BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0143.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774074.1| hypothetical protein Hsero_0647 [Herbaspiril...    85   3e-15

>ref|YP_003774074.1| hypothetical protein Hsero_0647 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62166.1| hypothetical protein Hsero_0647 [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 84/138 (60%), Gaps = 4/138 (2%)

Query: 1   MKRLFAILLICLLPVQVFAGMLTYKTAIDSVALEQQVQQQEQLRQALELAAAAGSDVSAA 60
           MKRL+ +LLICLLPVQVFA +LTY +++   A +       Q      LA    S    A
Sbjct: 1   MKRLWVLLLICLLPVQVFAAVLTYASSM--AATDFAAPVPVQAAAVQHLAGKTVSLSDQA 58

Query: 61  ADKAAQEQALADATDGDDD-LSYADT-EDFSSHAGVGDETVLNPALAFVSDSATLAPALR 118
           A   A +  LAD    D+D   Y D  EDFS+HAG+GDE VL  +LA V  +++LAPAL 
Sbjct: 59  AADDASQALLADNGSSDEDSAGYLDNGEDFSTHAGIGDEPVLIQSLAVVPQASSLAPALS 118

Query: 119 SDDARQPPFLPLAGRPPR 136
           SD A QPPFLP AGRPPR
Sbjct: 119 SDAALQPPFLPRAGRPPR 136