BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0164.p         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004754486.1| poly(A) polymerase [Collimonas fungivorans T...    99   3e-19
ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Ma...    92   2e-17
ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacteriu...    90   1e-16
ref|YP_001100880.1| poly(A) polymerase I [Herminiimonas arsenico...    89   3e-16
ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymera...    87   1e-15

>ref|YP_004754486.1| poly(A) polymerase [Collimonas fungivorans Ter331]
 gb|AEK63663.1| Poly(A) polymerase [Collimonas fungivorans Ter331]
          Length = 463

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 56/67 (83%), Gaps = 1/67 (1%)

Query: 1  MIKKFIRSFLGKKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGGA 60
          MIKK IRS LGKKK+ D T+P +L  KQHGI+ QLVSPNA+RVT+TLQ  GFKAFIVGGA
Sbjct: 1  MIKKLIRSILGKKKK-DPTQPLILGPKQHGINPQLVSPNAVRVTKTLQDNGFKAFIVGGA 59

Query: 61 VRDLLXG 67
          VRDLL G
Sbjct: 60 VRDLLLG 66


>ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
 gb|ABR89711.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
          Length = 455

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 1  MIKKFIRSFLG-KKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGG 59
          MIKK IR  LG K+K  DTT+P VL+ K+H ID +LVS NA+RVT TLQQAGFKAF+VGG
Sbjct: 1  MIKKLIRRILGTKQKTGDTTQPVVLTAKEHRIDPKLVSANAVRVTSTLQQAGFKAFLVGG 60

Query: 60 AVRDLLXG 67
          AVRDLL G
Sbjct: 61 AVRDLLLG 68


>ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30466.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
          Length = 455

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 1  MIKKFIRSFLGKK-KELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGG 59
          MI KF R  LG K K +D + P +LS K+HGID +LVS NAIRVTQ LQQAGFKAF+VGG
Sbjct: 1  MITKFFRRILGSKSKPIDRSIPVMLSAKEHGIDPKLVSSNAIRVTQGLQQAGFKAFLVGG 60

Query: 60 AVRDLLXG 67
          AVRDLL G
Sbjct: 61 AVRDLLLG 68


>ref|YP_001100880.1| poly(A) polymerase I [Herminiimonas arsenicoxydans]
 emb|CAL62759.1| Poly(A) polymerase [Herminiimonas arsenicoxydans]
          Length = 453

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 54/68 (79%), Gaps = 1/68 (1%)

Query: 1  MIKKFIRSFLG-KKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGG 59
          MIKKFIR  LG K+K  D T+P  L+ ++H ID +LVS NAIRVT TLQ+AGFKAF+VGG
Sbjct: 1  MIKKFIRRILGTKQKTGDHTQPVTLTAQEHRIDPKLVSANAIRVTSTLQEAGFKAFLVGG 60

Query: 60 AVRDLLXG 67
          AVRDLL G
Sbjct: 61 AVRDLLLG 68


>ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ62148.1| tRNA nucleotidyltransferase/poly(A) polymerase protein
          [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 53/89 (59%), Gaps = 22/89 (24%)

Query: 1  MIKKFIRSFLGKKKELDTT----------------------EPTVLSQKQHGIDLQLVSP 38
          MIKK IRS LG+ K                           EP VL  K+HGID  LVSP
Sbjct: 1  MIKKLIRSILGRGKTAAAAASAEPPAPARKTRAKAGADGKIEPDVLGPKEHGIDPSLVSP 60

Query: 39 NAIRVTQTLQQAGFKAFIVGGAVRDLLXG 67
          NA+RVTQTLQ+AG+KAFIVGGAVRDLL G
Sbjct: 61 NAVRVTQTLQEAGYKAFIVGGAVRDLLLG 89