BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0122.p         (171 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_999617.1| hypothetical protein Veis_4911 [Verminephrobact...    75   4e-12
ref|YP_003775227.1| threonine dehydratase [Herbaspirillum serope...    69   3e-10

>ref|YP_999617.1| hypothetical protein Veis_4911 [Verminephrobacter eiseniae EF01-2]
 gb|ABM60599.1| Threonine ammonia-lyase [Verminephrobacter eiseniae EF01-2]
          Length = 323

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 41/43 (95%)

Query: 1   MACRVPDEASLEVILNEVDEVIAVSDDEVAAAMKLYFTATHNV 43
           +ACRVPDE+SL VI ++V+E++AVSDDEVAAAMKLYFTATHNV
Sbjct: 231 VACRVPDESSLAVISDQVEEIMAVSDDEVAAAMKLYFTATHNV 273


>ref|YP_003775227.1| threonine dehydratase [Herbaspirillum seropedicae SmR1]
 gb|ADJ63319.1| threonine dehydratase protein [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 39/44 (88%)

Query: 1   MACRVPDEASLEVILNEVDEVIAVSDDEVAAAMKLYFTATHNVA 44
           +ACRVPD+ASLEV+ +EVDEV+AV+DDEV  AMKL + ATHNVA
Sbjct: 239 VACRVPDQASLEVLFSEVDEVVAVTDDEVMDAMKLAYIATHNVA 282