BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0065.p (410 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004685086.1| NAD(P) transhydrogenase subunit beta [Cupria... 716 0.0 ref|YP_002982505.1| NAD(P)(+) transhydrogenase [Ralstonia picket... 707 0.0 ref|YP_299910.1| NAD(P) transhydrogenase subunit beta [Ralstonia... 705 0.0 ref|YP_003774126.1| transmembrane NAD(P) transhydrogenase subuni... 702 0.0 ref|YP_004754279.1| NAD(P) transhydrogenase subunit beta [Collim... 702 0.0 >ref|YP_004685086.1| NAD(P) transhydrogenase subunit beta [Cupriavidus necator N-1] gb|AEI76605.1| NAD(P) transhydrogenase subunit beta [Cupriavidus necator N-1] Length = 489 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/406 (88%), Positives = 380/406 (93%), Gaps = 2/406 (0%) Query: 5 VVVGGGIGAYLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHG-EAIP 63 +VVGGGIGAY+AK V+MTKMPELVAAMHSLIGLAAV I+VAAVAEP AF I A G IP Sbjct: 83 LVVGGGIGAYVAKKVQMTKMPELVAAMHSLIGLAAVFISVAAVAEPAAFGITAAGSHDIP 142 Query: 64 LGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMIG 123 LGNR+ELFIG FVGAITFSGSVIAFGKL+G+YKFRLFQGAPV F+GQH LNLLLAVAM+G Sbjct: 143 LGNRIELFIGCFVGAITFSGSVIAFGKLAGRYKFRLFQGAPVVFAGQHWLNLLLAVAMVG 202 Query: 124 FGVIFVLTQNWLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLN 183 FG+ F LTQ W+PF++M A+AFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLN Sbjct: 203 FGIAFFLTQAWMPFLVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLN 262 Query: 184 NSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSGS 243 N MLIIAGSLVGSSGAILSYIMC+AMNRSFFNVILGGFG D AAA+ GQAQRNVKSGS Sbjct: 263 NPMLIIAGSLVGSSGAILSYIMCRAMNRSFFNVILGGFGSDAAAASGPAGQAQRNVKSGS 322 Query: 244 ADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHM 303 ADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTE LTH+GV VKYAIHPVAGRMPGHM Sbjct: 323 ADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEVLTHRGVTVKYAIHPVAGRMPGHM 382 Query: 304 NVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAK-DPKSSIAGMPILEAY 362 NVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAK DPKS IAGMPILEAY Sbjct: 383 NVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAKNDPKSPIAGMPILEAY 442 Query: 363 KAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKA 408 KAKT+IVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKV+EDM+KA Sbjct: 443 KAKTIIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVVEDMLKA 488 >ref|YP_002982505.1| NAD(P)(+) transhydrogenase [Ralstonia pickettii 12D] gb|ACS63833.1| NAD(P)(+) transhydrogenase (AB-specific) [Ralstonia pickettii 12D] Length = 486 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/410 (89%), Positives = 383/410 (93%), Gaps = 3/410 (0%) Query: 4 GVVVGGGIGAYLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHGE-AI 62 G+VVGGGIGAY+A++VEMTKMPELVAAMHSLIGLAAVCIA AAVAEP AF I G+ + Sbjct: 77 GLVVGGGIGAYVARTVEMTKMPELVAAMHSLIGLAAVCIATAAVAEPSAFGITVAGDNVL 136 Query: 63 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMI 122 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPV F+GQHMLNLLLAVAM+ Sbjct: 137 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVQFAGQHMLNLLLAVAML 196 Query: 123 GFGVIFVLTQNWLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 182 GFG++F L+Q+WLPFIIM AIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL Sbjct: 197 GFGILFFLSQSWLPFIIMTAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 256 Query: 183 NNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQA-QRNVKS 241 NN MLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFG + +A AA GG QR VKS Sbjct: 257 NNPMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGSEASAGAAAGGSGQQRPVKS 316 Query: 242 GSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPG 301 GS DDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKL+ KGV VKYAIHPVAGRMPG Sbjct: 317 GSPDDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLSDKGVTVKYAIHPVAGRMPG 376 Query: 302 HMNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAK-DPKSSIAGMPILE 360 HMNVLLAEAEVPYDQVFEMEDIN EFGQADVVLVLGANDVVNPAAK DPKS IAGMPILE Sbjct: 377 HMNVLLAEAEVPYDQVFEMEDINGEFGQADVVLVLGANDVVNPAAKNDPKSPIAGMPILE 436 Query: 361 AYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 AYKAKT+IVNKRSM AGYAGLDNELFYMDKTMMVFGDAKKV+EDMVK+VE Sbjct: 437 AYKAKTIIVNKRSMNAGYAGLDNELFYMDKTMMVFGDAKKVVEDMVKSVE 486 >ref|YP_299910.1| NAD(P) transhydrogenase subunit beta [Ralstonia eutropha JMP134] gb|AAZ65066.1| NAD(P) transhydrogenase, beta subunit [Ralstonia eutropha JMP134] Length = 489 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/409 (89%), Positives = 382/409 (93%), Gaps = 2/409 (0%) Query: 4 GVVVGGGIGAYLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHG-EAI 62 G+VVGGGIGAY+AK VEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP AF IA G I Sbjct: 81 GLVVGGGIGAYVAKKVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPSAFGIAPAGSHEI 140 Query: 63 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMI 122 P+GNR+ELFIG FVGAITFSGSVIAFGKL+G+YKFRLFQGAPV F+GQHMLNL LAVAM+ Sbjct: 141 PMGNRIELFIGCFVGAITFSGSVIAFGKLAGRYKFRLFQGAPVVFAGQHMLNLALAVAMV 200 Query: 123 GFGVIFVLTQNWLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 182 GFG+ F +TQ W PF++M AIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL Sbjct: 201 GFGIAFFMTQEWTPFLVMLAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 260 Query: 183 NNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSG 242 NN MLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFG D A+AA G Q QRNVKSG Sbjct: 261 NNPMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGSDAGASAAGGSQVQRNVKSG 320 Query: 243 SADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGH 302 SADDA+FLMGNAETVIIVPGYGLAVARAQHALKELTEKLT KGV VKYAIHPVAGRMPGH Sbjct: 321 SADDASFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTEKGVTVKYAIHPVAGRMPGH 380 Query: 303 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAK-DPKSSIAGMPILEA 361 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNP+AK DPKS IAGMPILEA Sbjct: 381 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPSAKTDPKSPIAGMPILEA 440 Query: 362 YKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 YKAKT+IVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKV+EDMVKAVE Sbjct: 441 YKAKTIIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVVEDMVKAVE 489 >ref|YP_003774126.1| transmembrane NAD(P) transhydrogenase subunit beta [Herbaspirillum seropedicae SmR1] gb|ADJ62218.1| transmembrane NAD(P) transhydrogenase (beta subunit) protein [Herbaspirillum seropedicae SmR1] Length = 479 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/397 (94%), Positives = 383/397 (96%), Gaps = 1/397 (0%) Query: 14 YLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHGEAIPLGNRVELFIG 73 YLA+SVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWA I+AHG+ IP+GNRVELFIG Sbjct: 84 YLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWALGISAHGQLIPVGNRVELFIG 143 Query: 74 TFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMIGFGVIFVLTQN 133 TFVGAITFSGSVIAFGKLSGKYKFRLFQGAPV+F+GQH LNLLLAVAMIGFG+IFVLTQN Sbjct: 144 TFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQHFLNLLLAVAMIGFGIIFVLTQN 203 Query: 134 WLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSL 193 WLPFIIMAAIAF LGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSL Sbjct: 204 WLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSL 263 Query: 194 VGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSGSADDAAFLMGN 253 VGSSGAILSYIMCKAMNRSFFNVILGGFGGD AAAA G Q QRNVKSGSADDAAFLMGN Sbjct: 264 VGSSGAILSYIMCKAMNRSFFNVILGGFGGD-AAAAGGGAQQQRNVKSGSADDAAFLMGN 322 Query: 254 AETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLAEAEVP 313 AETVIIVPGYGLAVARAQHALKELTEKLTH GV VKYAIHPVAGRMPGHMNVLLAEAEVP Sbjct: 323 AETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYAIHPVAGRMPGHMNVLLAEAEVP 382 Query: 314 YDQVFEMEDINSEFGQADVVLVLGANDVVNPAAKDPKSSIAGMPILEAYKAKTVIVNKRS 373 YDQVFEMEDINSEF QADVVLVLGANDVVNPAAKDPKS IAGMPILEAYKAKTVIVNKRS Sbjct: 383 YDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKSPIAGMPILEAYKAKTVIVNKRS 442 Query: 374 MAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 MAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAV+ Sbjct: 443 MAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVD 479 >ref|YP_004754279.1| NAD(P) transhydrogenase subunit beta [Collimonas fungivorans Ter331] gb|AEK63456.1| NAD(P) transhydrogenase subunit beta [Collimonas fungivorans Ter331] Length = 478 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/396 (93%), Positives = 377/396 (95%) Query: 15 LAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHGEAIPLGNRVELFIGT 74 LAK VEMTKMPELVAAMHSLIGLAAVCIAVAAV+EPWAF IAAHGEA+P GNR+ELFIGT Sbjct: 83 LAKRVEMTKMPELVAAMHSLIGLAAVCIAVAAVSEPWAFGIAAHGEALPTGNRIELFIGT 142 Query: 75 FVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMIGFGVIFVLTQNW 134 FVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSF GQH +NLLLAVAMIG G+IFVLTQ W Sbjct: 143 FVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFRGQHFINLLLAVAMIGLGIIFVLTQAW 202 Query: 135 LPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLV 194 LPFI+MA IAF+LGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLV Sbjct: 203 LPFILMALIAFILGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLV 262 Query: 195 GSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSGSADDAAFLMGNA 254 GSSGAILSYIMCKAMNRSFFNVILGGFGGD AAA Q QR VKSGSADDAAFLMGNA Sbjct: 263 GSSGAILSYIMCKAMNRSFFNVILGGFGGDAAAATGGAAQQQRPVKSGSADDAAFLMGNA 322 Query: 255 ETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLAEAEVPY 314 ETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLAEAEVPY Sbjct: 323 ETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLAEAEVPY 382 Query: 315 DQVFEMEDINSEFGQADVVLVLGANDVVNPAAKDPKSSIAGMPILEAYKAKTVIVNKRSM 374 DQVFEMEDIN EF QADVVLVLGANDVVNPAAKDPKSSIAGMPILE YKAKTVIVNKRSM Sbjct: 383 DQVFEMEDINGEFAQADVVLVLGANDVVNPAAKDPKSSIAGMPILEVYKAKTVIVNKRSM 442 Query: 375 AAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 AAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE Sbjct: 443 AAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 478