BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0173.p         (114 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774050.1| methyl-accepting chemotaxis transducer trans...   125   2e-27
ref|YP_003809990.1| Methyl-accepting chemotaxis protein [gamma p...    89   2e-16
ref|YP_002954097.1| methyl-accepting chemotaxis protein [Desulfo...    87   7e-16
gb|ACY24810.1| methyl-accepting chemotaxis sensory transducer [u...    85   3e-15
gb|ACY24879.1| methyl-accepting chemotaxis sensory transducer [u...    85   3e-15

>ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ62142.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 595

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 86/116 (74%), Gaps = 7/116 (6%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           VQEI+AAS EQS GLEQIN+AVHQMAQTTQ+TASASEELS+TSEEMSAQA+ LQ+L+ FF
Sbjct: 485 VQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFF 544

Query: 61  QVGEEKRPQSKKATNAGKMINESPAISTKFVKPARISMLDGGDD--PIDESSFKRF 114
           QVGE +    K A  A K +   P+   K     R+SMLD  +D   +DESSFKRF
Sbjct: 545 QVGEPR----KNAPRASKAVPLPPS-GGKSDSVRRLSMLDAPEDERGVDESSFKRF 595


>ref|YP_003809990.1| Methyl-accepting chemotaxis protein [gamma proteobacterium HdN1]
 emb|CBL44331.1| Methyl-accepting chemotaxis protein [gamma proteobacterium HdN1]
          Length = 543

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 59/64 (92%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           VQEISAAS EQ++GL QI+ AV Q++QTTQ+TASASE+LSST+EEMSAQA++LQ+L+ +F
Sbjct: 442 VQEISAASSEQTSGLTQISSAVAQLSQTTQMTASASEQLSSTAEEMSAQALELQQLVSYF 501

Query: 61  QVGE 64
           Q+G+
Sbjct: 502 QLGQ 505


>ref|YP_002954097.1| methyl-accepting chemotaxis protein [Desulfovibrio magneticus RS-1]
 dbj|BAH76211.1| methyl-accepting chemotaxis protein [Desulfovibrio magneticus RS-1]
          Length = 686

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 72/117 (61%), Gaps = 10/117 (8%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           VQEI+A+S EQ++G  QIN A+ Q+ Q  Q  ASASEE++STSEE+SAQA QLQ  I FF
Sbjct: 577 VQEIAASSNEQNSGASQINKAIQQLDQVVQQNASASEEMASTSEELSAQAEQLQGSISFF 636

Query: 61  QV---GEEKRPQSKKATNAGKMINESPAISTKFVKPARISMLDGGDDPIDESSFKRF 114
           QV   G  KR    KA  AG+M   +P+ + K  K   I M D  DD      F+RF
Sbjct: 637 QVAGSGATKRHMPVKALPAGRMARPAPSKAVKS-KGVAIEMHDADDD------FERF 686


>gb|ACY24810.1| methyl-accepting chemotaxis sensory transducer [uncultured
           organism]
          Length = 629

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 55/64 (85%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           VQEISAAS EQ+ GLEQIN AV QMAQTTQ+ AS++EEL++T+EEMS QA+QLQE++ FF
Sbjct: 561 VQEISAASSEQATGLEQINVAVGQMAQTTQVNASSAEELNATAEEMSNQAIQLQEMMEFF 620

Query: 61  QVGE 64
            + E
Sbjct: 621 VIDE 624


>gb|ACY24879.1| methyl-accepting chemotaxis sensory transducer [uncultured
           organism]
          Length = 620

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 55/64 (85%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           VQEISAAS EQ+ GLEQIN AV QMAQTTQ+ AS++EEL++T+EEMS QA+QLQE++ FF
Sbjct: 552 VQEISAASSEQATGLEQINVAVGQMAQTTQVNASSAEELNATAEEMSNQAIQLQEMMEFF 611

Query: 61  QVGE 64
            + E
Sbjct: 612 VIDE 615