BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0183.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774047.1| two-component system sensor histidine kinase...   198   2e-49
ref|YP_004353525.1| CheY family response regulator [Pseudomonas ...   179   2e-43
ref|YP_004393827.1| alkaline phosphatase synthesis transcription...   178   3e-43
ref|XP_002538134.1| two-component system sensor histidine kinase...   176   1e-42
ref|YP_855580.1| chemotaxis protein CheY [Aeromonas hydrophila s...   175   2e-42

>ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62139.1| two-component system sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 104/120 (86%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63
           K ILIVDDSFSLRQTIS ALK+AGY V EA DG+ AL  LDGRK+NL+ISD+NMP+LDGL
Sbjct: 3   KNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGL 62

Query: 64  SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLVTP 123
           SFVRE KQ P YKFTPV+MLTTES + RKQEGKA G+RAWVHKPF PPVLLDAVAKL+ P
Sbjct: 63  SFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLILP 122


>ref|YP_004353525.1| CheY family response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gb|AEA68521.1| putative response regulator, CheY family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 122

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 101/120 (84%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63
           KTILIVDDS S+RQ +SI LK AGY+V+E +DGRDAL KLDGRK +LI+SDVNMPN+DGL
Sbjct: 3   KTILIVDDSASIRQVVSITLKGAGYEVIEGVDGRDALTKLDGRKIHLIVSDVNMPNMDGL 62

Query: 64  SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLVTP 123
           SF++ AKQ P YKFTPV+MLTTE+G+  KQ+G+A+G +AW+ KPF P  +L AV+KL+ P
Sbjct: 63  SFIKAAKQLPAYKFTPVIMLTTETGEAMKQQGQAVGAKAWMVKPFQPAQMLGAVSKLIMP 122


>ref|YP_004393827.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aeromonas veronii B565]
 gb|AEB51210.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aeromonas veronii B565]
          Length = 122

 Score =  178 bits (451), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 102/120 (85%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63
           KTILIVDDS ++RQ + + LK AGY+V+EA DG+DALNKLDG+K NLIISDVNMPN+DG+
Sbjct: 3   KTILIVDDSATIRQVVGMTLKGAGYEVMEASDGKDALNKLDGKKINLIISDVNMPNMDGI 62

Query: 64  SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLVTP 123
           +FV+EAK+  NYKFTPV+MLTTES D++KQEG+A G +AWV KPF P  +L AVAKL+ P
Sbjct: 63  TFVKEAKKLANYKFTPVIMLTTESQDSKKQEGQAAGAKAWVVKPFQPEQMLAAVAKLIMP 122


>ref|XP_002538134.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gb|EEF24248.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 122

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 103/120 (85%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63
           KTIL+VDDS SLRQ +SIALK AGY+V+EA DG+DAL+KL+G+K +LIISDVNMPN+DG+
Sbjct: 3   KTILVVDDSASLRQVVSIALKGAGYEVIEANDGKDALSKLNGQKIHLIISDVNMPNMDGI 62

Query: 64  SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLVTP 123
           SFV+ AKQ P YKFTPV+MLTTE+G+++K EG+A G +AWV KPF P  +L AV+KL+ P
Sbjct: 63  SFVKAAKQLPAYKFTPVIMLTTEAGESKKAEGQAAGAKAWVVKPFQPAQMLTAVSKLILP 122


>ref|YP_855580.1| chemotaxis protein CheY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gb|ABK39884.1| chemotaxis protein CheY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 122

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 101/120 (84%)

Query: 4   KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63
           KT+LIVDDS ++RQ + + LK AGY+V+EA DG+DAL KLDG+K NLIISDVNMPN+DG+
Sbjct: 3   KTVLIVDDSATIRQVVGMTLKGAGYEVMEACDGKDALKKLDGKKINLIISDVNMPNMDGI 62

Query: 64  SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLVTP 123
           SFV+EAK+  +YKFTPV+MLTTES D++KQEG+A G +AWV KPF P  +L AVAKL+ P
Sbjct: 63  SFVKEAKKLASYKFTPVIMLTTESQDSKKQEGQAAGAKAWVVKPFQPDQMLAAVAKLIMP 122