BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0090.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774102.1| phosphoribosylaminoimidazole carboxylase ATP... 315 4e-84 ref|YP_001100849.1| phosphoribosylaminoimidazole carboxylase CO(... 286 3e-75 ref|ZP_08274952.1| Phosphoribosylaminoimidazole carboxylase ATPa... 276 2e-72 ref|YP_004754430.1| phosphoribosylaminoimidazole carboxylase ATP... 265 5e-69 ref|YP_001354533.1| phosphoribosylaminoimidazole carboxylase ATP... 230 2e-58 >ref|YP_003774102.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62194.1| phosphoribosylaminoimidazole carboxylase ATPase subunit protein [Herbaspirillum seropedicae SmR1] Length = 401 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 155/211 (73%), Positives = 175/211 (82%), Gaps = 1/211 (0%) Query: 3 QKQSPLNTVSIPTTTPATWLGVMGGGQLGRMFAHAAQAMGFKVAVLEQEEDCPAGQVADR 62 Q SPL ++P+TTPATWLGVMGGGQLGRMFAHAAQ+MGFKVAVLE + DCPAGQVADR Sbjct: 4 QSASPLRP-AVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADR 62 Query: 63 LIRTSYTDARGLEELASLCGAVTTEFENVSADSLAALAEKTYVAPSAAGVSIAQDRIAEK 122 LI Y D L EL +LC A+TTEFENVSA SLA LA +T+VAP+A+GVSIAQDR AEK Sbjct: 63 LINAGYDDGPALAELGALCAAITTEFENVSAKSLATLAAQTFVAPAASGVSIAQDRTAEK 122 Query: 123 RFFVDCGASSDVQPAPHKVIASEADIDAIPADLLPGILKTVRMGYDGKGQVRVHSIADVK 182 FF +CG+ S V PAPH VI SEADI+ + A+LLPGILKT RMGYDGKGQVRV S+ +V+ Sbjct: 123 AFFTECGSQSGVLPAPHLVINSEADIEGLDANLLPGILKTARMGYDGKGQVRVRSVEEVR 182 Query: 183 AAFAEMKGVTCLLEKMLPLAYEVSVLVARGR 213 AAFA M GVTC+LEKMLPLAYEVSVLVARG Sbjct: 183 AAFASMGGVTCVLEKMLPLAYEVSVLVARGH 213 >ref|YP_001100849.1| phosphoribosylaminoimidazole carboxylase CO(2)-fixing subunit [Herminiimonas arsenicoxydans] emb|CAL62728.1| Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC) [Herminiimonas arsenicoxydans] Length = 397 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/213 (69%), Positives = 165/213 (77%), Gaps = 6/213 (2%) Query: 1 MSQKQ-SPLNTVSIPTTTPATWLGVMGGGQLGRMFAHAAQAMGFKVAVLEQEEDCPAGQV 59 MS+ + SPLN + TWLGVMGGGQLGRMFAHAAQ MGFKVAVLE DCPAG Sbjct: 1 MSKNELSPLNP-----SAAGTWLGVMGGGQLGRMFAHAAQQMGFKVAVLEPAFDCPAGHA 55 Query: 60 ADRLIRTSYTDARGLEELASLCGAVTTEFENVSADSLAALAEKTYVAPSAAGVSIAQDRI 119 AD+L YTD L +LAS C AVTTEFENVSA SLA LAE T+VAPSA+ VSIAQDR+ Sbjct: 56 ADQLHSADYTDVEALTKLASQCAAVTTEFENVSAKSLAFLAESTFVAPSASCVSIAQDRM 115 Query: 120 AEKRFFVDCGASSDVQPAPHKVIASEADIDAIPADLLPGILKTVRMGYDGKGQVRVHSIA 179 AEKRFF++C +S V PA HK I S ADIDA+P DLLPGILKTVRMGYDGKGQVRV + A Sbjct: 116 AEKRFFIECAITSGVFPASHKEINSAADIDAVPDDLLPGILKTVRMGYDGKGQVRVKTRA 175 Query: 180 DVKAAFAEMKGVTCLLEKMLPLAYEVSVLVARG 212 ++ AA+ M GV C+LEKMLPLAYE+SVL ARG Sbjct: 176 ELHAAYGGMDGVACVLEKMLPLAYEISVLAARG 208 >ref|ZP_08274952.1| Phosphoribosylaminoimidazole carboxylase ATPase subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31577.1| Phosphoribosylaminoimidazole carboxylase ATPase subunit [Oxalobacteraceae bacterium IMCC9480] Length = 397 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/213 (65%), Positives = 163/213 (76%), Gaps = 4/213 (1%) Query: 1 MSQKQSPLNTVSIPTTTPATWLGVMGGGQLGRMFAHAAQAMGFKVAVLEQEEDCPAGQVA 60 MS Q L IP+ TPATWLGVMGGGQLGRMF HAAQAMG+KVAVLE +D PA A Sbjct: 1 MSDVQPAL----IPSATPATWLGVMGGGQLGRMFVHAAQAMGYKVAVLEPVDDSPAAHAA 56 Query: 61 DRLIRTSYTDARGLEELASLCGAVTTEFENVSADSLAALAEKTYVAPSAAGVSIAQDRIA 120 DR + Y DA L+ELA C AVTTEFENV A SLA LA+ V+PSAA VS+AQDR+ Sbjct: 57 DRHLVARYDDAGALQELAVQCAAVTTEFENVPAASLALLAQHASVSPSAACVSVAQDRMV 116 Query: 121 EKRFFVDCGASSDVQPAPHKVIASEADIDAIPADLLPGILKTVRMGYDGKGQVRVHSIAD 180 EKRFF+DC A S V PAPH++IA+++DID + LLPGILKTVR+GYDGKGQ RV ++A+ Sbjct: 117 EKRFFIDCAARSGVLPAPHQLIAADSDIDTVTDALLPGILKTVRLGYDGKGQARVTTLAE 176 Query: 181 VKAAFAEMKGVTCLLEKMLPLAYEVSVLVARGR 213 ++ AFA M GV C+LEKMLPLAYEVSVL ARG Sbjct: 177 LRTAFAGMNGVPCVLEKMLPLAYEVSVLAARGH 209 >ref|YP_004754430.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Collimonas fungivorans Ter331] gb|AEK63607.1| Phosphoribosylaminoimidazole carboxylase ATPase subunit [Collimonas fungivorans Ter331] Length = 406 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 136/192 (70%), Positives = 155/192 (80%) Query: 21 WLGVMGGGQLGRMFAHAAQAMGFKVAVLEQEEDCPAGQVADRLIRTSYTDARGLEELASL 80 WLGVMGGGQLGRMF H AQAMG+KVAVLE E+DCP G VADR Y+D L E+ASL Sbjct: 25 WLGVMGGGQLGRMFTHEAQAMGYKVAVLEPEQDCPTGHVADRHFLADYSDEVALTEMASL 84 Query: 81 CGAVTTEFENVSADSLAALAEKTYVAPSAAGVSIAQDRIAEKRFFVDCGASSDVQPAPHK 140 C AVTTEFENV+ADSLA LA ++VAP+AA VS+AQDR+ EKRFF +C +S V PAPH Sbjct: 85 CAAVTTEFENVAADSLAILARSSFVAPAAASVSVAQDRMVEKRFFTECAKTSTVLPAPHH 144 Query: 141 VIASEADIDAIPADLLPGILKTVRMGYDGKGQVRVHSIADVKAAFAEMKGVTCLLEKMLP 200 +I S ADI+AIP DLLPGILKTVR+GYDGKGQ RV S+ +V+ AFA M GV C+LEKMLP Sbjct: 145 LIESAADIEAIPVDLLPGILKTVRLGYDGKGQARVRSLDEVRQAFAGMNGVACVLEKMLP 204 Query: 201 LAYEVSVLVARG 212 LAYEVSVLV RG Sbjct: 205 LAYEVSVLVVRG 216 >ref|YP_001354533.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Janthinobacterium sp. Marseille] gb|ABR88585.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Janthinobacterium sp. Marseille] Length = 361 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/172 (68%), Positives = 133/172 (77%) Query: 41 MGFKVAVLEQEEDCPAGQVADRLIRTSYTDARGLEELASLCGAVTTEFENVSADSLAALA 100 MGFKVAVLE DCPA AD L YTD+ L +LA C AVTTEFENVSA SLA LA Sbjct: 1 MGFKVAVLEPALDCPASHAADYLHCADYTDSDALTKLAGQCVAVTTEFENVSAKSLAFLA 60 Query: 101 EKTYVAPSAAGVSIAQDRIAEKRFFVDCGASSDVQPAPHKVIASEADIDAIPADLLPGIL 160 E+T+VAPSA VSIAQDR+AEKRFF++C +S V PA HK I S AD+DA+P DLLPGIL Sbjct: 61 ERTFVAPSADCVSIAQDRMAEKRFFIECATTSGVFPASHKEINSTADVDAVPDDLLPGIL 120 Query: 161 KTVRMGYDGKGQVRVHSIADVKAAFAEMKGVTCLLEKMLPLAYEVSVLVARG 212 KTVRMGYDGKGQVRV + ++ A+A M GV C+LEKMLPLAYE+SVL ARG Sbjct: 121 KTVRMGYDGKGQVRVKTREELHNAYAGMNGVACVLEKMLPLAYEISVLAARG 172