BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0109.p         (204 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774085.1| succinyl-CoA synthetase subunit alpha [Herba...   380   e-104
ref|YP_004754447.1| succinyl-CoA ligase [ADP-forming] subunit al...   380   e-104
ref|ZP_08274407.1| Succinyl-CoA ligase (ADP-forming) alpha chain...   373   e-102
emb|CBJ39096.1| Succinate-CoA ligase (GDP-forming), alpha subuni...   370   e-100
ref|YP_001898062.1| succinyl-CoA synthetase subunit alpha [Ralst...   369   e-100

>ref|YP_003774085.1| succinyl-CoA synthetase subunit alpha [Herbaspirillum seropedicae
           SmR1]
 emb|CAM32611.1| Succinyl-CoA synthetase alpha chain protein [Herbaspirillum
           seropedicae]
 gb|ADJ62177.1| succinyl-CoA synthetase alpha chain protein [Herbaspirillum
           seropedicae SmR1]
          Length = 293

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/200 (95%), Positives = 197/200 (98%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCREYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60
           MSILINKDTKVITQGITGKTGQFHTRMCR+YANGKNAFVAGVNPKKAGEDFEGIPI+ANV
Sbjct: 1   MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60

Query: 61  SEAKKATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLELKNRMAKSGS 120
           +EAK ATGA VSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDML LK+RMAK+GS
Sbjct: 61  TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA
Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180

Query: 181 VGIGGDPINGLKHIDIMKAF 200
           VGIGGDPINGLKHID+MKAF
Sbjct: 181 VGIGGDPINGLKHIDVMKAF 200


>ref|YP_004754447.1| succinyl-CoA ligase [ADP-forming] subunit alpha [Collimonas
           fungivorans Ter331]
 gb|AEK63624.1| Succinyl-CoA ligase [ADP-forming] alpha chain [Collimonas
           fungivorans Ter331]
          Length = 293

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/200 (96%), Positives = 196/200 (98%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCREYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60
           MSILINKDTKV+TQGITGKTGQFHTR CR+YANGKNAFVAGVNPKKAGEDFEGIPIFANV
Sbjct: 1   MSILINKDTKVVTQGITGKTGQFHTRGCRDYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60

Query: 61  SEAKKATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLELKNRMAKSGS 120
           SEAK ATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDML LK+RMAK+GS
Sbjct: 61  SEAKAATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA
Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180

Query: 181 VGIGGDPINGLKHIDIMKAF 200
           VGIGGDPINGLKHIDIMK F
Sbjct: 181 VGIGGDPINGLKHIDIMKMF 200


>ref|ZP_08274407.1| Succinyl-CoA ligase (ADP-forming) alpha chain [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF32127.1| Succinyl-CoA ligase (ADP-forming) alpha chain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 293

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/200 (93%), Positives = 192/200 (96%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCREYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60
           MSILINKDTKV+TQGITGKTGQFHTRMCREYANG N FVAGVNPKKAGEDFEGIPIFANV
Sbjct: 1   MSILINKDTKVVTQGITGKTGQFHTRMCREYANGANCFVAGVNPKKAGEDFEGIPIFANV 60

Query: 61  SEAKKATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLELKNRMAKSGS 120
           +EAK  TG NVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDM+ LK+RMAKSGS
Sbjct: 61  AEAKAKTGVNVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMMALKDRMAKSGS 120

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIHK GRIGVVSRSGTLTYEAVGQLTALGLGQSSA
Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKAGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180

Query: 181 VGIGGDPINGLKHIDIMKAF 200
           VGIGGDPINGLKHIDIM+ F
Sbjct: 181 VGIGGDPINGLKHIDIMRMF 200


>emb|CBJ39096.1| Succinate-CoA ligase (GDP-forming), alpha subunit, NAD(P)-binding
           [Ralstonia solanacearum CMR15]
          Length = 293

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 190/200 (95%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCREYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60
           MSILINKDTKVITQGITGKTGQFHTR CR+YANGKNAFVAGVNPKKAGEDFEGIPI+A+V
Sbjct: 1   MSILINKDTKVITQGITGKTGQFHTRGCRDYANGKNAFVAGVNPKKAGEDFEGIPIYASV 60

Query: 61  SEAKKATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLELKNRMAKSGS 120
            +AK  TGA VSVIYVPPAGAA AIWEAVEAELDL +CITEGIPVRDM+ +K++M K+GS
Sbjct: 61  KDAKAQTGATVSVIYVPPAGAADAIWEAVEAELDLVVCITEGIPVRDMMMVKDKMRKAGS 120

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIH+KGRIGVVSRSGTLTYEAVGQLTALGLGQSSA
Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180

Query: 181 VGIGGDPINGLKHIDIMKAF 200
           VGIGGDPINGLKHID+MK F
Sbjct: 181 VGIGGDPINGLKHIDVMKMF 200


>ref|YP_001898062.1| succinyl-CoA synthetase subunit alpha [Ralstonia pickettii 12J]
 gb|ACD25630.1| succinyl-CoA synthetase, alpha subunit [Ralstonia pickettii 12J]
          Length = 293

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 189/200 (94%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCREYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60
           MSILINKDTKVITQGITGKTGQFHTR CR+YANGKNAFVAGVNPKKAGEDFEGIPI+A V
Sbjct: 1   MSILINKDTKVITQGITGKTGQFHTRGCRDYANGKNAFVAGVNPKKAGEDFEGIPIYATV 60

Query: 61  SEAKKATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLELKNRMAKSGS 120
            +AK  TGA VSVIYVPPAGAA AIWEAVEAELDL +CITEGIPVRDM+ +K++M K+GS
Sbjct: 61  KDAKAQTGATVSVIYVPPAGAADAIWEAVEAELDLVVCITEGIPVRDMMMVKDKMRKAGS 120

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIH+KGRIGVVSRSGTLTYEAVGQLTALGLGQSSA
Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180

Query: 181 VGIGGDPINGLKHIDIMKAF 200
           VGIGGDPINGLKHID+MK F
Sbjct: 181 VGIGGDPINGLKHIDVMKMF 200