BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0117.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC transporte...   165   2e-39
ref|ZP_08504074.1| Sulfonate/nitrate transport system substrate-...   157   4e-37
ref|YP_001354309.1| sulfonate/nitrate transport system substrate...   147   4e-34
ref|YP_004349154.1| aliphatic sulfonates family ABC transporter,...   144   4e-33
ref|YP_001206802.1| aliphatic sulfonate ABC transporter substrat...   144   5e-33

>ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ62168.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic component protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 97/127 (76%), Gaps = 8/127 (6%)

Query: 22  FSIMTTQLQRRRLLQAIATMTSAAAAGSLALPA--FAQTGKPVQARIGYQKSSTLLTVLK 79
            S  +T   RRRLL A     +A   GS   PA  FAQ  K +  RIGYQKSSTLLT+LK
Sbjct: 1   MSKHSTDSTRRRLLHA----ATALGLGSALAPASVFAQGNKAI--RIGYQKSSTLLTILK 54

Query: 80  TNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYV 139
            NGTLEKLLAP   KISWHEF+SGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKL YV
Sbjct: 55  ANGTLEKLLAPTGAKISWHEFASGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLAYV 114

Query: 140 AQEAPSP 146
           AQE+PSP
Sbjct: 115 AQESPSP 121


>ref|ZP_08504074.1| Sulfonate/nitrate transport system substrate-binding protein
           [Methyloversatilis universalis FAM5]
 gb|EGK72622.1| Sulfonate/nitrate transport system substrate-binding protein
           [Methyloversatilis universalis FAM5]
          Length = 324

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 94/123 (76%), Gaps = 5/123 (4%)

Query: 24  IMTTQLQRRRLLQAIATMTSAAAAGSLALPAFAQTGKPVQARIGYQKSSTLLTVLKTNGT 83
           I    ++RR  L+AI     A A G     AFAQ  KP   RIGYQKSSTL+TVLKT GT
Sbjct: 2   IRPLSIRRRNALKAIVATLPALAIGR----AFAQD-KPATVRIGYQKSSTLITVLKTRGT 56

Query: 84  LEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYVAQEA 143
           LE+ LAPL VK+SWHEF+SGLPLLEALNVG VD+SADVADTVPVFA AAGA LTY+AQEA
Sbjct: 57  LEQKLAPLGVKVSWHEFASGLPLLEALNVGSVDVSADVADTVPVFALAAGANLTYLAQEA 116

Query: 144 PSP 146
           PSP
Sbjct: 117 PSP 119


>ref|YP_001354309.1| sulfonate/nitrate transport system substrate-binding protein
           [Janthinobacterium sp. Marseille]
 gb|ABR88589.1| sulfonate/nitrate transport system substrate-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 50  LALPAFAQT-GKPVQARIGYQKSSTLLTVLKTNGTLEKLLAPLNVKISWHEFSSGLPLLE 108
            ALPA AQ  G  V  RIGYQKSSTL+TVLKT GTLE+ L  L VK+SWHEF+SGLPLLE
Sbjct: 21  FALPAHAQKAGDTV--RIGYQKSSTLITVLKTRGTLEQRLGALGVKVSWHEFASGLPLLE 78

Query: 109 ALNVGGVDLSADVADTVPVFAQAAGAKLTYVAQEAPSP 146
           ALNVG +D+SADVADTVPVFAQAAGA+LTY+AQE+PSP
Sbjct: 79  ALNVGAIDVSADVADTVPVFAQAAGAQLTYIAQESPSP 116


>ref|YP_004349154.1| aliphatic sulfonates family ABC transporter, periplasmic
           ligand-binding protein [Burkholderia gladioli BSR3]
 gb|AEA63642.1| aliphatic sulfonates family ABC transporter, periplasmic
           ligand-binding protein [Burkholderia gladioli BSR3]
          Length = 329

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 92/120 (76%), Gaps = 5/120 (4%)

Query: 27  TQLQRRRLLQAIATMTSAAAAGSLALPAFAQTGKPVQARIGYQKSSTLLTVLKTNGTLEK 86
           ++L RR   +++ T+T  AAAG LA    AQ G P   RIGYQKSSTL+T+LK  GTLEK
Sbjct: 2   SRLTRRAFSRSLLTLT-LAAAGPLAR---AQ-GAPGVLRIGYQKSSTLITLLKARGTLEK 56

Query: 87  LLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYVAQEAPSP 146
            LAPLN ++ WHEF+SGLPL EALNVG VD SADVADTVPVFAQAA A+  Y+AQEAPSP
Sbjct: 57  ALAPLNTRVEWHEFASGLPLTEALNVGAVDFSADVADTVPVFAQAAQARFVYLAQEAPSP 116


>ref|YP_001206802.1| aliphatic sulfonate ABC transporter substrate-binding protein
           [Bradyrhizobium sp. ORS 278]
 emb|CAL78585.1| Putative ABC transporter, substrate-binding protein; putative
           aliphatic sulphonates transporter [Bradyrhizobium sp.
           ORS 278]
          Length = 309

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 75/82 (91%)

Query: 65  RIGYQKSSTLLTVLKTNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADT 124
           RIGYQKSSTL+ +LKTNG LEK LAPL++K+SWHEFSSGLPLLEA+N+G +D+ ADVADT
Sbjct: 21  RIGYQKSSTLIALLKTNGELEKALAPLDIKVSWHEFSSGLPLLEAINIGSIDVGADVADT 80

Query: 125 VPVFAQAAGAKLTYVAQEAPSP 146
           VPVFAQAAGAKL YVA+EA SP
Sbjct: 81  VPVFAQAAGAKLAYVAEEAASP 102