BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0145.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774073.1| two component response regulator protein [He...   154   4e-36
ref|YP_004754468.1| response regulators consisting of a CheY-lik...   152   1e-35
ref|YP_001354553.1| two-components system response regulator [Ja...   150   5e-35
ref|YP_582620.1| DNA-binding response regulator in two-component...   150   8e-35
ref|ZP_08273335.1| Response regulators consisting of a CheY-like...   150   9e-35

>ref|YP_003774073.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62165.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 237

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 77/77 (100%)

Query: 1   MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 60
           ML+LSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGG+
Sbjct: 147 MLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGV 206

Query: 61  RIATVRGLGYCLEKLPE 77
           RIATVRGLGYCLEKLPE
Sbjct: 207 RIATVRGLGYCLEKLPE 223


>ref|YP_004754468.1| response regulators consisting of a CheY-like receiver
           domain-containing protein and a winged-helix DNA-binding
           domain-containing protein [Collimonas fungivorans
           Ter331]
 gb|AEK63645.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Collimonas fungivorans Ter331]
          Length = 247

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)

Query: 1   MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 60
           MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGG+
Sbjct: 147 MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGV 206

Query: 61  RIATVRGLGYCLEKLPES 78
           RIATVRGLGYCLEK+ E 
Sbjct: 207 RIATVRGLGYCLEKISEP 224


>ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 233

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 78/87 (89%), Gaps = 4/87 (4%)

Query: 1   MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 60
           MLDLSARELGLLEVLLQR+GRLVSKEQLVDHLCEW EEVSNNAIEVYVHRLRKKIE+GG+
Sbjct: 147 MLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCEWSEEVSNNAIEVYVHRLRKKIEIGGL 206

Query: 61  RIATVRGLGYCLEKL----PESIASAG 83
           RIATVRGLGYCLEK     P +IA  G
Sbjct: 207 RIATVRGLGYCLEKFTETAPNTIAPPG 233


>ref|YP_582620.1| DNA-binding response regulator in two-component regulatory system
           with Rmet_0464 [Cupriavidus metallidurans CH34]
 gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system
           with Rmet_0464 [Cupriavidus metallidurans CH34]
          Length = 229

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/83 (86%), Positives = 78/83 (93%)

Query: 1   MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 60
           MLDLSARE+GLLE+LL R+GRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI
Sbjct: 147 MLDLSAREVGLLEILLTRSGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 206

Query: 61  RIATVRGLGYCLEKLPESIASAG 83
           RIATVRGLGYCLEK   ++A+ G
Sbjct: 207 RIATVRGLGYCLEKYQPAVAAHG 229


>ref|ZP_08273335.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33207.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 228

 Score =  150 bits (378), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/82 (89%), Positives = 78/82 (95%)

Query: 1   MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 60
           MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIE+GG+
Sbjct: 147 MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIELGGV 206

Query: 61  RIATVRGLGYCLEKLPESIASA 82
           RIATVRGLGYCLEK  ++ A+ 
Sbjct: 207 RIATVRGLGYCLEKYIDAPAAT 228