BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0085.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774107.1| peptide methionine sulfoxide reductase MsrA ... 308 3e-82 ref|YP_001100845.1| peptide methionine sulfoxide reductase (prot... 301 3e-80 ref|YP_001354529.1| peptide methionine sulfoxide reductase [Jant... 298 4e-79 ref|YP_004754427.1| peptide methionine sulfoxide reductase [Coll... 294 4e-78 ref|YP_002006292.1| methionine sulfoxide reductase a [Cupriavidu... 254 4e-66 >ref|YP_003774107.1| peptide methionine sulfoxide reductase MsrA protein [Herbaspirillum seropedicae SmR1] gb|ADJ62199.1| peptide methionine sulfoxide reductase MsrA protein [Herbaspirillum seropedicae SmR1] Length = 183 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 142/176 (80%), Positives = 158/176 (89%) Query: 25 STETAVLGGGCFWCLEAVYQQLKGVQHVESGYTGGHVKNPTYEQVCAGDTGHAEVVKLSF 84 + E AVLGGGCFWCLEAVYQQ++GV+ VESGYTGG V NP+YEQVC G TGHAEVVKL+F Sbjct: 8 AKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAF 67 Query: 85 DPALISFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYNSPAQYDTAKHIIAEMALVW 144 DP IS+RE+LE+FFTIHDPTTLNRQGNDVGTQYRSVIYY AQ+DTA+HIIAEMALVW Sbjct: 68 DPQQISYRELLEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEMALVW 127 Query: 145 DAPLVTELSPVETYYKAEDYHQNYFQQHPFQGYCAFVVAPKLAKFREVFAAKSRQE 200 DAP+VTELSP + YY+AEDYHQNYF QHPFQGYCAFVVAPK+AK REVFA KS+ E Sbjct: 128 DAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKPE 183 >ref|YP_001100845.1| peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase) (peptide Met(O) reductase) [Herminiimonas arsenicoxydans] emb|CAL62724.1| Peptide methionine sulfoxide reductase msrA (Protein-methionine-S-oxide reductase) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) [Herminiimonas arsenicoxydans] Length = 179 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 133/176 (75%), Positives = 156/176 (88%) Query: 25 STETAVLGGGCFWCLEAVYQQLKGVQHVESGYTGGHVKNPTYEQVCAGDTGHAEVVKLSF 84 +TE A LGGGCFWC EAV+QQ+KG+ +ESGYTGG V NP+YEQ+C G TGHAEVV+L+F Sbjct: 2 TTEIATLGGGCFWCTEAVFQQMKGITAIESGYTGGQVANPSYEQICEGTTGHAEVVRLTF 61 Query: 85 DPALISFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYNSPAQYDTAKHIIAEMALVW 144 DPA++SFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYY++P Q D A+H++AEMA VW Sbjct: 62 DPAVVSFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYHTPEQQDMARHVMAEMANVW 121 Query: 145 DAPLVTELSPVETYYKAEDYHQNYFQQHPFQGYCAFVVAPKLAKFREVFAAKSRQE 200 DAP+VTELSP ETYYKAEDYHQNYF+Q+P QGYCAF+VAPK+AKFR+ F K R + Sbjct: 122 DAPIVTELSPAETYYKAEDYHQNYFRQNPLQGYCAFIVAPKVAKFRQTFRDKIRAD 177 >ref|YP_001354529.1| peptide methionine sulfoxide reductase [Janthinobacterium sp. Marseille] gb|ABR89701.1| peptide methionine sulfoxide reductase [Janthinobacterium sp. Marseille] Length = 179 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 131/172 (76%), Positives = 154/172 (89%) Query: 25 STETAVLGGGCFWCLEAVYQQLKGVQHVESGYTGGHVKNPTYEQVCAGDTGHAEVVKLSF 84 + E A LGGGCFWC EAV+QQLKG++ VESGYTGGHV+NP YEQ+C G TGHAEVV+L++ Sbjct: 2 AMEIATLGGGCFWCTEAVFQQLKGIKAVESGYTGGHVENPVYEQICEGTTGHAEVVRLTY 61 Query: 85 DPALISFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYNSPAQYDTAKHIIAEMALVW 144 DP ++SFREILE+FFTIHDPTTLNRQGNDVGTQYRSVIYY+SP Q DTAKH+I+EMA VW Sbjct: 62 DPEIVSFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYHSPEQQDTAKHVISEMANVW 121 Query: 145 DAPLVTELSPVETYYKAEDYHQNYFQQHPFQGYCAFVVAPKLAKFREVFAAK 196 DAP+VTELSP ETYYKAE YHQNYF+ +P QGYCAF+VAPK++KFR+ F+ K Sbjct: 122 DAPIVTELSPAETYYKAESYHQNYFRMNPMQGYCAFIVAPKVSKFRKTFSDK 173 >ref|YP_004754427.1| peptide methionine sulfoxide reductase [Collimonas fungivorans Ter331] gb|AEK63604.1| peptide methionine sulfoxide reductase [Collimonas fungivorans Ter331] Length = 186 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 133/177 (75%), Positives = 150/177 (84%) Query: 20 AIVSTSTETAVLGGGCFWCLEAVYQQLKGVQHVESGYTGGHVKNPTYEQVCAGDTGHAEV 79 + + + E AVLGGGCFWCLEAVYQ++KGVQ VESGYTGG V NP+YEQVC G TGHAEV Sbjct: 6 GVAAMTKEVAVLGGGCFWCLEAVYQEIKGVQQVESGYTGGQVANPSYEQVCEGTTGHAEV 65 Query: 80 VKLSFDPALISFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYNSPAQYDTAKHIIAE 139 V ++FD ISFRE+LE+FFTIHDPTTLNRQGNDVGTQYRS IYY SP Q AK ++AE Sbjct: 66 VAVTFDTDQISFRELLEIFFTIHDPTTLNRQGNDVGTQYRSAIYYQSPQQETEAKKVMAE 125 Query: 140 MALVWDAPLVTELSPVETYYKAEDYHQNYFQQHPFQGYCAFVVAPKLAKFREVFAAK 196 MA VWDAP+VTELSP ETYYKAEDYHQNYF+QHP QGYCAFVVAPK+AK R++F K Sbjct: 126 MANVWDAPIVTELSPAETYYKAEDYHQNYFRQHPLQGYCAFVVAPKVAKLRKIFIDK 182 >ref|YP_002006292.1| methionine sulfoxide reductase a [Cupriavidus taiwanensis LMG 19424] emb|CAQ70229.1| Protein-methionine-S-oxide reductase [Cupriavidus taiwanensis LMG 19424] Length = 180 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 117/175 (66%), Positives = 148/175 (84%), Gaps = 2/175 (1%) Query: 27 ETAVLGGGCFWCLEAVYQQLKGVQHVESGYTGGHVKNPTYEQVCAGDTGHAEVVKLSFDP 86 ETA LGGGCFWCLEAVYQQ++GV VESGYTGGHV +PTY+QVCAGDTGH EVV++SFDP Sbjct: 6 ETATLGGGCFWCLEAVYQQVEGVVAVESGYTGGHVDHPTYQQVCAGDTGHVEVVRVSFDP 65 Query: 87 ALISFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYNSPAQYDTAKHIIAEMAL--VW 144 ++I++REILE+FF IHDPTT +RQGNDVG QYRS I+ +S AQ TA++++ E+A V+ Sbjct: 66 SVINYREILEIFFAIHDPTTPDRQGNDVGPQYRSAIFTHSEAQRATAEYVMRELAAAKVF 125 Query: 145 DAPLVTELSPVETYYKAEDYHQNYFQQHPFQGYCAFVVAPKLAKFREVFAAKSRQ 199 DAP+VT++ P + Y++AE HQNY+Q HP QGYCAFV++PKLAKFR+ F AK R+ Sbjct: 126 DAPIVTQVEPEQPYWRAEASHQNYYQDHPSQGYCAFVISPKLAKFRKQFGAKLRK 180