BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0184.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774046.1| methyl-accepting chemotaxis protein [Herbasp...   157   4e-37
ref|XP_002538135.1| conserved hypothetical protein [Ricinus comm...    80   9e-14
ref|YP_855581.1| methyl-accepting chemotaxis protein, putative [...    78   4e-13
ref|YP_004472241.1| methyl-accepting chemotaxis sensory transduc...    74   8e-12
ref|ZP_06459868.1| methyl-accepting chemotaxis protein [Pseudomo...    73   2e-11

>ref|YP_003774046.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62138.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae
           SmR1]
          Length = 301

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 96/119 (80%), Gaps = 2/119 (1%)

Query: 1   MVDDSRMVIDSVIADFRQSALKLSGTVGQLEEENREVDQEVCDILVNLQFQDRISQILDH 60
           +V+ SR VID VIADFRQSA+KLS TV QLE+E+REVD+EVCDILV+LQFQDRISQILDH
Sbjct: 183 IVEQSRAVIDQVIADFRQSAMKLSSTVEQLEDESREVDREVCDILVHLQFQDRISQILDH 242

Query: 61  VQLDMIKL--TGAVESAAPLPPSAAWLADLEKTYTTHEQRQVHAGQQADKSLQSQVDFF 117
           VQ D+ +L    A ++ A LP +  WLADLEKTYTT EQRQVHAGQQ   +  SQVDFF
Sbjct: 243 VQHDIARLRAAAAEDAPAALPSAQQWLADLEKTYTTQEQRQVHAGQQGGAATASQVDFF 301


>ref|XP_002538135.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF24249.1| conserved hypothetical protein [Ricinus communis]
          Length = 158

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 1   MVDDSRMVIDSVIADFRQSALKLSGTVGQLEEENREVDQEVCDILVNLQFQDRISQILDH 60
           MV +S   I  V+  F+ +A +LS +   + +E + + +E+ ++LV LQFQDRISQIL+H
Sbjct: 37  MVANSEEAIAHVLEQFKVAATRLSDSSHAVHQEGKHIGEEIAEVLVTLQFQDRISQILNH 96

Query: 61  VQLDMIKLTGAVE----SAAPLPPSAAWLADLEKTYTTHEQRQVHAG--QQADKSLQSQV 114
           V+ +++KLT  +     SA        WL +L +TYT  EQ  VH G   QAD +  S +
Sbjct: 97  VRSNLVKLTAQLTEQRGSAFTQADIDRWLKELAETYTMPEQHVVHVGGVHQADANA-SDI 155

Query: 115 DFF 117
            FF
Sbjct: 156 TFF 158


>ref|YP_855581.1| methyl-accepting chemotaxis protein, putative [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gb|ABK36211.1| methyl-accepting chemotaxis protein, putative [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 404

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 11/127 (8%)

Query: 2   VDDSRMVIDSVIADFRQSALKLSGTVGQLEEENREVDQEVCDILVNLQFQDRISQILDHV 61
           V D+   I+ V+  FR +   L+ +   L+ E+  + +E+ D++V+LQFQDR+SQIL HV
Sbjct: 278 VSDAEHAIEQVLERFRMATTSLAESAALLQSESTGIHREISDVIVSLQFQDRVSQILGHV 337

Query: 62  QLDMIKLTGAVES-------AAPLPPSA-AWLADLEKTYTTHEQRQVHAGQQ---ADKSL 110
           + +M  L   + S       + P+   A +WLAD+E +Y T EQR +H G++   A  S 
Sbjct: 338 RQNMDSLNDHLISSRTRTHQSGPIQIDAESWLADMELSYATDEQRNIHHGRKTPTATPSS 397

Query: 111 QSQVDFF 117
            + V FF
Sbjct: 398 NADVTFF 404


>ref|YP_004472241.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva
           12-X]
 gb|AEF20147.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva
           12-X]
          Length = 384

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 10/120 (8%)

Query: 8   VIDSVIADFRQSALKLSGTVGQLEEENREVDQEVCDILVNLQFQDRISQILDHVQLDMIK 67
           VI  VI  F+Q+A  +      +  ++  V Q++ ++LV+LQFQDRISQ L H+  D  K
Sbjct: 265 VIAGVIGRFKQNASDIVQHNEIMRTQSESVAQDISEVLVSLQFQDRISQTLGHIAADQDK 324

Query: 68  LTGAVES---------AAPLPPSAAWLADLEKTYTTHEQRQVHAGQQAD-KSLQSQVDFF 117
           L   +++         A P   +  WLA+L +TYTT EQ Q+H G+++  KS  S + FF
Sbjct: 325 LHAHIQNRTTQRQQNLAPPALDADRWLAELAQTYTTPEQHQIHRGEKSSAKSNDSDITFF 384


>ref|ZP_06459868.1| methyl-accepting chemotaxis protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 ref|ZP_06482327.1| methyl-accepting chemotaxis protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gb|EGH02061.1| methyl-accepting chemotaxis protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 405

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 2   VDDSRMVIDSVIADFRQSALKLSGTVGQLEEENREVDQEVCDILVNLQFQDRISQILDHV 61
           V  S   I +V+  F+    +L+ +   L++E+  +  E+ ++LVNLQFQDR+SQIL HV
Sbjct: 284 VAASEQSIQNVLERFQSITGRLAESADLLKQESYGIRDEMTEVLVNLQFQDRVSQILAHV 343

Query: 62  QLDMIKLTGAVESAAPLPPSAA------WLADLEKTYTTHEQRQVHAGQQADKSLQSQVD 115
           + ++  L   +  A+  P  A       WLA +E TY T EQR+ H G+ A +    ++ 
Sbjct: 344 RDNIDSLHAHLLQASQSPDEAVAIDARQWLARMESTYATDEQRRTHRGESAAQQSSQEIT 403

Query: 116 FF 117
           FF
Sbjct: 404 FF 405