BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0178.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754870.1| D-amino acid dehydrogenase small subunit [Co... 306 2e-81 ref|YP_002910785.1| D-amino acid dehydrogenase small subunit [Bu... 303 2e-80 ref|YP_004359620.1| D-amino acid dehydrogenase small subunit [Bu... 302 3e-80 ref|YP_620469.1| D-amino acid dehydrogenase small subunit [Burkh... 298 4e-79 ref|YP_001764322.1| D-amino acid dehydrogenase small subunit [Bu... 298 4e-79 >ref|YP_004754870.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] gb|AEK64047.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] Length = 428 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 144/174 (82%), Positives = 159/174 (91%) Query: 62 ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121 E ++ D YVVALG+YS FL +VDIPVYPLKGYSITVP+VD+ AAPVST+LDETYKIA+ Sbjct: 242 EHLQADRYVVALGAYSTGFLGSLVDIPVYPLKGYSITVPIVDAEAAPVSTVLDETYKIAI 301 Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181 TRFD+RIRVGGMAE+VGFNK L PKRRATLE+VVNDLFPGAGNTA ASFWTGLRPMTPDG Sbjct: 302 TRFDDRIRVGGMAEIVGFNKTLKPKRRATLEMVVNDLFPGAGNTAAASFWTGLRPMTPDG 361 Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARY 235 TPIVGAT + NLFLNTGHGTLGWTMSCGS QLLADLISGKRPAIA+DDL++ RY Sbjct: 362 TPIVGATHIRNLFLNTGHGTLGWTMSCGSAQLLADLISGKRPAIASDDLAVGRY 415 >ref|YP_002910785.1| D-amino acid dehydrogenase small subunit [Burkholderia glumae BGR1] gb|ACR28081.1| D-amino acid dehydrogenase small subunit [Burkholderia glumae BGR1] Length = 428 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 139/177 (78%), Positives = 159/177 (89%) Query: 62 ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121 ELVRGDAYVVALGSYS L +V IPVYPLKGYSIT P+VD+ AAPVST+LDETYKIA+ Sbjct: 242 ELVRGDAYVVALGSYSTRLLSNLVKIPVYPLKGYSITAPIVDASAAPVSTVLDETYKIAI 301 Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181 TRFD+RIRVGGMAE+ GF+K LNP RR TLE+ VNDLFPG G+T++A+FWTGLRPMTPDG Sbjct: 302 TRFDSRIRVGGMAEIAGFDKRLNPARRETLEMCVNDLFPGGGDTSKATFWTGLRPMTPDG 361 Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARYLGQ 238 TPIVG TP+ NL+LNTGHGTLGWTMSCGSGQLLADL+SG++PAI ADDLS+ RYLG+ Sbjct: 362 TPIVGRTPIPNLYLNTGHGTLGWTMSCGSGQLLADLMSGRKPAIQADDLSVHRYLGE 418 >ref|YP_004359620.1| D-amino acid dehydrogenase small subunit [Burkholderia gladioli BSR3] gb|AEA59664.1| D-amino acid dehydrogenase small subunit [Burkholderia gladioli BSR3] Length = 428 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 142/177 (80%), Positives = 158/177 (89%) Query: 62 ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121 ELVRGDAYVVALGSYS FL IV IPVYPLKGYSIT P+VD+ AAPVST+LDETYKIA+ Sbjct: 242 ELVRGDAYVVALGSYSTRFLSNIVKIPVYPLKGYSITAPIVDTAAAPVSTVLDETYKIAI 301 Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181 TRFD+RIRVGGMAE+ GF+K LN RR TLE+ VNDLFPG G+T++ASFWTGLRPMTPDG Sbjct: 302 TRFDSRIRVGGMAEIAGFDKRLNQARRETLEMCVNDLFPGGGDTSKASFWTGLRPMTPDG 361 Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARYLGQ 238 TPIVG TP+ NLFLNTGHGTLGWTMSCGSGQLLADL+SGK+PAI ADDLS+ RYL + Sbjct: 362 TPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADLMSGKKPAIQADDLSVHRYLDE 418 >ref|YP_620469.1| D-amino acid dehydrogenase small subunit [Burkholderia cenocepacia AU 1054] ref|YP_834710.1| D-amino acid dehydrogenase small subunit [Burkholderia cenocepacia HI2424] sp|Q1BY09.1|DADA_BURCA RecName: Full=D-amino acid dehydrogenase small subunit sp|A0K5P0.1|DADA_BURCH RecName: Full=D-amino acid dehydrogenase small subunit gb|ABF75496.1| D-amino-acid dehydrogenase [Burkholderia cenocepacia AU 1054] gb|ABK07817.1| D-amino-acid dehydrogenase [Burkholderia cenocepacia HI2424] Length = 428 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 138/175 (78%), Positives = 156/175 (89%) Query: 62 ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121 E VR DAYVVALGSYS NF+ ++ IPVYPLKGYSIT P+VD+ AAPVST+LDETYKIA+ Sbjct: 242 ETVRADAYVVALGSYSTNFISNLMKIPVYPLKGYSITAPIVDAAAAPVSTVLDETYKIAI 301 Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181 TRFD RIRVGGMAE+VGF+K L RR TLE+ VNDLFPG G+T++A+FWTGLRPMTPDG Sbjct: 302 TRFDQRIRVGGMAEIVGFDKTLRAARRETLEMCVNDLFPGGGDTSKATFWTGLRPMTPDG 361 Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARYL 236 TPIVG TP++NLFLNTGHGTLGWTMSCGSGQLLADLISGK+PAI ADDLS+ RYL Sbjct: 362 TPIVGRTPVSNLFLNTGHGTLGWTMSCGSGQLLADLISGKKPAIQADDLSVHRYL 416 >ref|YP_001764322.1| D-amino acid dehydrogenase small subunit [Burkholderia cenocepacia MC0-3] sp|B1JXT8.1|DADA_BURCC RecName: Full=D-amino acid dehydrogenase small subunit gb|ACA90200.1| D-amino-acid dehydrogenase [Burkholderia cenocepacia MC0-3] Length = 428 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 138/175 (78%), Positives = 156/175 (89%) Query: 62 ELVRGDAYVVALGSYSANFLRRIVDIPVYPLKGYSITVPVVDSRAAPVSTILDETYKIAV 121 E VR DAYVVALGSYS NF+ ++ IPVYPLKGYSIT P+VD+ AAPVST+LDETYKIA+ Sbjct: 242 ETVRADAYVVALGSYSTNFISNLMKIPVYPLKGYSITAPIVDAAAAPVSTVLDETYKIAI 301 Query: 122 TRFDNRIRVGGMAEVVGFNKELNPKRRATLELVVNDLFPGAGNTAQASFWTGLRPMTPDG 181 TRFD RIRVGGMAE+VGF+K L RR TLE+ VNDLFPG G+T++A+FWTGLRPMTPDG Sbjct: 302 TRFDQRIRVGGMAEIVGFDKTLRAARRETLEMCVNDLFPGGGDTSKATFWTGLRPMTPDG 361 Query: 182 TPIVGATPLNNLFLNTGHGTLGWTMSCGSGQLLADLISGKRPAIAADDLSMARYL 236 TPIVG TP++NLFLNTGHGTLGWTMSCGSGQLLADLISGK+PAI ADDLS+ RYL Sbjct: 362 TPIVGRTPVSNLFLNTGHGTLGWTMSCGSGQLLADLISGKKPAIQADDLSVHRYL 416