BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0106.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774087.1| Type IV pilin A protein [Herbaspirillum sero... 113 8e-24 ref|ZP_03719778.1| hypothetical protein NEIFLAOT_01627 [Neisseri... 105 2e-21 ref|ZP_06158399.1| fimbrial protein EcpC [Neisseria cinerea ATCC... 105 2e-21 ref|YP_370211.1| general secretion pathway protein H [Burkholder... 103 9e-21 ref|YP_774583.1| general secretion pathway protein H [Burkholder... 103 1e-20 >ref|YP_003774087.1| Type IV pilin A protein [Herbaspirillum seropedicae SmR1] gb|ADJ62179.1| Type IV pilin A protein [Herbaspirillum seropedicae SmR1] Length = 168 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 96/166 (57%), Gaps = 19/166 (11%) Query: 8 RYSPTGFTLIELMIVIAIVGVLAMVAIPQYRDYLVRTKVAEGLNLATPAKMAVSETIASK 67 R S GFTL+ELM+ +AIVG+LAM+ QY+DY+ R +V+EG NLA P K+AV+E I+S Sbjct: 7 RSSQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVTEQISSN 66 Query: 68 GSADFEQAATGY-TFTPSKEITSVSDIKIEK---GGAITITFGDIGGEAKGKTLKLVPSA 123 + F A G FTP+ +T +S ++ GG ITIT+ GE G TL L P+ Sbjct: 67 -NGVFTVAQLGLPAFTPTANVTGISVSPMQPRGVGGVITITYSAQVGE--GGTLTLTPTI 123 Query: 124 ANPSAITWLCQTA-------PAKAAADSPL----LPAKYAPEVCRG 158 A+ I W C A P A A++ LPAKYAP CRG Sbjct: 124 AS-GTIQWQCAAAGVTQAPTPQGATANTGFVAGTLPAKYAPANCRG 168 >ref|ZP_03719778.1| hypothetical protein NEIFLAOT_01627 [Neisseria flavescens NRL30031/H210] gb|EEG33288.1| hypothetical protein NEIFLAOT_01627 [Neisseria flavescens NRL30031/H210] Length = 156 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 87/148 (58%), Gaps = 14/148 (9%) Query: 13 GFTLIELMIVIAIVGVLAMVAIPQYRDYLVRTKVAEGLNLATPAKMAVSETIASKGSAD- 71 GFTLIELMIVIAI+G+LA+VA+P Y+DY VR K++EGL LA PAK+AV+ET A+ G + Sbjct: 7 GFTLIELMIVIAILGILAVVALPAYQDYTVRAKISEGLGLAEPAKLAVAETSAALGGLNK 66 Query: 72 FEQAATGYTFTPSKEITSVSDIKIEKG-GAITITFGDIGGEAKGKTLKLVPSAANP-SAI 129 TGYTF P+ VS I I G G IT+T D G L P+ A+P I Sbjct: 67 ITTTNTGYTF-PTGGTKYVSSIAIAAGSGEITVTTKDTGSTTD-PVFTLTPNQAHPEDPI 124 Query: 130 TWLCQTAPAKAAADSPLLPAKYAPEVCR 157 TW C K+ P K+ P CR Sbjct: 125 TWEC-----KSKGGQP----KHLPANCR 143 >ref|ZP_06158399.1| fimbrial protein EcpC [Neisseria cinerea ATCC 14685] gb|EEZ70774.1| fimbrial protein EcpC [Neisseria cinerea ATCC 14685] Length = 206 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 86/147 (58%), Gaps = 15/147 (10%) Query: 13 GFTLIELMIVIAIVGVLAMVAIPQYRDYLVRTKVAEGLNLATPAKMAVSETIASKGS-AD 71 GFTLIELMIVIAI+G+LA++A P Y+DY +R KV+EGLNLA PAK+AV+ET AS G Sbjct: 60 GFTLIELMIVIAILGILAVIAFPAYQDYTIRAKVSEGLNLAAPAKLAVAETAASLGGLTK 119 Query: 72 FEQAATGYTFTPSKEITSVSDIKIEKGGAITITFGDIGGEAKGKTLKLVPSAAN-PSAIT 130 TGY F+ +K ++S++ I GG ITIT D G + + L P+ I Sbjct: 120 VTTDNTGYKFSATKYVSSIA---IANGGQITITTKDTGAD-ENPVFDLKPTQTKLEDPIE 175 Query: 131 WLCQTAPAKAAADSPLLPAKYAPEVCR 157 W C + SP K+ P CR Sbjct: 176 WACTYSKG-----SP----KHVPANCR 193 >ref|YP_370211.1| general secretion pathway protein H [Burkholderia sp. 383] gb|ABB09567.1| general secretion pathway protein H [Burkholderia sp. 383] Length = 198 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 96/183 (52%), Gaps = 36/183 (19%) Query: 4 KRSARYSPTGFTLIELMIVIAIVGVLAMVAIPQYRDYLVRTKVAEGLNLATPAKMAVSET 63 + S R+ P GFTLIELMIV+AIVGV+A AIP Y+DYL R++V EGL LA+ A++AV++ Sbjct: 22 RPSPRWRPAGFTLIELMIVLAIVGVIAAYAIPAYQDYLARSRVGEGLALASSARLAVADN 81 Query: 64 IASKGSADFEQAATGYTFTPSKEITSVSDIKIE-KGGAITITFGDIGGEAKGKTLKLVPS 122 +S S D GY +P +V + I+ + G IT+ F A TL LVPS Sbjct: 82 ASSGASLD-----GGY--SPPAATRNVESVAIDGETGQITVAFTTRVTAAGANTLVLVPS 134 Query: 123 AANPS-----------------AITWLCQTA-------PAKAA----ADSPLLPAKYAPE 154 A + + AI W C A PA A D+ LPAKYAP Sbjct: 135 APDKADAPTARVPLKKGAMQAGAIAWECFAAGKDASSLPAPGAGPLPGDAATLPAKYAPA 194 Query: 155 VCR 157 CR Sbjct: 195 ECR 197 >ref|YP_774583.1| general secretion pathway protein H [Burkholderia ambifaria AMMD] ref|ZP_02888661.1| general secretion pathway protein H [Burkholderia ambifaria IOP40-10] ref|YP_001809260.1| general secretion pathway protein H [Burkholderia ambifaria MC40-6] gb|ABI88249.1| general secretion pathway protein H [Burkholderia ambifaria AMMD] gb|EDT05698.1| general secretion pathway protein H [Burkholderia ambifaria IOP40-10] gb|ACB65044.1| general secretion pathway protein H [Burkholderia ambifaria MC40-6] Length = 198 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 94/179 (52%), Gaps = 36/179 (20%) Query: 8 RYSPTGFTLIELMIVIAIVGVLAMVAIPQYRDYLVRTKVAEGLNLATPAKMAVSETIASK 67 R+ P GFTLIELMIV+AIVGV+A AIP Y+DYL R++V EGL LA+ A++AV++ AS Sbjct: 26 RWRPAGFTLIELMIVLAIVGVIAAYAIPAYQDYLARSRVGEGLALASSARLAVADNAASG 85 Query: 68 GSADFEQAATGYTFTPSKEITSVSDIKIEKG-GAITITFGDIGGEAKGKTLKLVPSAANP 126 D GY +P +V ++I+ G IT+ F A TL LVPSA + Sbjct: 86 AGLD-----GGY--SPPVATRNVESVRIDADTGQITVAFTTRVAAAGANTLVLVPSAPDK 138 Query: 127 S-----------------AITWLCQTA-------PAKAA----ADSPLLPAKYAPEVCR 157 + AI W C A PA A A++ LPAKYAP CR Sbjct: 139 ADTPTARVPLKKGAMQAGAIAWECFAAGKAASSLPAPGAGPLPAEAATLPAKYAPAECR 197