BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0139.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004354060.1| membrane protein [Pseudomonas brassicacearum... 296 3e-78 gb|EFV82340.1| hypothetical protein HMPREF0005_00705 [Achromobac... 285 7e-75 ref|YP_001525848.1| major facilitator superfamily permease [Azor... 281 2e-73 ref|YP_001569595.1| hypothetical protein SARI_00527 [Salmonella ... 280 3e-73 ref|NP_461314.1| hypothetical protein STM2372 [Salmonella enteri... 278 2e-72 >ref|YP_004354060.1| membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69056.1| Conserved hypothetical protein, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 408 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 172/383 (44%), Positives = 242/383 (63%), Gaps = 8/383 (2%) Query: 16 LLPLVAIVFTSFLCIGIPLPALPLHVNGVLGFSALTVGWVVGIQSFSTILSRKFSGSYCD 75 LLPL VF FL +G+ LP LPLH++ LG L +G VVG Q + +LSR ++G++ D Sbjct: 26 LLPLTLTVFIGFLTLGMQLPVLPLHLHDTLGMGTLVIGLVVGAQFAAALLSRAWAGNFAD 85 Query: 76 RHGPKRAVAVGLPMAAAAGLLYLAS-TLIADAGASLEVLFIGRLLMGPAESLFLTGTMTW 134 G KRAV VGL AA +GL+YL S +A S+ +L GR+L+ ESL +TG + W Sbjct: 86 MRGGKRAVMVGLVTAAVSGLVYLLSLAFVATPVTSVWLLLGGRVLLALGESLIVTGALGW 145 Query: 135 GIGRVGMQRTGKVMAWQGIAMFAALGLGAPIGIAIQQRFGFAGVALTTMVLPLVGLAIAT 194 GI VG Q GKVMAW GIAM+ A LGAP+G+A+ +GF G+A+ T+ +PL+ LAI Sbjct: 146 GIDLVGAQHAGKVMAWNGIAMYGAYALGAPLGVALNSGWGFTGIAVATIFIPLLALAIVA 205 Query: 195 TLRGLPALGNKGGGVAMSEVLRLIWRFGMALALSAMPFAIITSFLVLLYASNNWSGAGIA 254 +R + + +VL +W GM LA ++ F +IT+F+ LL+A+ +W A +A Sbjct: 206 GVRAVAPTATRRA--PFYKVLGAVWVPGMGLAFCSVGFGVITAFIALLFAARDWGNASLA 263 Query: 255 ILGFSVGYVGVRLFFAHLPDRIGGAKVGAVSVAIELVGQLLLWQSHDPLMAGLGTLLTGI 314 F + ++G RL F HLPD+IGGA+V V V IE VGQLL+W + L+A LG L G Sbjct: 264 FTAFGLAFIGARLLFGHLPDKIGGARVALVCVVIEAVGQLLIWGADTALVAYLGAALPGF 323 Query: 315 GFSLVFPSMGVQAMARVPAHSRGLAVATFMAFIDLAAGLTGPVVGVLIGYFGYGSAFLAG 374 G+SL FP GV+A+ R PA +R LA+ ++AF+D++ GL+ P+ G L G +G G+ +L G Sbjct: 324 GYSLAFPGFGVEAVKRAPAQNRSLAMGAYVAFLDISLGLSSPLAGALAGTWGIGAVYLGG 383 Query: 375 AA----ACVLALLLMVAGMS-RQ 392 A A V+AL L++ GM RQ Sbjct: 384 AVTVMLAFVVALALVMPGMQGRQ 406 >gb|EFV82340.1| hypothetical protein HMPREF0005_00705 [Achromobacter xylosoxidans C54] Length = 402 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 168/366 (45%), Positives = 230/366 (62%), Gaps = 4/366 (1%) Query: 16 LLPLVAIVFTSFLCIGIPLPALPLHVNGVLGFSALTVGWVVGIQSFSTILSRKFSGSYCD 75 +LPL VF F +G+P+P LPL+V+GVL AL VG V G+Q + +LSR +SGS D Sbjct: 24 ILPLALAVFVGFFMVGLPMPVLPLYVDGVLAQGALVVGIVAGLQFAAALLSRAWSGSLAD 83 Query: 76 RHGPKRAVAVGLPMAAAAGLLYLASTLIADAG-ASLEVLFIGRLLMGPAESLFLTGTMTW 134 R G +RAV G + + AGL YL + A+ A+L L GR LMG AESL +TG ++W Sbjct: 84 RRGARRAVVTGFLLGSVAGLFYLLADAQAEQPRAALAALMAGRALMGCAESLIVTGALSW 143 Query: 135 GIGRVGMQRTGKVMAWQGIAMFAALGLGAPIGIAIQQRFGFAGVALTTMVLPLVGLAIAT 194 G+GRVG Q G+VMAW G+A++AA GLGAP G+ + GF G+A T+ +P++ LA+ Sbjct: 144 GVGRVGPQNAGRVMAWIGVAIYAAFGLGAPAGMRLYGAAGFEGIAWATVFIPVLALALVL 203 Query: 195 TLRGLPALGNKGGGVAMSEVLRLIWRFGMALALSAMPFAIITSFLVLLYASNNWSGAGIA 254 RG+PA G G VL ++ G+ LAL+++ F +IT+F+ LL+A W GA Sbjct: 204 PQRGVPAAG--GVRTPFYRVLGMVMLPGLGLALTSVGFGVITAFISLLFAQRGWDGAAWM 261 Query: 255 ILGFSVGYVGVRLFFAHLPDRIGGAKVGAVSVAIELVGQLLLWQSHDPLMAGLGTLLTGI 314 F VG++ RLFFA LPD++GGA+V V V IE GQ L+W P A G LL+G Sbjct: 262 FSLFGVGFIVARLFFAGLPDKLGGARVALVCVLIEAAGQWLIWMGPTPAWAFAGALLSGA 321 Query: 315 GFSLVFPSMGVQAMARVPAHSRGLAVATFMAFIDLAAGLTGPVVGVLIGYFGYGSAFLAG 374 G+SL FP+ GV+A+ RVP SRG A+ ++AF+D+A G+ P G L G GYG+ + G Sbjct: 322 GYSLAFPAFGVEAVRRVPPASRGAAMGAYVAFLDVALGIASPAAGWLAGMRGYGAVYALG 381 Query: 375 AAACVL 380 AC L Sbjct: 382 -GACAL 386 >ref|YP_001525848.1| major facilitator superfamily permease [Azorhizobium caulinodans ORS 571] dbj|BAF88930.1| permeases of the major facilitator superfamily [Azorhizobium caulinodans ORS 571] Length = 404 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 191/383 (49%), Positives = 254/383 (66%), Gaps = 7/383 (1%) Query: 16 LLPLVAIVFTSFLCIGIPLPALPLHVNGVLGFSALTVGWVVGIQSFSTILSRKFSGSYCD 75 L PL F + L IGIPLP L + V+ LGF A+ VG VVG QS T+LSR +G+ D Sbjct: 20 LFPLTLSAFLAVLSIGIPLPVLSIRVHDGLGFGAVLVGVVVGSQSVVTLLSRGMAGTTVD 79 Query: 76 RHGPKRAVAVGLPMAAAAGLLYLASTLIADAGASLEVLFIGRLLMGPAESLFLTGTMTWG 135 HG K AV GLP+AA AG LYLAS + D SL VL GR++ G AESLF+TG + WG Sbjct: 80 SHGAKWAVVAGLPLAACAGGLYLASLALPDPSFSLAVLIAGRMIHGIAESLFITGFLAWG 139 Query: 136 IGRVGMQRTGKVMAWQGIAMFAALGLGAPIGIAIQQRFGFAGVALTTMVLPLVGLAIATT 195 IGRVG+ + G VM W GIA+ AAL +GAP+G+A Q+ FGFA VAL + PL+ LAI Sbjct: 140 IGRVGVAKAGLVMGWNGIAVSAALAVGAPLGVAAQESFGFAAVALLALTAPLLALAIVVC 199 Query: 196 LRGLP-ALGNKGGGVAMSEVLRLIWRFGMALALSAMPFAIITSFLVLLYASNNWSGAGIA 254 + +P + + VL L+WRFG+ LALS PFA++ SF+VL + W+ AG+A Sbjct: 200 VAAVPRSEAPAAPRLPFVRVLGLVWRFGLVLALSTAPFALLGSFVVLTFTERGWAHAGLA 259 Query: 255 ILGFSVGYVGVRLFFAHLPDRIGGAKVGAVSVAIELVGQLLL----WQSHDPLMAGL-GT 309 + + +G+V VR F H+PDR+GGA V +S+A+E VGQ LL + D + GL G Sbjct: 260 LSLYGIGFVLVRFAFGHMPDRLGGATVSLISLAVEGVGQALLFAGGYGGFDHVWVGLAGA 319 Query: 310 LLTGIGFSLVFPSMGVQAMARVPAHSRGLAVATFMAFIDLAAGLTGPVVGVLIGYFGYGS 369 LTG GFSLV P+MGV+A+ RVP S+G A+ +FMAF+D+A G+TGP+ G+L G G+GS Sbjct: 320 ALTGAGFSLVLPAMGVEAVRRVPRESQGAAIGSFMAFLDIALGVTGPLAGLLAGVAGFGS 379 Query: 370 AFLAGAAACVLALLLMVAGMSRQ 392 F AGA AC++A+ L++A M R+ Sbjct: 380 VFGAGALACLVAIGLVLA-MGRR 401 >ref|YP_001569595.1| hypothetical protein SARI_00527 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] sp|A9MJ53.1|Y052_SALAR RecName: Full=UPF0226 membrane protein SARI_00527 gb|ABX20453.1| hypothetical protein SARI_00527 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 392 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 164/394 (41%), Positives = 247/394 (62%), Gaps = 6/394 (1%) Query: 1 MTTTTQQSNDSVASGLLPLVAI-VFTSFLCIGIPLPALPLHVNGVLGFSALTVGWVVGIQ 59 MT +Q+++ A+ LL +A VF +++ +G+PLP +PL V LG+S VG VGIQ Sbjct: 1 MTAVSQKTHTPPANFLLFRIAFAVFLTYMTVGLPLPVIPLFVRHELGYSNTMVGIAVGIQ 60 Query: 60 SFSTILSRKFSGSYCDRHGPKRAVAVGLPMAAAAGLLYLASTLIADAGASLE--VLFIGR 117 F+T+L+R ++G D++G KR+ G+ +A + AS++ +L +GR Sbjct: 61 FFATVLTRGYAGRLADQYGAKRSALQGM-LACGLAGAAWLLAALLPVSASVKFALLIVGR 119 Query: 118 LLMGPAESLFLTGTMTWGIGRVGMQRTGKVMAWQGIAMFAALGLGAPIGIAIQQRFGFAG 177 L++G ES LTGT+TWG+G VG R+GKVM+W G+A++ AL GAP+G+ I FGFA Sbjct: 120 LILGFGESQLLTGTLTWGMGLVGPARSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAA 179 Query: 178 VALTTMVLPLVGLAIATTLRGLPALGNKGGGVAMSEVLRLIWRFGMALALSAMPFAIITS 237 +A+TTM LPL+ A T+R +PA + G ++ V+ LIW+ G+ LAL + FA+I + Sbjct: 180 LAVTTMALPLLAWAFNGTVRKVPA--HAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGT 237 Query: 238 FLVLLYASNNWSGAGIAILGFSVGYVGVRLFFAHLPDRIGGAKVGAVSVAIELVGQLLLW 297 F+ L +ASN W+ AG + F +V +R+ F +PDR GG KV VS+ +E G LLLW Sbjct: 238 FISLYFASNGWAMAGFTLTAFGGAFVLMRMLFGWMPDRFGGVKVAIVSLLVETAGLLLLW 297 Query: 298 QSHDPLMAGLGTLLTGIGFSLVFPSMGVQAMARVPAHSRGLAVATFMAFIDLAAGLTGPV 357 + +A +G LTG G SL+FP++GV+ + RVP+ RG A+ + AF D++ G+TGP+ Sbjct: 298 LAPMAWIALVGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDISYGVTGPL 357 Query: 358 VGVLIGYFGYGSAFLAGAAACVLALLLMVAGMSR 391 GVL GY S FLAGA + V+ +L+ + R Sbjct: 358 AGVLATSCGYSSVFLAGALSAVVGILVTILSFRR 391 >ref|NP_461314.1| hypothetical protein STM2372 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] ref|ZP_02574156.1| protein YfcJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] ref|ZP_03215519.1| protein YfcJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] sp|Q8ZNB8.1|YFCJ_SALTY RecName: Full=UPF0226 protein yfcJ gb|AAL21273.1| putative transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gb|EDZ04550.1| protein YfcJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gb|EDZ15569.1| protein YfcJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] emb|CBG25405.1| putative transmembrane transporter [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gb|ACY89359.1| hypothetical protein STM14_2920 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] dbj|BAJ37337.1| hypothetical protein STMDT12_C23940 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gb|EFX47997.1| Transporter, putative [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gb|AEF08288.1| hypothetical protein STMUK_2402 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 392 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 165/393 (41%), Positives = 243/393 (61%), Gaps = 4/393 (1%) Query: 1 MTTTTQQSNDSVAS-GLLPLVAIVFTSFLCIGIPLPALPLHVNGVLGFSALTVGWVVGIQ 59 MT +Q++ A+ L + VF +++ +G+PLP +PL V+ LG+S VG VGIQ Sbjct: 1 MTAVSQKTTTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYSNTMVGIAVGIQ 60 Query: 60 SFSTILSRKFSGSYCDRHGPKRAVAVG-LPMAAAAGLLYLASTLIADAGASLEVLFIGRL 118 F+T+L+R ++G D++G KR+ G L A LA+ L A +L +GRL Sbjct: 61 FFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAALLPVSAPVKFALLIVGRL 120 Query: 119 LMGPAESLFLTGTMTWGIGRVGMQRTGKVMAWQGIAMFAALGLGAPIGIAIQQRFGFAGV 178 ++G ES LTGT+TWG+G VG R+GKVM+W G+A++ AL GAP+G+ I FGFA + Sbjct: 121 ILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAAL 180 Query: 179 ALTTMVLPLVGLAIATTLRGLPALGNKGGGVAMSEVLRLIWRFGMALALSAMPFAIITSF 238 A TTMVLPL+ A T+R +PA G ++ V+ LIW+ G+ LAL + FA+I +F Sbjct: 181 AGTTMVLPLLAWAFNGTVRKVPA--YTGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTF 238 Query: 239 LVLLYASNNWSGAGIAILGFSVGYVGVRLFFAHLPDRIGGAKVGAVSVAIELVGQLLLWQ 298 + L + SN W+ AG + F +V +R+ F +PDR GG KV VS+ +E G LLLW Sbjct: 239 ISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRFGGVKVAVVSLLVETAGLLLLWL 298 Query: 299 SHDPLMAGLGTLLTGIGFSLVFPSMGVQAMARVPAHSRGLAVATFMAFIDLAAGLTGPVV 358 + +A +G LTG G SL+FP++GV+ + RVPA RG A+ + AF D++ G+TGP+ Sbjct: 299 APTAWIALVGAALTGAGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLA 358 Query: 359 GVLIGYFGYGSAFLAGAAACVLALLLMVAGMSR 391 G+L +GY S FLAGA + V+ +L+ + R Sbjct: 359 GMLATSYGYPSVFLAGAISAVVGILVTILSFRR 391