BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0177.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum ... 235 6e-60 ref|YP_931912.1| putative chemotaxis protein histidine kinase [A... 211 1e-52 ref|YP_003847743.1| CheA signal transduction histidine kinase [G... 208 7e-52 ref|YP_284368.1| CheW-like protein:ATP-binding region, ATPase-li... 206 4e-51 gb|EGW60088.1| CheA signal transduction histidine kinase [Dechlo... 205 5e-51 >ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ62141.1| chemotaxis histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 135/262 (51%), Positives = 167/262 (63%), Gaps = 20/262 (7%) Query: 24 ANAGAVANPNWHLSLRFSPDVLRDGLDPLSFLRYLLTMGSMVYAHVIDLAIPAADDMDAE 83 A+ A P WHLSL+ + +VLRDGLDPLSFL YL ++G +V ++ AIP A MDAE Sbjct: 157 ADQAATRVPYWHLSLQLNENVLRDGLDPLSFLHYLRSLGRIVALVTVESAIPEAAAMDAE 216 Query: 84 LCYLGFEIGFASTAGREEIDSVFEFVREGSDIVILAPHSQLTTYGHWLQGLPERAEVALH 143 CYLG E+ AS + + +++VFEFVR+ S I IL P + L+ Y L L Sbjct: 217 SCYLGMEVCLASDSTLQTLENVFEFVRDDSRIDILPPRAPLSAYAERLARLAP------- 269 Query: 144 LLQSGALTAAEWRQLQL-DVAEADDLVTTEKRPGVVPSQIRAAIPAL-------RQRGGE 195 Q A AA WR L L D + L P + AA+ + R R + Sbjct: 270 --QDAARLAAAWRGLALFDQTQWQSLEAASATPS---DALAAAVEPMAAEGVLQRPRALD 324 Query: 196 EKKSHEQKFIKIEVSKLDQLIDLVGELVIAGAGASLVAKRKKDQRFEEATQVISGLVEQI 255 E+++ EQKFIKIEVSKLDQLIDLVGELVIAGA A L+A+R+KD +FEEATQ I L+EQI Sbjct: 325 ERRAQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDTLMEQI 384 Query: 256 RDAALTLRMVQINEVFQRFPRV 277 RDAALTLRMVQINEVFQRFPR+ Sbjct: 385 RDAALTLRMVQINEVFQRFPRI 406 >ref|YP_931912.1| putative chemotaxis protein histidine kinase [Azoarcus sp. BH72] emb|CAL93025.1| putative chemotaxis protein histidine kinase [Azoarcus sp. BH72] Length = 731 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/276 (44%), Positives = 163/276 (59%), Gaps = 34/276 (12%) Query: 24 ANAGAVANPNWHLSLRFSPDVLRDGLDPLSFLRYLLTMGSMVYAHVIDLAIPAADDMDAE 83 + G V WH+SLRF PDVL++G+DPLSFLRYL T+G++V + A+P AD+MDAE Sbjct: 150 SGGGVVDTDCWHISLRFGPDVLKNGMDPLSFLRYLATLGTIVRIETLADAMPPADEMDAE 209 Query: 84 LCYLGFEIGFASTAGREEIDSVFEFVREGSDIVILAPHSQLTTYGHWLQGLPE-RAEVAL 142 CYLGFEI FAS+A + I+ VF+FVR+ + IL PHS+L Y ++ LPE + Sbjct: 210 NCYLGFEISFASSADKAAIERVFDFVRDDCTLHILPPHSRLHDYLEMIKALPEDNMRLGE 269 Query: 143 HLLQSGALTAAEWRQLQLDVAEADDLVTTEKRPG---------------------VVPSQ 181 L++ GALT AE DD + T+ P V P Sbjct: 270 ILVRVGALTQAEL----------DDGLRTQHPPHEDGAAEEITAPIGEILVEQHVVQPEL 319 Query: 182 IRAAIPALRQRGGEEKKSHEQKFIKIEVSKLDQLIDLVGELVIAGAGASLVAKRKKDQRF 241 + AA+ ++Q+ +KK+ E + I+I+ KLD+LIDLVGELVIAGA +L+A + Sbjct: 320 VEAAV--VKQKQVSDKKAAEARLIRIQADKLDKLIDLVGELVIAGASVNLLAGKSGLSEL 377 Query: 242 EEATQVISGLVEQIRDAALTLRMVQINEVFQRFPRV 277 EAT + LVE IRDAAL LRMVQI E F RF RV Sbjct: 378 VEATSLTGRLVESIRDAALQLRMVQIGETFNRFNRV 413 >ref|YP_003847743.1| CheA signal transduction histidine kinase [Gallionella capsiferriformans ES-2] gb|ADL55979.1| CheA signal transduction histidine kinase [Gallionella capsiferriformans ES-2] Length = 718 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 119/267 (44%), Positives = 166/267 (62%), Gaps = 19/267 (7%) Query: 24 ANAGAVANPNWHLSLRFSPDVLRDGLDPLSFLRYLLTMGSMVYAHVIDLAIPAADDMDAE 83 + G + NWH+SLRF PDVLR G+DP SFLRYL+ +G +V+ + A+P A++MDAE Sbjct: 145 SGGGQMETDNWHISLRFGPDVLRKGMDPASFLRYLMELGEIVHLTTLPDAMPNAEEMDAE 204 Query: 84 LCYLGFEIGFASTAGREEIDSVFEFVREGSDIVILAPHSQLTTYGHWLQGLPERA-EVAL 142 CYLGFEI + S A + +I++VF FV + + I PHS+L + ++ LPE + Sbjct: 205 SCYLGFEISYKSEAEKSQIENVFSFVSDDCVVHIWPPHSKLADFISTIETLPEDTMRLGE 264 Query: 143 HLLQSGALTAAEWRQLQLDVA------EADDLVTTEK------RPGVVPSQIRAAIPALR 190 L+ GALT Q +LD+A DD K GVV +++ A A++ Sbjct: 265 ILILCGALT-----QNELDIALNTQSDRVDDRSVQPKIGDLLVNQGVVTAEVVEA-AAVK 318 Query: 191 QRGGEEKKSHEQKFIKIEVSKLDQLIDLVGELVIAGAGASLVAKRKKDQRFEEATQVISG 250 Q +KK+ E + I+++ +KLDQLIDLVGE+VIA AGA++ A++ + E+T VIS Sbjct: 319 QGKVADKKTIESQLIRVQAAKLDQLIDLVGEMVIASAGANMQARKSGETALVESTSVISM 378 Query: 251 LVEQIRDAALTLRMVQINEVFQRFPRV 277 LVEQIRD+AL LRMVQI E F RF RV Sbjct: 379 LVEQIRDSALQLRMVQIGETFTRFQRV 405 >ref|YP_284368.1| CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt [Dechloromonas aromatica RCB] gb|AAZ45898.1| CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt [Dechloromonas aromatica RCB] Length = 741 Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/290 (42%), Positives = 176/290 (60%), Gaps = 19/290 (6%) Query: 2 AAPVAAAVSNAADAPIAVAEDGANAGAVANPNWHLSLRFSPDVLRDGLDPLSFLRYLLTM 61 A P A++++ DA + V G G V +WH+S+RF +VLR G+DPLSF+RYL T+ Sbjct: 135 ATPEASSLA-VHDATVEVESSGG--GIVLTDSWHISVRFGENVLRGGMDPLSFIRYLSTL 191 Query: 62 GSMVYAHVIDLAIPAADDMDAELCYLGFEIGFASTAGREEIDSVFEFVREGSDIVILAPH 121 G ++ I A+PAA +MD E CY+GFEI + + + +I+ VF+FVR+ D+ IL P+ Sbjct: 192 GEILGIETISEAMPAAAEMDPESCYIGFEIQLQTRSSKADIERVFDFVRDDCDLRILPPN 251 Query: 122 SQLTTYGHWLQGLPERA-EVALHLLQSGALTAAEWRQLQLDVA-EADDLVTTEKRPG--- 176 S+L+ Y +Q LPE + L++ GALT E Q L A++L PG Sbjct: 252 SKLSEYIKHIQELPEDTMRLGEILVRCGALTQGELDQGLLSQKFSAENLSPDNASPGHQL 311 Query: 177 ---------VVPSQIRAAIPALRQRGGEEKKSHEQKFIKIEVSKLDQLIDLVGELVIAGA 227 V+ + AA+ ++Q +KK+ E + ++++ KLDQLIDLVGELVIAGA Sbjct: 312 GEILVDHRVVLKEIVDAAV--VKQAQINDKKAKEARLVRVQADKLDQLIDLVGELVIAGA 369 Query: 228 GASLVAKRKKDQRFEEATQVISGLVEQIRDAALTLRMVQINEVFQRFPRV 277 A+L+A++ K EAT V+S LVE IRD+AL LRMVQI + F RF RV Sbjct: 370 SANLLAQKSKQGDLVEATSVLSRLVENIRDSALQLRMVQIGDTFTRFNRV 419 >gb|EGW60088.1| CheA signal transduction histidine kinase [Dechlorosoma suillum PS] Length = 744 Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/291 (43%), Positives = 172/291 (59%), Gaps = 20/291 (6%) Query: 3 APVAAAVSNAADAPIAVAED--GANAGAVANPNWHLSLRFSPDVLRDGLDPLSFLRYLLT 60 AP A+ N P+ +D + G V WH+SLRF VLR+G+DP+SFLRYL T Sbjct: 134 APAASVQPNRP--PVEKVDDVQASGGGLVETDFWHISLRFGAGVLRNGMDPISFLRYLST 191 Query: 61 MGSMVYAHVIDLAIPAADDMDAELCYLGFEIGFASTAGREEIDSVFEFVREGSDIVILAP 120 +G +V+ I A+P+A++MD E CYLGFEI F S A + I++VF+FVR+ + IL P Sbjct: 192 LGQIVHIETIPDAMPSAEEMDPEACYLGFEIKFKSDADKAAIEAVFDFVRDECTLHILPP 251 Query: 121 HSQLTTYGHWLQGLPERA-EVALHLLQSGALTAAEWRQ-LQLDVAEADDLVTTEKRPG-- 176 +S+L Y LQ LPE + L++ GALT AE L+ A + E P Sbjct: 252 NSKLADYIALLQALPENTMRLGEILVKIGALTQAELDDGLKQQHAVPPEEGGEEASPPLP 311 Query: 177 ----------VVPSQIRAAIPALRQRGGEEKKSHEQKFIKIEVSKLDQLIDLVGELVIAG 226 V P + AA+ ++Q+ EKK+ E + I+I+ KLD+LIDLVGELVIAG Sbjct: 312 LGEILIEQQVVQPELVEAAV--IKQKQVSEKKAAEARLIRIQADKLDRLIDLVGELVIAG 369 Query: 227 AGASLVAKRKKDQRFEEATQVISGLVEQIRDAALTLRMVQINEVFQRFPRV 277 A +L+A R EAT +++ LVEQIRD+AL LRMVQI E F RF RV Sbjct: 370 ASTNLLASRAGLSDLNEATSLLNRLVEQIRDSALQLRMVQIGETFNRFQRV 420