A QLGI+T T HRLFLR+TGMRF HWRQQARLL A+E LARG K+ A D GY+SQS Sbjct: 185 TWAGQLGISTSTLHRLFLRQTGMRFGHWRQQARLLQAMEQLARGGKVAAAAQDQGYSSQS 244 Query: 236 AFAAMFKKHFGIAPSRFFR 254 AF+AMFKKHFG P+ F+R Sbjct: 245 AFSAMFKKHFGSTPTAFYR 263 >ref|YP_261221.2| AraC family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY93385.2| transcriptional regulator, AraC family [Pseudomonas fluorescens Pf-5] Length = 276 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 125/242 (51%), Positives = 171/242 (70%) Query: 13 NAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRGVWLQPEVDH 72 + P ++A+DYP+GH I H H +QL YAIEGVLV++T GRWVVPP+RGVWLQ V+H Sbjct: 35 SMPVTSIAVDYPNGHEIPAHSHPRSQLAYAIEGVLVIDTESGRWVVPPSRGVWLQAGVEH 94 Query: 73 QVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPALVADGRDWHLL 132 +VRMRG V+MR++F+N+ + +P+ +CV+++ PLLRELI+AA +G D RD L+ Sbjct: 95 RVRMRGAVRMRSLFINVDAIAGLPEHDCVIEVSPLLRELILAAAQVGTHYSPDSRDGRLM 154 Query: 133 RLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHRLF 192 RL++ E+RS+PVLP LP P + + +C+AL P D+ T + L ++ +TFHR F Sbjct: 155 RLILDEMRSLPVLPFSLPWPHEPRMLRVCQALADDPSDNRTAEQWGDCLAMSAKTFHRQF 214 Query: 193 LRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAPSRF 252 R TG+ F WRQQARLL++LE LA G ++ VAL HGY SQSAFAA FK+ FG PS F Sbjct: 215 QRHTGITFGRWRQQARLLMSLECLAEGMPVVQVALQHGYDSQSAFAAAFKRQFGTPPSEF 274 Query: 253 FR 254 +R Sbjct: 275 YR 276 >ref|YP_003052412.1| AraC family transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT51885.1| transcriptional regulator, AraC family [Methylovorus glucosetrophus SIP3-4] Length = 255 Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 126/244 (51%), Positives = 170/244 (69%) Query: 11 NANAPAAALAIDYPHGHVIELHRHAYAQLLYAIEGVLVVETAEGRWVVPPTRGVWLQPEV 70 +A P A+A DYP H I+ H H AQ LYA +GV+++ET+ GRWVVPP+RGVWLQ V Sbjct: 12 HATMPVTAMAEDYPDRHFIQPHTHRRAQFLYATQGVMIIETSTGRWVVPPSRGVWLQAHV 71 Query: 71 DHQVRMRGDVKMRTVFVNMQELPNMPQENCVLDIPPLLRELIVAAVGIGPALVADGRDWH 130 +H VRMRGDV MRT+FVN +P +PQ N V+ + PLLRELI+AA + + R+ Sbjct: 72 EHTVRMRGDVCMRTLFVNPDAVPELPQGNAVVAVSPLLRELILAATSVPLEYETESRNGR 131 Query: 131 LLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHR 190 L+R L+ EL+++PVLP ++P P D L +C + PDD + + + +L ++ RTFHR Sbjct: 132 LMRFLLDELQALPVLPFHIPWPTDARLAALCHHIYDTPDDQTQIAVWSGKLAMSVRTFHR 191 Query: 191 LFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAPS 250 F TG+ F+ WRQ ARLL +LE LA G II VAL+HGYTSQSA+AA+FK+HFG++PS Sbjct: 192 RFRSSTGITFAQWRQLARLLRSLERLAEGASIIQVALEHGYTSQSAYAALFKRHFGVSPS 251 Query: 251 RFFR 254 F+R Sbjct: 252 MFYR 255