BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0113.p (543 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774081.1| transcription regulator protein [Herbaspiril... 871 0.0 ref|YP_001353651.1| hypothetical protein mma_1961 [Janthinobacte... 628 e-178 emb|CAL61593.2| Putative response regulator receiver protein [He... 621 e-176 ref|YP_001099720.1| putative response receiver protein [Herminii... 515 e-143 ref|YP_003523827.1| response regulator receiver protein [Siderox... 350 5e-94 >ref|YP_003774081.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/543 (78%), Positives = 484/543 (89%), Gaps = 1/543 (0%) Query: 1 MTLVPFSRISSLRSLIIDDMPAMRQNIRMHLGQLGITKVDQAGTPDEAIRAVQGGSTYDL 60 M+LVPFS IS+LRSLIIDDMP MRQNIRMHLGQLG+TKVDQA TPDEAIR VQ G+ YDL Sbjct: 1 MSLVPFSHISALRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGN-YDL 59 Query: 61 IVCDYNLNKETNGQQLLEFFRTQHMLSPTTMFIMVTAESGYNLVASAAEFQPDAYMLKPL 120 I+CDYNLNKE+NGQQLLEFFRTQ+MLSPT MFIMVTAESGYNLVASAAEFQPDAYMLKPL Sbjct: 60 IICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPL 119 Query: 121 TASKLADRIDRLLEKQNALLPINEKLKRKDQAGAIVECDNVVKVAPKWIVDILKIKGSLL 180 TAS++A+R+DRLLEKQ+A+LP+ EK+KRKD +GAI ECDNV+K APKWIV+I+K KG+LL Sbjct: 120 TASRIAERVDRLLEKQHAMLPVTEKMKRKDISGAIAECDNVLKAAPKWIVEIMKTKGTLL 179 Query: 181 VELRRIEEARAVYAQALEMRDDQVWAKVGMARCNIVAGQYDDAKVLVQAVLAQNSQYIEA 240 +E RR++EAR VY QAL MRDD VWAK+G+ARCNIVAGQ DDA+ +V+ VLAQN Q+I A Sbjct: 180 IEQRRVDEAREVYKQALGMRDDLVWAKIGLARCNIVAGQMDDARAIVEDVLAQNKQFIAA 239 Query: 241 YDLLAQIEDAQGNQQQALDALARSSEIIPSARRSRLVGDAAYRVGDLDQAKEAFDKVLKH 300 YDLLAQI++AQGNQ+ AL+AL RSSEIIPSARRSRLVGD AYR G LDQA+EA+DKVLKH Sbjct: 240 YDLLAQIDEAQGNQEGALEALTRSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKH 299 Query: 301 TKGSLTAQPGDLLTLAQVHVDTGDGDAALALLANAPKRYAESKMFISTQSAVAAQAYVQL 360 TKGSLTAQP DLL+LAQVH+D+GD DAAL LL +AP+RY ESK+FIS Q+AV AQAYVQL Sbjct: 300 TKGSLTAQPTDLLSLAQVHIDSGDADAALRLLESAPRRYEESKLFISAQAAVQAQAYVQL 359 Query: 361 GDMISAEMAFEAARNAAEGTPSEMGTLALAKAAFSVGRDEEGAQLISQAVKSDHENKTLL 420 GD ISA+ AFE AR AA S+M TLALAKAAFS+GRDEEG++LI+ AVKSDHENKTLL Sbjct: 360 GDTISAQQAFETARQAAGEETSDMATLALAKAAFSMGRDEEGSKLIADAVKSDHENKTLL 419 Query: 421 TLARKVLADCGKEGMTDELVDGAVKQCMGIIAEANTLMRSAKPDESLAKLEEALHSMPEN 480 LARKVLAD G+ + DELVDGAVK CM +IAEAN LMRSAKPDESLAKLEEAL SMPEN Sbjct: 420 MLARKVLADTGRANLADELVDGAVKHCMSVIAEANALMRSAKPDESLAKLEEALASMPEN 479 Query: 481 TGVLMAAAQLHLLWMSQRGINQDYVKRVNRYLNTLDRLIPGNDRVSKMHKFLRDAVAKAA 540 TGVL+A+AQLHLLWMSQRG N++YVKRV RYL TLDRLIPGNDRV+KMHKFLRD ++K A Sbjct: 480 TGVLLASAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLSKVA 539 Query: 541 QKS 543 KS Sbjct: 540 PKS 542 >ref|YP_001353651.1| hypothetical protein mma_1961 [Janthinobacterium sp. Marseille] gb|ABR91293.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 542 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 308/540 (57%), Positives = 422/540 (78%), Gaps = 1/540 (0%) Query: 1 MTLVPFSRISSLRSLIIDDMPAMRQNIRMHLGQLGITKVDQAGTPDEAIRAVQGGSTYDL 60 M + SR++ LR+L++DDMP MRQNIR LGQLGI +VDQ+ TP++AI+ ++ + YD+ Sbjct: 1 MATILNSRLAKLRALVVDDMPTMRQNIRTQLGQLGIEQVDQSATPNDAIKRIRN-TNYDV 59 Query: 61 IVCDYNLNKETNGQQLLEFFRTQHMLSPTTMFIMVTAESGYNLVASAAEFQPDAYMLKPL 120 IVCDYNLNKETNGQQ+LE+ R+Q +LSPT MF MVTAES Y+ VASAAEFQPDAYM+KPL Sbjct: 60 IVCDYNLNKETNGQQVLEYLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPL 119 Query: 121 TASKLADRIDRLLEKQNALLPINEKLKRKDQAGAIVECDNVVKVAPKWIVDILKIKGSLL 180 T K+ADR++RLL++Q AL PI ++L+ KD +GAI ECD V+ PKWIVDILKIKGS Sbjct: 120 TGGKIADRLERLLDRQQALKPITDRLQMKDLSGAITECDTVLVAEPKWIVDILKIKGSSA 179 Query: 181 VELRRIEEARAVYAQALEMRDDQVWAKVGMARCNIVAGQYDDAKVLVQAVLAQNSQYIEA 240 +EL I +ARA Y +AL +R D VWAK+G+ARC+ AG+ D+AK V VL N+Q+++A Sbjct: 180 LELGNINDARATYQKALSLRSDLVWAKLGLARCDQAAGRLDEAKKTVSEVLEANAQFVDA 239 Query: 241 YDLLAQIEDAQGNQQQALDALARSSEIIPSARRSRLVGDAAYRVGDLDQAKEAFDKVLKH 300 YDLLAQI +AQGN++ LDA +S ++IPSARRSRL+GDAAYRVG+L+QA++AF+K L H Sbjct: 240 YDLLAQIAEAQGNEEAVLDAFNKSYDVIPSARRSRLMGDAAYRVGNLEQARQAFNKALTH 299 Query: 301 TKGSLTAQPGDLLTLAQVHVDTGDGDAALALLANAPKRYAESKMFISTQSAVAAQAYVQL 360 T+GSLTAQ D L+LAQV VD GD AL +L+ A + + + F + Q+ +AAQA+ +L Sbjct: 300 TRGSLTAQASDALSLAQVQVDIGDAADALNVLSAAAQDHQDDPYFAARQATIAAQAFARL 359 Query: 361 GDMISAEMAFEAARNAAEGTPSEMGTLALAKAAFSVGRDEEGAQLISQAVKSDHENKTLL 420 GDM SA+ AF +A+ A+G +++ TL LAKAAF VG +EEGA+++++A+K+DHEN L+ Sbjct: 360 GDMNSAQAAFASAKELADGIRADIHTLTLAKAAFCVGLEEEGARIVAKAIKADHENIRLV 419 Query: 421 TLARKVLADCGKEGMTDELVDGAVKQCMGIIAEANTLMRSAKPDESLAKLEEALHSMPEN 480 AR+VL D G E + +++V+ ++ + I+ +A LMR+ + DESLAKLEEAL + PEN Sbjct: 420 AFARRVLQDTGNEALIEKVVEESISEGALIVEQATQLMRAGQFDESLAKLEEALTATPEN 479 Query: 481 TGVLMAAAQLHLLWMSQRGINQDYVKRVNRYLNTLDRLIPGNDRVSKMHKFLRDAVAKAA 540 TGVL+AAAQLHLLWMSQ+G++++YV+RVN YL LD L+P ++RV+KM++FLR+ + KA+ Sbjct: 480 TGVLLAAAQLHLLWMSQKGLDRNYVERVNAYLAQLDVLMPNSERVAKMYRFLRETLVKAS 539 >emb|CAL61593.2| Putative response regulator receiver protein [Herminiimonas arsenicoxydans] Length = 542 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 315/543 (58%), Positives = 422/543 (77%), Gaps = 1/543 (0%) Query: 1 MTLVPFSRISSLRSLIIDDMPAMRQNIRMHLGQLGITKVDQAGTPDEAIRAVQGGSTYDL 60 M + SR++ LR+L++DDMPAMRQNIR LGQLGI +VDQAGTP++AI+ ++ ++YD+ Sbjct: 1 MATILNSRLAKLRALVVDDMPAMRQNIRSQLGQLGIEQVDQAGTPNDAIKYIRS-TSYDV 59 Query: 61 IVCDYNLNKETNGQQLLEFFRTQHMLSPTTMFIMVTAESGYNLVASAAEFQPDAYMLKPL 120 I+CDYNLNKETNGQQ+LEF R+Q +LSPT MF MVTAES Y+ VASAAEFQPDAYM+KPL Sbjct: 60 IICDYNLNKETNGQQMLEFLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPL 119 Query: 121 TASKLADRIDRLLEKQNALLPINEKLKRKDQAGAIVECDNVVKVAPKWIVDILKIKGSLL 180 T K+ADRI+RLL+++ AL PI ++L++KD AGAI ECD V+K+ PKWIVDILK K Sbjct: 120 TGGKIADRIERLLDRKQALKPITDRLQKKDLAGAIAECDRVLKIEPKWIVDILKTKAGAA 179 Query: 181 VELRRIEEARAVYAQALEMRDDQVWAKVGMARCNIVAGQYDDAKVLVQAVLAQNSQYIEA 240 +EL + +EAR Y QAL +R D VWAK+G+ARC+ G+ ++AK++VQ VL +N+QY++A Sbjct: 180 LELGQNDEARRSYLQALGLRQDLVWAKLGLARCDQAEGRLEEAKIIVQGVLEKNAQYVDA 239 Query: 241 YDLLAQIEDAQGNQQQALDALARSSEIIPSARRSRLVGDAAYRVGDLDQAKEAFDKVLKH 300 YDLLAQI +++G QQ L+AL +S +IPSARRSR+VGDAAYRVGDL+QA+ A+DK L H Sbjct: 240 YDLLAQIAESRGEDQQVLEALNKSYNVIPSARRSRMVGDAAYRVGDLEQARSAYDKALNH 299 Query: 301 TKGSLTAQPGDLLTLAQVHVDTGDGDAALALLANAPKRYAESKMFISTQSAVAAQAYVQL 360 T+GSLTAQ D L+LAQVHVD G AL +L+ A + + E F S Q+ +AAQA+ L Sbjct: 300 TRGSLTAQASDALSLAQVHVDIGQAGNALEILSVAAQDHHEDPGFCSRQAIIAAQAFAAL 359 Query: 361 GDMISAEMAFEAARNAAEGTPSEMGTLALAKAAFSVGRDEEGAQLISQAVKSDHENKTLL 420 GDM S + AFE+A+ A ++ TL LAKAAF +G EEGA+++++A+KSDHEN L+ Sbjct: 360 GDMASGKAAFESAKELAADIRADTNTLTLAKAAFCLGMHEEGARIMAKAIKSDHENARLV 419 Query: 421 TLARKVLADCGKEGMTDELVDGAVKQCMGIIAEANTLMRSAKPDESLAKLEEALHSMPEN 480 LARKVL D G E + +++VD A+ I+ EA LMR+ + DESLAKLEEAL + P+N Sbjct: 420 ALARKVLKDTGNETLVEKIVDDAISAGALIVDEATRLMRNGQFDESLAKLEEALDATPDN 479 Query: 481 TGVLMAAAQLHLLWMSQRGINQDYVKRVNRYLNTLDRLIPGNDRVSKMHKFLRDAVAKAA 540 TGVL+AAAQLHLLWMSQ+G+++ YV+RVN YL LD L+P ++RV+KM++FLR+ + K A Sbjct: 480 TGVLLAAAQLHLLWMSQKGLDRSYVRRVNGYLAQLDGLMPNSERVAKMYRFLRETLVKVA 539 Query: 541 QKS 543 +++ Sbjct: 540 KEA 542 >ref|YP_001099720.1| putative response receiver protein [Herminiimonas arsenicoxydans] Length = 468 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 267/468 (57%), Positives = 358/468 (76%) Query: 76 LLEFFRTQHMLSPTTMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASKLADRIDRLLEK 135 +LEF R+Q +LSPT MF MVTAES Y+ VASAAEFQPDAYM+KPLT K+ADRI+RLL++ Sbjct: 1 MLEFLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPLTGGKIADRIERLLDR 60 Query: 136 QNALLPINEKLKRKDQAGAIVECDNVVKVAPKWIVDILKIKGSLLVELRRIEEARAVYAQ 195 + AL PI ++L++KD AGAI ECD V+K+ PKWIVDILK K +EL + +EAR Y Q Sbjct: 61 KQALKPITDRLQKKDLAGAIAECDRVLKIEPKWIVDILKTKAGAALELGQNDEARRSYLQ 120 Query: 196 ALEMRDDQVWAKVGMARCNIVAGQYDDAKVLVQAVLAQNSQYIEAYDLLAQIEDAQGNQQ 255 AL +R D VWAK+G+ARC+ G+ ++AK++VQ VL +N+QY++AYDLLAQI +++G Q Sbjct: 121 ALGLRQDLVWAKLGLARCDQAEGRLEEAKIIVQGVLEKNAQYVDAYDLLAQIAESRGEDQ 180 Query: 256 QALDALARSSEIIPSARRSRLVGDAAYRVGDLDQAKEAFDKVLKHTKGSLTAQPGDLLTL 315 Q L+AL +S +IPSARRSR+VGDAAYRVGDL+QA+ A+DK L HT+GSLTAQ D L+L Sbjct: 181 QVLEALNKSYNVIPSARRSRMVGDAAYRVGDLEQARSAYDKALNHTRGSLTAQASDALSL 240 Query: 316 AQVHVDTGDGDAALALLANAPKRYAESKMFISTQSAVAAQAYVQLGDMISAEMAFEAARN 375 AQVHVD G AL +L+ A + + E F S Q+ +AAQA+ LGDM S + AFE+A+ Sbjct: 241 AQVHVDIGQAGNALEILSVAAQDHHEDPGFCSRQAIIAAQAFAALGDMASGKAAFESAKE 300 Query: 376 AAEGTPSEMGTLALAKAAFSVGRDEEGAQLISQAVKSDHENKTLLTLARKVLADCGKEGM 435 A ++ TL LAKAAF +G EEGA+++++A+KSDHEN L+ LARKVL D G E + Sbjct: 301 LAADIRADTNTLTLAKAAFCLGMHEEGARIMAKAIKSDHENARLVALARKVLKDTGNETL 360 Query: 436 TDELVDGAVKQCMGIIAEANTLMRSAKPDESLAKLEEALHSMPENTGVLMAAAQLHLLWM 495 +++VD A+ I+ EA LMR+ + DESLAKLEEAL + P+NTGVL+AAAQLHLLWM Sbjct: 361 VEKIVDDAISAGALIVDEATRLMRNGQFDESLAKLEEALDATPDNTGVLLAAAQLHLLWM 420 Query: 496 SQRGINQDYVKRVNRYLNTLDRLIPGNDRVSKMHKFLRDAVAKAAQKS 543 SQ+G+++ YV+RVN YL LD L+P ++RV+KM++FLR+ + K A+++ Sbjct: 421 SQKGLDRSYVRRVNGYLAQLDGLMPNSERVAKMYRFLRETLVKVAKEA 468 >ref|YP_003523827.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] gb|ADE11440.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] Length = 559 Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 188/531 (35%), Positives = 311/531 (58%), Gaps = 8/531 (1%) Query: 6 FSRISSLRSLIIDDMPAMRQNIRMHLGQLGITKVDQAGTPDEAIRAVQGGSTYDLIVCDY 65 + R +L +L+IDD+ AMR +R L + + + EA+ ++ + YDLI+CDY Sbjct: 25 YIRFDTLSALVIDDIGAMRHALRSQLQWMEMNSIKCVADAQEALGQIEN-NRYDLILCDY 83 Query: 66 NLNKETNGQQLLEFFRTQHMLSPTTMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASKL 125 NLNK T+GQ LE+ R +H+LS T+F+MVTAE+ Y VA+AAEF PD Y+LKP KL Sbjct: 84 NLNKATSGQHFLEYLRHEHLLSAKTIFVMVTAEAEYAFVANAAEFAPDDYILKPCPEKKL 143 Query: 126 ADRIDRLLEKQNALLPINEKLKRKDQAGAIVECDNVVKVAP--KWIVDILKIKGSLLVEL 183 R++RL +++N LLP + K+ + ECD ++ + +W++ LK+K L+ L Sbjct: 144 RARLERLFDRRNFLLPALTAMDDKNYLLVVSECDRLMALVTNERWLMAALKLKAEALLAL 203 Query: 184 RRIEEARAVYAQALEMRDDQVWAKVGMARCNIVAGQYDDAKVLVQAVLAQNSQYIEAYDL 243 + Y QAL MRD+ W K+G+AR ++ + D A+ + + ++A N Y+ AY+L Sbjct: 204 NDTTDLLKTYEQALAMRDNVPWVKIGIARARMLLNEVDAAEEMAKQIVADNPSYVAAYEL 263 Query: 244 LAQIEDAQGNQQQALDALARSSEIIPSARRSRLVGDAAYRVGDLDQAKEAFDKVLKHTKG 303 LA+I Q +++ A + +S++I+P+A+R R ++A+ +G LD+AK+ + ++ G Sbjct: 264 LAEIRRMQKDEEGAYQLMEQSAKILPTAKRFRSNAESAFLLGKLDEAKKYSESAIRLASG 323 Query: 304 SLTAQPGDLLTLAQVHVDTGDGDAALALLANAPKRYAESKMFISTQSAVAAQAYVQLGDM 363 S+T +P D L+LAQ+ D GD A+ L + +++ E F +++A+ AQAY GD Sbjct: 324 SITERPDDYLSLAQIQTDLGDPQGAIHTLEKSARKFEEKGSFGISKNAILAQAYFDAGDK 383 Query: 364 ISAEMAFEAARN--AAEGTPSEMGTLALAKAAFSVGRDEEGAQLISQAVKSDH-ENKTLL 420 +A+ E ++ AE + S M + L KAAF G G ++++QAV+S E + + Sbjct: 384 AAAKRLLERSQRLLTAESSSSAMNS--LGKAAFKTGDSVLGLKMLTQAVQSSGLERERIA 441 Query: 421 TLARKVLADCGKEGMTDELVDGAVKQCMGIIAEANTLMRSAKPDESLAKLEEALHSMPEN 480 K + D G+ DE++D ++ + ++ EA M A+ D + K+ +AL +N Sbjct: 442 RHVTKSMIDTGQHDKVDEVIDAGQRRVLALVEEARKAMHVAQFDAAYRKVLDALAIQSDN 501 Query: 481 TGVLMAAAQLHLLWMSQRGINQDYVKRVNRYLNTLDRLIPGNDRVSKMHKF 531 L AAAQLHLLW+ Q G++ D +R YL LD+L+P N++V ++F Sbjct: 502 IEALFAAAQLHLLWLKQGGMDADVQERAKSYLAILDKLVPHNEKVMSFYRF 552