BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0172.p (533 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001981682.1| methyl-accepting chemotaxis protein [Cellvib... 298 2e-78 ref|YP_003809990.1| Methyl-accepting chemotaxis protein [gamma p... 295 1e-77 ref|YP_003774050.1| methyl-accepting chemotaxis transducer trans... 295 2e-77 ref|YP_002874597.1| putative methyl-accepting chemotaxis protein... 287 3e-75 ref|YP_003812140.1| Probable methyl-accepting chemotaxis [gamma ... 285 1e-74 >ref|YP_001981682.1| methyl-accepting chemotaxis protein [Cellvibrio japonicus Ueda107] gb|ACE85616.1| methyl-accepting chemotaxis protein [Cellvibrio japonicus Ueda107] Length = 571 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 199/501 (39%), Positives = 316/501 (63%), Gaps = 17/501 (3%) Query: 1 MKLSSKLAVCFAFGALLTAAVGADGVLNLFRVNAMLQEVYTANLLTIVNLNNANK---IA 57 ++L+ KL F AL+TA VG G+ N+ V +++ +YT NL+ + NL+N+ + Sbjct: 28 LRLAQKLLTTFVTLALITAGVGFYGLQNIVHVGGLMRAMYTDNLVAVDNLSNSYGRFLVY 87 Query: 58 VDIATSMQNMEKSEERVERQRIADVLKYRLKDLGQAYDGYKSTTVTSELERTLQQQADVL 117 T M E + R ++R+ + + A + ++ + +++E E+ L + + Sbjct: 88 TRAVTRMPTQEPDDIRATQERMVN----HWANSEAAMEKFRQSPISAE-EQALLDKLEAN 142 Query: 118 LDAYVKRVNQRREQLLRDEDAKGNP---DSLRIESDSLRSQLAALVDENVHQAKA--NKS 172 Y++ V Q L+ + A+ N + LR+ S + L+D N QA A + Sbjct: 143 KKVYLQYVEQLGALLIGRKIAEANELSVNELRLTSYEIEQAYTELIDNNNKQAAAADQEG 202 Query: 173 RAAILERKTLGEVVAVTALALLIAVALTLYMRRIFARQIGGDPREVMRILRKIADGDLRV 232 +A + E + +++V +++L+A+ L + RI RQ+GG+P ++R+IA+GDL V Sbjct: 203 QATVAEMRV--VMISVIVVSMLLAIGFGLLVTRIITRQLGGEPDYASDVVRRIAEGDLTV 260 Query: 233 QFAVGKHGQGSVLHSAQRMLSQLSQVLRDVNTAAATLASASGQLTAAAEQLSKNSSQQAV 292 A+ K S+L + M+++L+ V+ V ++A LA+AS Q++A++ L++N+++QA Sbjct: 261 DIALRKGDSASLLAAMGNMVNRLTDVIGQVASSADALAAASEQVSASSSTLAQNATEQAT 320 Query: 293 DSEETSCSIGQISATVSQNTANANHTNVIANESARAATEGREAVRETLEAMHQIVAKIGV 352 E+TS S+ +ISATV+QN NA+ T+ IA++S+R EG EAVR+T++AM I KIG+ Sbjct: 321 SVEQTSASMEEISATVAQNAENASVTDGIASKSSRHTQEGGEAVRQTVDAMKSIADKIGI 380 Query: 353 IDDIAYQTNLLALNAAXPP--RGENGKGFAVVANEVRKLAERSQIAAQEIVSVSDHSVGL 410 IDDIAYQTNLLALNAA GE+G+GFAVVA EVRKLAERSQ+AAQEI +++ SV Sbjct: 381 IDDIAYQTNLLALNAAIEAGRAGEHGRGFAVVAAEVRKLAERSQVAAQEIGTLATSSVQT 440 Query: 411 AEKAGTLLEGMLPSIQQTADLVDAISLSARDQNASLVQIHSAIGQITQAIQLNAVASEEL 470 AE+AG LL M+PSI +TADLV I+ ++++Q A L QI+ AI ++++ Q NA ASEEL Sbjct: 441 AEQAGRLLGEMVPSIAKTADLVKEIAAASQEQRAGLDQINLAITELSRTTQTNASASEEL 500 Query: 471 SATSEEMNEQAHQLRELMGYF 491 +AT+EEM+ QA QL+ +MG+F Sbjct: 501 TATAEEMSAQALQLKSVMGFF 521 >ref|YP_003809990.1| Methyl-accepting chemotaxis protein [gamma proteobacterium HdN1] emb|CBL44331.1| Methyl-accepting chemotaxis protein [gamma proteobacterium HdN1] Length = 543 Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 195/506 (38%), Positives = 309/506 (61%), Gaps = 22/506 (4%) Query: 1 MKLSSKLAVCFAFGALLTAAVGADGVLNLFRVNAMLQEVYTANLLTIVNLNNANKIAVDI 60 +KL ++L + F A++ AVG G +N+ RVN M+ VY LL I +L N + D Sbjct: 7 LKLGTQLILAFLVVAMVAGAVGIVGSINISRVNGMMDAVYKDRLLPIRDLGNVRSDSADN 66 Query: 61 ATSMQNMEKSEERVERQRIADVLKYRLKDLGQAYDGYKSTTVTSELERTLQQQADVL--- 117 + + +++ + R + +++ Y TT+T ++ER+ +Q+D L Sbjct: 67 FRVLYELINAKDDAAINDAKSRITVRNTKIAESWRHYVGTTLT-DVERSFVEQSDQLTPT 125 Query: 118 ----LDAYVKRVNQRR---EQLLRDEDAKGNPDSLRIESDSLRSQLAALVDENVHQAKAN 170 ++ +++ + QRR Q + + K D L L ++A L D+ +A Sbjct: 126 YLASIEKFIRLIEQRRIDEAQAVLANEVKPTFDKLH----ELHVKIAELNDQIAKEANVE 181 Query: 171 KSRAAILERKTLGEVV-AVTALALLIAVALTLYMRRIFARQIGGDPREVMRILRKIADGD 229 + +G ++ A+ + +L+++ L + + R+ RQIGG+P ++++IA+GD Sbjct: 182 ADGVV----QDIGRIMTALIVIGILLSLGLGVLVSRMVVRQIGGEPSYAAEVVQRIANGD 237 Query: 230 LRVQFAVGKHGQGSVLHSAQRMLSQLSQVLRDVNTAAATLASASGQLTAAAEQLSKNSSQ 289 L V SVL + M +L V+ DV ++ +LASAS Q++++A+ LS+N+S+ Sbjct: 238 LTVDVQTRSGDTTSVLAMMRAMAEKLRSVMTDVRGSSDSLASASEQISSSAQALSQNASE 297 Query: 290 QAVDSEETSCSIGQISATVSQNTANANHTNVIANESARAATEGREAVRETLEAMHQIVAK 349 QA + EETS S+ +IS+TV+QN NA T+ IA +S+ A EG +AV++T+ AM +I +K Sbjct: 298 QASNIEETSASVEEISSTVAQNADNAKVTDTIATKSSSDAREGGDAVKQTVLAMQEIASK 357 Query: 350 IGVIDDIAYQTNLLALNAAXPP--RGENGKGFAVVANEVRKLAERSQIAAQEIVSVSDHS 407 I +IDDIAYQTNLLALNAA G++GKGFAVVA EVRKLAERSQ+AA+EI +V+ +S Sbjct: 358 ISIIDDIAYQTNLLALNAAIEAARAGDHGKGFAVVAAEVRKLAERSQVAAREIGTVATNS 417 Query: 408 VGLAEKAGTLLEGMLPSIQQTADLVDAISLSARDQNASLVQIHSAIGQITQAIQLNAVAS 467 V LAE+AG L+ +LPSI +TADLV IS ++ +Q + L QI SA+ Q++Q Q+ A AS Sbjct: 418 VALAEQAGHRLDELLPSINKTADLVQEISAASSEQTSGLTQISSAVAQLSQTTQMTASAS 477 Query: 468 EELSATSEEMNEQAHQLRELMGYFSL 493 E+LS+T+EEM+ QA +L++L+ YF L Sbjct: 478 EQLSSTAEEMSAQALELQQLVSYFQL 503 >ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62142.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 178/339 (52%), Positives = 245/339 (72%), Gaps = 13/339 (3%) Query: 159 LVDE----NVHQAKANKSRAAILERKTLGEVVAVTALALLIAVALTLYMRRIFARQIGGD 214 LVDE NV QA + + LE+K ++A + + L + L+ RI QIGG+ Sbjct: 213 LVDERTQANVRQAGKDYAE---LEQKIFW-LLAASVVVLFACLWLSY---RIIRSQIGGE 265 Query: 215 PREVMRILRKIADGDLRVQFAVGKHGQGSVLHSAQRMLSQLSQVLRDVNTAAATLASASG 274 PR+ M +LR++A+GDL V + K + SVL+S Q+M+++ + V+ DV+ A +LASAS Sbjct: 266 PRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTDVIGDVSGTATSLASASE 325 Query: 275 QLTAAAEQLSKNSSQQAVDSEETSCSIGQISATVSQNTANANHTNVIANESARAATEGRE 334 Q++++++ LS N++QQA + EETS S+ +I+AT++QN NA T+ IA+ SA AATEG E Sbjct: 326 QISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNARTTDGIASLSASAATEGGE 385 Query: 335 AVRETLEAMHQIVAKIGVIDDIAYQTNLLALNAAXPP--RGENGKGFAVVANEVRKLAER 392 AVRET+ AM QI +KIG+IDDIAYQTNLLALNAA GE+GKGFAVVA EVRKLAER Sbjct: 386 AVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAER 445 Query: 393 SQIAAQEIVSVSDHSVGLAEKAGTLLEGMLPSIQQTADLVDAISLSARDQNASLVQIHSA 452 SQ AAQEI++V++ SVGLAEKAG LL M+PSI++TADLV I+ ++ +Q+ L QI++A Sbjct: 446 SQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKTADLVQEIAAASHEQSTGLEQINNA 505 Query: 453 IGQITQAIQLNAVASEELSATSEEMNEQAHQLRELMGYF 491 + Q+ Q Q+ A ASEELSATSEEM+ QA L++LM +F Sbjct: 506 VHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFF 544 >ref|YP_002874597.1| putative methyl-accepting chemotaxis protein [Pseudomonas fluorescens SBW25] emb|CAY52104.1| putative methyl accepting chemotaxis protein [Pseudomonas fluorescens SBW25] Length = 552 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 197/513 (38%), Positives = 305/513 (59%), Gaps = 37/513 (7%) Query: 1 MKLSSKLAVCFAFGALLTAAVGADGVLNLFRVNAMLQEVYTANLLTI------------V 48 +K+S+KL F LT A+GA +L L VN Q++ + ++ Sbjct: 7 LKISTKLISSFLVVLALTGAMGAFAILQLGAVNQAAQDIKGNWMPSMRAAAGMRFFAANY 66 Query: 49 NLNNANKIAVDIATSMQNMEKSEERVERQRIADVLKYRLKDLGQAYDGYKSTTVTSELER 108 L I+ +IA EE+V+ +R A + + + Q Y+ ++++ +R Sbjct: 67 RLKENRHISTEIA---------EEKVQAEREAIEARQQFETRMQTYE----QLLSNDEDR 113 Query: 109 TLQQQADVLLDAYVKRVNQRREQLLRDEDAKGNPDSLRIES----DSLRSQLAALVDENV 164 L DAY+ Q E ++E+A+ LR ES D + S+L +V+ N Sbjct: 114 QLMLSVKSAWDAYIASSKQVLEFSRQNEEAQAR-SLLRGESKGHFDEVTSRLQKMVELND 172 Query: 165 HQAKANKSRAAILERKTLGEVVAVTALALLIAVALTLYMRRIFARQIGGDPREVMRILRK 224 A A + ++L + ++AV +LLI + L +++ RI +R + R+ + Sbjct: 173 AGATAAGDKGSVLYESSRMSIIAVLVASLLIGLGLAIFIARIISRPL----RQAASAAEQ 228 Query: 225 IADGDLRVQFAVG-KHGQGSVLHSAQRMLSQLSQVLRDVNTAAATLASASGQLTAAAEQL 283 +A+G+L G K G VL++ + M+ +L+ ++ +V AA LASAS Q++A A+ + Sbjct: 229 LAEGNLNAHIEPGGKDETGLVLNAMRNMVGKLAHIIGEVRNAADNLASASEQVSATAQSM 288 Query: 284 SKNSSQQAVDSEETSCSIGQISATVSQNTANANHTNVIANESARAATEGREAVRETLEAM 343 S+ +S+QA EETS S+ Q+SA+++QNT NA T+ +A+++A+ ATEG E+V++T+ AM Sbjct: 289 SQATSEQAASVEETSASVEQMSASINQNTENAKVTDGMASKAAKEATEGGESVQQTVVAM 348 Query: 344 HQIVAKIGVIDDIAYQTNLLALNAAXPPR--GENGKGFAVVANEVRKLAERSQIAAQEIV 401 +I +I +IDDIAYQTNLLALNAA GE+GKGFAVVA EVRKLAERSQ+AAQEI Sbjct: 349 KKIAQRISIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIG 408 Query: 402 SVSDHSVGLAEKAGTLLEGMLPSIQQTADLVDAISLSARDQNASLVQIHSAIGQITQAIQ 461 +S SV +AEKAG LL+ M+PSI +T+DLV IS ++ +Q A + QI++A+ Q+ Q Q Sbjct: 409 ELSSSSVEMAEKAGKLLDEMVPSINKTSDLVQEISAASEEQAAGVAQINTAMTQLNQVTQ 468 Query: 462 LNAVASEELSATSEEMNEQAHQLRELMGYFSLD 494 NA +SEEL+AT+EEM+ QA QL++ M +F LD Sbjct: 469 QNASSSEELAATAEEMSSQAEQLQQAMSFFVLD 501 >ref|YP_003812140.1| Probable methyl-accepting chemotaxis [gamma proteobacterium HdN1] emb|CBL46497.1| Probable methyl-accepting chemotaxis [gamma proteobacterium HdN1] Length = 619 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 159/312 (50%), Positives = 221/312 (70%), Gaps = 4/312 (1%) Query: 205 RIFARQIGGDPREVMRILRKIADGDLRVQFAVGKHGQGSVLHSAQRMLSQLSQVLRDVNT 264 RI Q+G +PREVM L+ +A+G+L V+ + H SVL++ +R +S+L + + +V+ Sbjct: 271 RILRVQLGSEPREVMEKLQSVAEGNLAVKIELAPHDHSSVLYNLERTVSRLHETISEVHQ 330 Query: 265 AAATLASASGQLTAAAEQLSKNSSQQAVDSEETSCSIGQISATVSQNTANANHTNVIANE 324 ++A L SA+ Q++ +++ LS+N+S+QA EET S+ QISATV+QN+ NA TN +A++ Sbjct: 331 SSAALTSAADQISTSSQALSQNASEQAASVEETGASVEQISATVAQNSDNAVVTNKVASQ 390 Query: 325 SARAATEGREAVRETLEAMHQIVAKIGVIDDIAYQTNLLALNAAXPP--RGENGKGFAVV 382 SA+ A +G EAVR +EAM +I AK+G+IDDIAYQTNLLALNAA G++GK FAVV Sbjct: 391 SAKDARDGGEAVRTMVEAMRKIAAKVGIIDDIAYQTNLLALNAAIEAARAGDHGKSFAVV 450 Query: 383 ANEVRKLAERSQIAAQEIVSVSDHSVGLAEKAGTLLEGMLPSIQQTADLVDAISLSARDQ 442 A EVRKLAERS++AAQEI V+ SV L E AGTLLE M+P+IQQTADLV IS ++ +Q Sbjct: 451 AGEVRKLAERSRVAAQEISEVAGESVNLTEHAGTLLERMVPAIQQTADLVQEISAASTEQ 510 Query: 443 NASLVQIHSAIGQITQAIQLNAVASEELSATSEEMNEQAHQLRELMGYFSLDVSDHENES 502 A L QI+ AI Q+ Q+ Q NA +SE+LS+TSEEM+ A QL+E + YF L SD + + Sbjct: 511 TAGLEQINLAIAQLAQSTQSNAASSEQLSSTSEEMSALARQLQEKISYFQL--SDSHHAT 568 Query: 503 ETPKGPVHEGKY 514 P P G + Sbjct: 569 SIPAFPGSSGGH 580