BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0167.p (411 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774054.1| response regulator [Herbaspirillum seropedic... 549 e-154 ref|YP_004846744.1| response regulator receiver modulated diguan... 439 e-121 ref|YP_004235926.1| response regulator receiver modulated diguan... 400 e-109 ref|ZP_03698247.1| response regulator receiver modulated diguany... 392 e-107 ref|ZP_08403124.1| response regulator receiver modulated diguany... 389 e-106 >ref|YP_003774054.1| response regulator [Herbaspirillum seropedicae SmR1] gb|ADJ62146.1| response regulator ( EAL domain) protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 280/402 (69%), Positives = 343/402 (85%), Gaps = 1/402 (0%) Query: 6 IETLLIVDDSSLQRLHTVGLMRELGVEMIYEAGDGQEALDLLALLKLPPSLVIVDLEMPG 65 I++ L+VDDS++QR H+V L+++LG ++IYEAG+G EALDLL LLKLPPSL++VDLEMPG Sbjct: 10 IKSALVVDDSAVQRQHSVQLLQQLGADLIYEAGNGNEALDLLGLLKLPPSLMVVDLEMPG 69 Query: 66 MDGVEFIQHLQERKLNFPIIVASSRETSLLASVETMIEALGMHVLGALQKPLNQEKILGA 125 MDG+E IQ LQ++ ++ P+IVASSRETSLL SVETMI ALGM+++G LQKPLNQ ++ A Sbjct: 70 MDGIELIQQLQQKGIDVPLIVASSRETSLLLSVETMIHALGMNLIGVLQKPLNQHQLRAA 129 Query: 126 LKSFDGNLALPAKD-DALPSVCETELAAAIRNGDIVAFYQPKVDIRTGMLKGVEALARWM 184 L+SF + D D PS+CE +L AAI G ++ ++QPKVD++TG+LKGVEALARW+ Sbjct: 130 LESFRPHGTEHQPDHDPQPSMCEHDLGAAIEGGQVLPYFQPKVDVQTGILKGVEALARWI 189 Query: 185 HPTNGMVPPDRFIPLAEQSGLIHELTLSMLTQAMAQAALWNERGLPLKVAVNLSPLSLDI 244 HP GMV PDRFIPLAEQ GLIH LTL+M+ QAM QAA+W+ RGL +KVAVNLSPL L+ Sbjct: 190 HPERGMVSPDRFIPLAEQCGLIHPLTLAMMDQAMGQAAIWHSRGLAIKVAVNLSPLLLEK 249 Query: 245 PGFAQKIVDLLAQHDLQADQMVLEITEGSVVANLGMALGTLARLRLKGFGLSIDDYGTGF 304 P F +I++L+ +H L A+ +VLEITE SVVA+ G +LG LARLRLKGFGLSIDDYGTGF Sbjct: 250 PDFLHRILELVDKHALPAEHVVLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGF 309 Query: 305 SSMQQLARIPFTELKIDRSFVHGAHSRQNLRVILQSALDMAKRLELVTVAEGIETIEDWR 364 SSMQQLARIPFTELKIDRSFVHGAH R+NLRVILQSALDMA+RLELVTVAEG+ET+EDWR Sbjct: 310 SSMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWR 369 Query: 365 LLQESGCSIGQGYLIARPMPANDLPVWLKGHHRRLGELRPLA 406 LLQ+ GCS+GQGYLI +PMPA++LP+WLKGHHRRL ELRP+A Sbjct: 370 LLQDFGCSLGQGYLIGKPMPAHELPLWLKGHHRRLHELRPVA 411 >ref|YP_004846744.1| response regulator receiver modulated diguanylate phosphodiesterase [Pseudogulbenkiania sp. NH8B] dbj|BAK76330.1| response regulator receiver modulated diguanylate phosphodiesterase [Pseudogulbenkiania sp. NH8B] Length = 409 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/402 (54%), Positives = 287/402 (71%), Gaps = 4/402 (0%) Query: 1 MMPYTIETLLIVDDSSLQRLHTVGLMRELGVEMIYEAGDGQEALDLLALLKLPPSLVIVD 60 M P +ET+LIVDDS +QRLH VGL+R+ G+ I EA DG +AL+LL+ L P L++VD Sbjct: 1 MSPPRVETVLIVDDSLVQRLHMVGLLRQCGIHGILEAVDGNQALELLSALDTLPHLIVVD 60 Query: 61 LEMPGMDGVEFIQHLQERKLNFPIIVASSRETSLLASVETMIEALGMHVLGALQKPLNQE 120 LEMPGMDGVEFI + +R + P++++S+R+ SL+ SVE M +AL + +L A +KPL ++ Sbjct: 61 LEMPGMDGVEFILQMMKRNVMAPLVISSNRDLSLICSVENMAQALEIPILAAWKKPLTKQ 120 Query: 121 KILGALKSFDG----NLALPAKDDALPSVCETELAAAIRNGDIVAFYQPKVDIRTGMLKG 176 + L + + P S ELA AI ++ +YQP++D+++G + G Sbjct: 121 HLAEILHHSPDRPPPSHSTPETHKEASSTGAHELALAISRHQLLPYYQPQIDLKSGTITG 180 Query: 177 VEALARWMHPTNGMVPPDRFIPLAEQSGLIHELTLSMLTQAMAQAALWNERGLPLKVAVN 236 VE LARW H G +PPD FIPLAE+ LIH+LTL + QA AQAA W G+ L VAVN Sbjct: 181 VEVLARWPHAEKGFIPPDHFIPLAEKHRLIHDLTLEIAGQAFAQAAHWRRSGVHLTVAVN 240 Query: 237 LSPLSLDIPGFAQKIVDLLAQHDLQADQMVLEITEGSVVANLGMALGTLARLRLKGFGLS 296 LSP LD+P F +I LL Q+ L A+Q++ E+TE S+ A+LG+AL LARLRLKGFGLS Sbjct: 241 LSPRLLDLPDFVSEIDALLQQYQLPAEQVIWEVTESSLAADLGIALANLARLRLKGFGLS 300 Query: 297 IDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHSRQNLRVILQSALDMAKRLELVTVAEG 356 IDDYGTGFSSMQQL+RIPFTELKIDRSFVH AH R++LRVILQSALDMA ++ LVTVAEG Sbjct: 301 IDDYGTGFSSMQQLSRIPFTELKIDRSFVHRAHQREHLRVILQSALDMAHKMSLVTVAEG 360 Query: 357 IETIEDWRLLQESGCSIGQGYLIARPMPANDLPVWLKGHHRR 398 IET+EDW+LL+E GC++ QGY IA+PMP W+K + R Sbjct: 361 IETLEDWKLLREFGCNLAQGYFIAKPMPGETFTGWVKTQNTR 402 >ref|YP_004235926.1| response regulator receiver modulated diguanylate phosphodiesterase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47359.1| response regulator receiver modulated diguanylate phosphodiesterase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 410 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/398 (52%), Positives = 269/398 (67%), Gaps = 6/398 (1%) Query: 8 TLLIVDDSSLQRLHTVGLMRELGVEMIYEAGDGQEALDLLALLKLPPSLVIVDLEMPGMD 67 ++L+VDDS+ QR H V L +LG+ + EA G+ AL+++A + PSLV+VDLEMP MD Sbjct: 15 SVLVVDDSTPQRQHAVRLCHDLGIGQVLEACHGRHALEVIAAMDPQPSLVVVDLEMPEMD 74 Query: 68 GVEFIQHLQERKLNFPIIVASSRETSLLASVETMIEALGMHVLGALQKPLNQEKILGALK 127 G+E I+ LQ++ L PI++ S+ +LL SV++ LG V+ L KPL + L+ Sbjct: 75 GIELIEALQQQGLRIPILLLSAHGDALLDSVQS----LGTSVVRGLHKPLASGDLQAVLE 130 Query: 128 SFDGNLALPAKDDALPS--VCETELAAAIRNGDIVAFYQPKVDIRTGMLKGVEALARWMH 185 A A P + L AIR G I +QPK D RTGML+GVEALARW H Sbjct: 131 EVLSPSAPAADRRRAPRMPIDAAMLEQAIREGGITPHFQPKADTRTGMLRGVEALARWNH 190 Query: 186 PTNGMVPPDRFIPLAEQSGLIHELTLSMLTQAMAQAALWNERGLPLKVAVNLSPLSLDIP 245 P GMVPPD FIPLAE +GLIH LTLSM+ ++ Q A W RG+ L +++NLSP L +P Sbjct: 191 PVLGMVPPDEFIPLAESAGLIHALTLSMMERSFLQCAAWQSRGMRLTLSINLSPQLLALP 250 Query: 246 GFAQKIVDLLAQHDLQADQMVLEITEGSVVANLGMALGTLARLRLKGFGLSIDDYGTGFS 305 +I ++ L Q++LE+TEGS+V A L RLRLKGFGLSIDDYGTGFS Sbjct: 251 DIVNEICARQLRYGLAPSQLMLEVTEGSMVETSSAAHSALVRLRLKGFGLSIDDYGTGFS 310 Query: 306 SMQQLARIPFTELKIDRSFVHGAHSRQNLRVILQSALDMAKRLELVTVAEGIETIEDWRL 365 S+QQL+RIPF+ELKIDRSFVHGAH R++LRVIL+SALD+A+RL L TVAEG+E +EDWRL Sbjct: 311 SLQQLSRIPFSELKIDRSFVHGAHRRKSLRVILESALDLARRLNLSTVAEGVEHLEDWRL 370 Query: 366 LQESGCSIGQGYLIARPMPANDLPVWLKGHHRRLGELR 403 LQ+ GC+ QG+LIA+ MP DLP W + H RL LR Sbjct: 371 LQDFGCTSAQGWLIAKAMPGEDLPTWNRTHRTRLDALR 408 >ref|ZP_03698247.1| response regulator receiver modulated diguanylate phosphodiesterase [Lutiella nitroferrum 2002] gb|EEG08989.1| response regulator receiver modulated diguanylate phosphodiesterase [Lutiella nitroferrum 2002] Length = 369 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/361 (54%), Positives = 254/361 (70%), Gaps = 4/361 (1%) Query: 42 EALDLLALLKLPPSLVIVDLEMPGMDGVEFIQHLQERKLNFPIIVASSRETSLLASVETM 101 +AL+LLA L P L++VDLEMPGMDGVEFI + +R + P++++S+R+ SL+ SVE M Sbjct: 2 QALELLAGLDTLPHLIVVDLEMPGMDGVEFILQMMKRNVMAPLVISSNRDLSLICSVENM 61 Query: 102 IEALGMHVLGALQKPLNQEKILGALKSFDGNLALPA----KDDALPSVCETELAAAIRNG 157 ALG+ +L A +KPL ++ + L S ELA AI Sbjct: 62 AHALGIPILAAWKKPLTKQHLAEILHHSPDRPPPSPSAPETHKEASSTGAHELALAISRH 121 Query: 158 DIVAFYQPKVDIRTGMLKGVEALARWMHPTNGMVPPDRFIPLAEQSGLIHELTLSMLTQA 217 ++ +YQP++D+++G + GVE LARW H G +PPD FIPLAE+ LIH+LTL + QA Sbjct: 122 QLLPYYQPQIDLKSGTITGVEVLARWPHAEKGFIPPDHFIPLAEKHRLIHDLTLEIAGQA 181 Query: 218 MAQAALWNERGLPLKVAVNLSPLSLDIPGFAQKIVDLLAQHDLQADQMVLEITEGSVVAN 277 AQAA W G+ L VAVNLSP LD+P F ++ LL Q+ L A Q++ E+TE S+ A+ Sbjct: 182 FAQAAHWRRSGVHLTVAVNLSPRLLDLPDFVSEVDALLQQYQLPAAQVIWEVTESSLAAD 241 Query: 278 LGMALGTLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHSRQNLRVI 337 LG+AL LARLRLKGFGLSIDDYGTGFSSMQQL+RIPFTELKIDRSFVH AH R++LRVI Sbjct: 242 LGIALANLARLRLKGFGLSIDDYGTGFSSMQQLSRIPFTELKIDRSFVHRAHQREHLRVI 301 Query: 338 LQSALDMAKRLELVTVAEGIETIEDWRLLQESGCSIGQGYLIARPMPANDLPVWLKGHHR 397 LQSALDMA ++ LVTVAEGIET+EDW+LL+E GC++ QGY IA+PMP+ W+K + Sbjct: 302 LQSALDMAHKMSLVTVAEGIETLEDWKLLREFGCNLAQGYFIAKPMPSETFTGWVKTQNT 361 Query: 398 R 398 R Sbjct: 362 R 362 >ref|ZP_08403124.1| response regulator receiver modulated diguanylate phosphodiesterase [Rubrivivax benzoatilyticus JA2] gb|EGJ11457.1| response regulator receiver modulated diguanylate phosphodiesterase [Rubrivivax benzoatilyticus JA2] Length = 411 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/399 (50%), Positives = 264/399 (66%), Gaps = 2/399 (0%) Query: 5 TIETLLIVDDSSLQRLHTVGLMRELGVEMIYEAGDGQEALDLLALLKLPPSLVIVDLEMP 64 + ++L+VDDS +QR H L RELGV + E G++AL+ L L+ PP VIVDLEMP Sbjct: 7 VVASVLVVDDSEVQREHVATLCRELGVSRVDEVSGGEQALERLRALQAPPQAVIVDLEMP 66 Query: 65 GMDGVEFIQHLQERKLNFPIIVASSRETSLLASVETMIEALGMHVLGALQKPLNQEKILG 124 GMDG+E I+ + P++V S+ E +L+ +VE + +GM VL AL+KP+ E + Sbjct: 67 GMDGIELIEAMYRLGHLLPLVVVSAHEGALIHTVEALAREIGMPVLAALRKPIAAEVLAD 126 Query: 125 ALKSFDGNLALPAKDDALPSVCETELAAAIRNGDIVAFYQPKVDIRTGMLKGVEALARWM 184 L+ D + A ALP +LA AI +GDI +QPKV +RTG+L+GVEALARW Sbjct: 127 VLRRDDFPQSPRAAPVALPPA--EDLARAIGHGDIAVHFQPKVCVRTGLLRGVEALARWR 184 Query: 185 HPTNGMVPPDRFIPLAEQSGLIHELTLSMLTQAMAQAALWNERGLPLKVAVNLSPLSLDI 244 HP G VP RF+ LAE GLI EL+ +++ A+ A W RGL L +A+NLSP L + Sbjct: 185 HPQAGDVPAGRFVELAEARGLIRELSFAVIETALGHLAHWCSRGLRLSLALNLSPRLLTV 244 Query: 245 PGFAQKIVDLLAQHDLQADQMVLEITEGSVVANLGMALGTLARLRLKGFGLSIDDYGTGF 304 ++V + +H L+ Q+VLE+TE SVVA +G L RLRLKGFGLSIDDYGTG+ Sbjct: 245 TDLVAELVARVREHGLEPSQVVLELTESSVVAAYDGGIGVLTRLRLKGFGLSIDDYGTGY 304 Query: 305 SSMQQLARIPFTELKIDRSFVHGAHSRQNLRVILQSALDMAKRLELVTVAEGIETIEDWR 364 +SM QLARIPF+ELK+DR FVH A R R++L+SAL+ A+R ELV+VAEG+E DWR Sbjct: 305 ASMSQLARIPFSELKVDRQFVHDASERHAQRMLLESALETARRFELVSVAEGVEREADWR 364 Query: 365 LLQESGCSIGQGYLIARPMPANDLPVWLKGHHRRLGELR 403 LLQ GC + QGYLIARPM A L WL+ H RL ELR Sbjct: 365 LLQSLGCDVAQGYLIARPMAAEALQPWLRNHQTRLAELR 403