BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0196.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004682580.1| ABC transporter permease [Cupriavidus necato... 353 2e-95 ref|YP_842014.1| ABC-type transporter, periplasmic component [Ra... 351 7e-95 ref|YP_002008846.1| hypothetical protein RALTA_B2217 [Cupriavidu... 350 2e-94 ref|YP_299403.1| hypothetical protein Reut_B5213 [Ralstonia eutr... 341 7e-92 ref|YP_587766.1| hypothetical protein Rmet_5638 [Cupriavidus met... 331 6e-89 >ref|YP_004682580.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI81348.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 279 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 165/245 (67%), Positives = 199/245 (81%), Gaps = 1/245 (0%) Query: 26 RTWLLPSSTVLSGSDPWVSVDAAVSNDLFFFESFALKLDGLQVTAPDGTFAKPENASTGK 85 R WLLPS+TVLSGSDPWV+VDAAVSNDLF+FE ++LD LQVTAPDG+ K ENA+TGK Sbjct: 34 RQWLLPSATVLSGSDPWVTVDAAVSNDLFYFEHVPMRLDNLQVTAPDGSAVKAENAATGK 93 Query: 86 LRTSFDVHLTQSGTYKIAVLSNGLFGTYKDTAGQTKRWRGTVETLAKDVPADAKELQVTQ 145 R++FD+HLTQ GTY++AV++NGLF +YK GQ KRWRGT E A++VPA+A++LQVTQ Sbjct: 94 YRSTFDLHLTQPGTYRVAVVNNGLFASYK-VDGQAKRWRGTAENFAREVPANAQDLQVTQ 152 Query: 146 MQGRIETFVTAGKPSKKVLELSGTGLELQAITHPTDLIAGEAASFRMMLDGRPAANLKVT 205 +GRIE+FVTAGKPS K L G GLEL ITHP DL+AG+ ASFR++LDG+PA+NLKV+ Sbjct: 153 AEGRIESFVTAGKPSDKGLRTVGRGLELAPITHPNDLVAGDTASFRLLLDGKPASNLKVS 212 Query: 206 VVPGGTRYRDKLNELTLTTDADGKFSVTWATAGMYWLEATVKDNKPNLKPATDRRANYTA 265 VVPGG RYRD+L E + TTDADGKFSV W AGMYW+EA VKD+K K A RRA Y Sbjct: 213 VVPGGIRYRDQLQEFSATTDADGKFSVKWPAAGMYWMEAEVKDDKTTFKQARSRRAVYAV 272 Query: 266 TLEVL 270 T+EVL Sbjct: 273 TVEVL 277 >ref|YP_842014.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] emb|CAJ97284.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] Length = 279 Score = 351 bits (900), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 163/245 (66%), Positives = 198/245 (80%), Gaps = 1/245 (0%) Query: 26 RTWLLPSSTVLSGSDPWVSVDAAVSNDLFFFESFALKLDGLQVTAPDGTFAKPENASTGK 85 R WLLPS+TVLSGSDPWV+VDAAVSNDLF+FE ++LD LQVTAPDG+ K ENA+TGK Sbjct: 34 RQWLLPSATVLSGSDPWVTVDAAVSNDLFYFEHVPMRLDNLQVTAPDGSAVKAENAATGK 93 Query: 86 LRTSFDVHLTQSGTYKIAVLSNGLFGTYKDTAGQTKRWRGTVETLAKDVPADAKELQVTQ 145 R++FD+HLTQ GTY++AV++NGLF +YK GQ KRWRG+ E AK+VPA+A++LQ TQ Sbjct: 94 YRSTFDLHLTQPGTYRVAVVNNGLFASYK-VDGQAKRWRGSAENFAKEVPANAQDLQATQ 152 Query: 146 MQGRIETFVTAGKPSKKVLELSGTGLELQAITHPTDLIAGEAASFRMMLDGRPAANLKVT 205 +GRIE+F+TAGKPS K L +G GLEL ITHP DL+AG+ ASFRM+LDG+PA+NLKV+ Sbjct: 153 AEGRIESFITAGKPSDKGLRTAGRGLELAPITHPNDLVAGDTASFRMLLDGKPASNLKVS 212 Query: 206 VVPGGTRYRDKLNELTLTTDADGKFSVTWATAGMYWLEATVKDNKPNLKPATDRRANYTA 265 VVPGG RYRD+L E + TTDADGKFSV W GMYW+EA VKD+K K A RRA Y Sbjct: 213 VVPGGIRYRDQLQEFSATTDADGKFSVKWPAPGMYWMEAEVKDDKTTFKQAKSRRAVYAV 272 Query: 266 TLEVL 270 T+EVL Sbjct: 273 TVEVL 277 >ref|YP_002008846.1| hypothetical protein RALTA_B2217 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72794.1| conserved hypothetical protein; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 279 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 165/246 (67%), Positives = 197/246 (80%), Gaps = 1/246 (0%) Query: 25 HRTWLLPSSTVLSGSDPWVSVDAAVSNDLFFFESFALKLDGLQVTAPDGTFAKPENASTG 84 HR WLLPS+TVLSGSDPWV+VDAAVSNDLF+FE ++LD LQVTAPDG+ K ENA+TG Sbjct: 33 HRQWLLPSATVLSGSDPWVTVDAAVSNDLFYFEHVPMRLDNLQVTAPDGSAVKAENAATG 92 Query: 85 KLRTSFDVHLTQSGTYKIAVLSNGLFGTYKDTAGQTKRWRGTVETLAKDVPADAKELQVT 144 K R++FD+HLTQ GTY++AV++NGLF +YK GQ KRWRGT ET A +PA+A++LQVT Sbjct: 93 KYRSTFDLHLTQPGTYRVAVVNNGLFASYK-VDGQPKRWRGTAETFAGAIPANAQDLQVT 151 Query: 145 QMQGRIETFVTAGKPSKKVLELSGTGLELQAITHPTDLIAGEAASFRMMLDGRPAANLKV 204 Q +GRIE+FVTAGKPS K L G GLEL ITHP DL+AG+ ASFR++LDG+PA+NLKV Sbjct: 152 QAEGRIESFVTAGKPSDKGLRTVGRGLELAPITHPNDLVAGDTASFRLLLDGKPASNLKV 211 Query: 205 TVVPGGTRYRDKLNELTLTTDADGKFSVTWATAGMYWLEATVKDNKPNLKPATDRRANYT 264 VVPGG RYRD+L E + TTDA+GKFSV W GMYW+EA VKD+K K A RRA Y Sbjct: 212 AVVPGGIRYRDQLQEFSATTDAEGKFSVKWPAPGMYWMEAEVKDDKTTFKQARSRRAVYA 271 Query: 265 ATLEVL 270 TLEVL Sbjct: 272 VTLEVL 277 >ref|YP_299403.1| hypothetical protein Reut_B5213 [Ralstonia eutropha JMP134] gb|AAZ64559.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 274 Score = 341 bits (874), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 159/246 (64%), Positives = 196/246 (79%), Gaps = 1/246 (0%) Query: 25 HRTWLLPSSTVLSGSDPWVSVDAAVSNDLFFFESFALKLDGLQVTAPDGTFAKPENASTG 84 HR WLLPS+TVLSG+D WV+VDAAVSNDLF+FE L+LD L VT PDG+ K ENASTG Sbjct: 28 HRQWLLPSATVLSGNDTWVTVDAAVSNDLFYFEHVPLRLDNLVVTGPDGSAVKAENASTG 87 Query: 85 KLRTSFDVHLTQSGTYKIAVLSNGLFGTYKDTAGQTKRWRGTVETLAKDVPADAKELQVT 144 + R++FD+HLTQ GTY++AV++ GLF +YK+ GQTKRWRGT + AK+VPA+A+ELQVT Sbjct: 88 RYRSTFDLHLTQPGTYRVAVVNQGLFASYKEN-GQTKRWRGTADAFAKEVPANAQELQVT 146 Query: 145 QMQGRIETFVTAGKPSKKVLELSGTGLELQAITHPTDLIAGEAASFRMMLDGRPAANLKV 204 Q +GR+E+FVT GKPS + L SG GLEL ITHP DL++G ASFR++LDG+PA+NLKV Sbjct: 147 QAEGRVESFVTNGKPSSQGLAASGRGLELAPITHPNDLVSGGTASFRLLLDGKPASNLKV 206 Query: 205 TVVPGGTRYRDKLNELTLTTDADGKFSVTWATAGMYWLEATVKDNKPNLKPATDRRANYT 264 VVPGG RYRD+L E + TTDADGKFSV W GMYW+EA V+D K ++K A RRA Y Sbjct: 207 AVVPGGIRYRDQLQEFSATTDADGKFSVKWPAPGMYWMEAEVRDEKTSVKAAKTRRATYA 266 Query: 265 ATLEVL 270 T+EVL Sbjct: 267 VTVEVL 272 >ref|YP_587766.1| hypothetical protein Rmet_5638 [Cupriavidus metallidurans CH34] gb|ABF12497.1| conserved hypothetical protein; putative exported protein [Cupriavidus metallidurans CH34] gb|EEE72899.1| predicted protein [Populus trichocarpa] Length = 277 Score = 331 bits (849), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 156/245 (63%), Positives = 191/245 (77%), Gaps = 1/245 (0%) Query: 26 RTWLLPSSTVLSGSDPWVSVDAAVSNDLFFFESFALKLDGLQVTAPDGTFAKPENASTGK 85 R WLLPS+TVLSG WV+VDAAVSNDLF+FE ++LD L VT PDG KPENASTGK Sbjct: 32 RQWLLPSTTVLSGGSQWVTVDAAVSNDLFYFEHMPMRLDNLVVTGPDGAAVKPENASTGK 91 Query: 86 LRTSFDVHLTQSGTYKIAVLSNGLFGTYKDTAGQTKRWRGTVETLAKDVPADAKELQVTQ 145 R++FDV L Q GTY+IAV++ GL ++K+ GQTKRWRG + LA +VPA+A+ELQVT+ Sbjct: 92 YRSTFDVPLAQPGTYRIAVVNQGLVASWKEN-GQTKRWRGAADALAANVPANAQELQVTE 150 Query: 146 MQGRIETFVTAGKPSKKVLELSGTGLELQAITHPTDLIAGEAASFRMMLDGRPAANLKVT 205 M R+E++VT+GKPSK+ L +G GLEL ITHP DL AGE ASFR++LDG+PAAN V+ Sbjct: 151 MASRVESYVTSGKPSKQALTTTGRGLELAPITHPNDLAAGETASFRLLLDGKPAANQTVS 210 Query: 206 VVPGGTRYRDKLNELTLTTDADGKFSVTWATAGMYWLEATVKDNKPNLKPATDRRANYTA 265 VVPGG RYRD+LNE TTDADGKFSV W AGMYW+EA ++D K ++KPAT RR Y Sbjct: 211 VVPGGVRYRDRLNEFDTTTDADGKFSVKWPAAGMYWMEAELRDQKTSVKPATARRVTYAV 270 Query: 266 TLEVL 270 T+EVL Sbjct: 271 TVEVL 275