BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0180.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775105.1| glycine/D-amino acid oxidase [Herbaspirillum... 276 9e-73 ref|ZP_08274999.1| D-amino acid dehydrogenase small subunit [Oxa... 275 3e-72 ref|YP_296752.1| D-amino acid dehydrogenase small subunit [Ralst... 274 4e-72 ref|YP_004359620.1| D-amino acid dehydrogenase small subunit [Bu... 268 2e-70 ref|YP_004684673.1| D-amino acid dehydrogenase small subunit [Cu... 263 6e-69 >ref|YP_003775105.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ63197.1| glycine/D-amino acid oxidase (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 276 bits (706), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 128/160 (80%), Positives = 144/160 (90%) Query: 1 MFEEHAPLAIRPDGTLQQLRWMWQMLRNCSADRYAVNKERMVRLAEYSRDCFRELRAATG 60 MF+EHAPLAIR DG+ QLRWMWQMLRNC+A+RYAVNKERMVRLAEYSRDC R+LRA G Sbjct: 68 MFQEHAPLAIRLDGSFNQLRWMWQMLRNCNAERYAVNKERMVRLAEYSRDCLRDLRADVG 127 Query: 61 IDYEGRQQGTLQLFRTQEQFDGAAKDIAVLRQSGVPFELLSREQLAGAEPALAKVSHKLT 120 I YEGRQQGTLQLFR+QEQ +GAAKDIAVL+++GVPFELL+ +QL AEPALAKV KLT Sbjct: 128 IPYEGRQQGTLQLFRSQEQLEGAAKDIAVLKEAGVPFELLTPDQLGNAEPALAKVRDKLT 187 Query: 121 GGLRLPNDETGDCQLFTTKLAKMAEELGVQFRYDVDIQAL 160 GGLRLPNDETGDCQLFTT+LA MAE++GV+FRY VDI AL Sbjct: 188 GGLRLPNDETGDCQLFTTRLATMAEQIGVKFRYGVDIDAL 227 >ref|ZP_08274999.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31521.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae bacterium IMCC9480] Length = 428 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 128/160 (80%), Positives = 143/160 (89%) Query: 1 MFEEHAPLAIRPDGTLQQLRWMWQMLRNCSADRYAVNKERMVRLAEYSRDCFRELRAATG 60 M +EHAPLAIRPDG+L QL+WMWQMLRNCSA RYAVNKERMVRL+EYSRDC R+LRAATG Sbjct: 68 MVQEHAPLAIRPDGSLFQLQWMWQMLRNCSASRYAVNKERMVRLSEYSRDCLRDLRAATG 127 Query: 61 IDYEGRQQGTLQLFRTQEQFDGAAKDIAVLRQSGVPFELLSREQLAGAEPALAKVSHKLT 120 IDYEGRQQGTLQLFRT++QFD AAKD+ VL Q+GVP+ELL+ + LA AEPALA VSHKL Sbjct: 128 IDYEGRQQGTLQLFRTRQQFDDAAKDMRVLEQAGVPYELLTSDALAKAEPALAAVSHKLV 187 Query: 121 GGLRLPNDETGDCQLFTTKLAKMAEELGVQFRYDVDIQAL 160 GGLRLPNDETGDCQLFTT+LA MA++LGVQF YD I AL Sbjct: 188 GGLRLPNDETGDCQLFTTRLAAMAKDLGVQFEYDTPIDAL 227 >ref|YP_296752.1| D-amino acid dehydrogenase small subunit [Ralstonia eutropha JMP134] gb|AAZ61908.1| D-amino acid dehydrogenase small subunit [Ralstonia eutropha JMP134] Length = 434 Score = 274 bits (700), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 128/169 (75%), Positives = 146/169 (86%) Query: 1 MFEEHAPLAIRPDGTLQQLRWMWQMLRNCSADRYAVNKERMVRLAEYSRDCFRELRAATG 60 MF+EHAPL+IRPDGTL QL+WMWQML+NCSA+RYAVNKERMVRLAEYSRDC R LRA TG Sbjct: 68 MFQEHAPLSIRPDGTLFQLQWMWQMLQNCSAERYAVNKERMVRLAEYSRDCIRALRADTG 127 Query: 61 IDYEGRQQGTLQLFRTQEQFDGAAKDIAVLRQSGVPFELLSREQLAGAEPALAKVSHKLT 120 I YEGRQ GTLQ+FRTQ+Q DGAAKDIAVL ++GVP++LLSRE+LA +EPALA VSHKLT Sbjct: 128 IAYEGRQHGTLQVFRTQDQLDGAAKDIAVLEEAGVPYQLLSREELAASEPALAAVSHKLT 187 Query: 121 GGLRLPNDETGDCQLFTTKLAKMAEELGVQFRYDVDIQALXACSSATTS 169 GGLRLPNDETGDCQLFT +LA MAE LGV+F+Y+ I +L A T Sbjct: 188 GGLRLPNDETGDCQLFTRQLAAMAEALGVKFQYNRSINSLMTQGDAVTG 236 >ref|YP_004359620.1| D-amino acid dehydrogenase small subunit [Burkholderia gladioli BSR3] gb|AEA59664.1| D-amino acid dehydrogenase small subunit [Burkholderia gladioli BSR3] Length = 428 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/160 (80%), Positives = 139/160 (86%) Query: 1 MFEEHAPLAIRPDGTLQQLRWMWQMLRNCSADRYAVNKERMVRLAEYSRDCFRELRAATG 60 MFE+HAPLAIR DGT QL+WMWQMLRNC+A+RYAVNK RMVRLAEYSRDCF+ LRA TG Sbjct: 68 MFEKHAPLAIRLDGTRFQLQWMWQMLRNCTAERYAVNKGRMVRLAEYSRDCFQALRADTG 127 Query: 61 IDYEGRQQGTLQLFRTQEQFDGAAKDIAVLRQSGVPFELLSREQLAGAEPALAKVSHKLT 120 I YEGR GTLQLFRTQ QFDGAAKDIAVLR + VPFELL+ +QL AEPALA VSHKLT Sbjct: 128 IAYEGRTGGTLQLFRTQAQFDGAAKDIAVLRDANVPFELLTADQLKNAEPALAAVSHKLT 187 Query: 121 GGLRLPNDETGDCQLFTTKLAKMAEELGVQFRYDVDIQAL 160 GGLRLP DETGDCQLFTT+LA MAEELGVQFRY+ I AL Sbjct: 188 GGLRLPGDETGDCQLFTTRLAAMAEELGVQFRYNTPIDAL 227 >ref|YP_004684673.1| D-amino acid dehydrogenase small subunit [Cupriavidus necator N-1] gb|AEI76192.1| D-amino acid dehydrogenase small subunit [Cupriavidus necator N-1] Length = 434 Score = 263 bits (673), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 125/169 (73%), Positives = 140/169 (82%) Query: 1 MFEEHAPLAIRPDGTLQQLRWMWQMLRNCSADRYAVNKERMVRLAEYSRDCFRELRAATG 60 MF+EHAPL+IRPDGTL QL+WMWQML NCSA RYAVNKERMVRLAEYSRDC R LRA TG Sbjct: 68 MFQEHAPLSIRPDGTLFQLQWMWQMLLNCSAGRYAVNKERMVRLAEYSRDCIRALRAETG 127 Query: 61 IDYEGRQQGTLQLFRTQEQFDGAAKDIAVLRQSGVPFELLSREQLAGAEPALAKVSHKLT 120 I YEGRQQGTLQ+FRT+EQ GAAKDIAVL ++GVP++LLSRE+LA +EPALA V HKL Sbjct: 128 IAYEGRQQGTLQVFRTEEQLQGAAKDIAVLEEAGVPYQLLSREELAASEPALAAVRHKLA 187 Query: 121 GGLRLPNDETGDCQLFTTKLAKMAEELGVQFRYDVDIQALXACSSATTS 169 GGLRLPNDETGDC LFT +LA MAE LGV+F Y+ I +L A T Sbjct: 188 GGLRLPNDETGDCALFTQRLAGMAEMLGVKFLYNRSIDSLMTQGDAVTG 236