BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0055.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA)... 414 e-114 ref|YP_004754270.1| Dimethyladenosine transferase [Collimonas fu... 412 e-113 ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacte... 404 e-111 ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas... 401 e-110 ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacterace... 369 e-100 >ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ62227.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/268 (77%), Positives = 230/268 (85%), Gaps = 10/268 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKHI RKRFGQNFLTD+ VLHDII++IAP DD MVEIGPGLAAMT LLLE L +H + Sbjct: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RL+K+FD RL VHSADALKFDF++IPVP GRKLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVERLKKRFDAARLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA +AP VQDQHFMLQKEVVERMVA+PGSKA+GRLSVMLQWRY M+L+FVVPPT Sbjct: 113 SPLLFHLAEIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPP+V+SAIVRMIP+A PL C Q+LLE+VVTKAFSQRRKVIRNCVAGL E +L Sbjct: 173 AFDPPPKVDSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQV 232 Query: 241 GIDPQARPEAVPMEQFVALANVL--RQH 266 GIDPQARPEAVPMEQFVALAN+L RQH Sbjct: 233 GIDPQARPEAVPMEQFVALANLLAARQH 260 >ref|YP_004754270.1| Dimethyladenosine transferase [Collimonas fungivorans Ter331] gb|AEK63447.1| Dimethyladenosine transferase [Collimonas fungivorans Ter331] Length = 270 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/262 (78%), Positives = 223/262 (85%), Gaps = 8/262 (3%) Query: 2 KHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMTR 61 HI RKRFGQNFLTD +VL++IISAI PQ DD MVEIGPGLAAMTRLLLESL ++H + Sbjct: 16 NHIPRKRFGQNFLTDDTVLYNIISAIDPQADDNMVEIGPGLAAMTRLLLESLRQLHVV-- 73 Query: 62 LLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNISS 121 LD RDLVARLQK FDP RLHVHSADALKFDF SIP+ G+KLRVVGNLPYNISS Sbjct: 74 ----ELD--RDLVARLQKNFDPARLHVHSADALKFDFNSIPLNGGKKLRVVGNLPYNISS 127 Query: 122 PLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPTA 181 PL+FHLA +AP VQDQHFMLQKEVVERMVA PGSKAFGRLSVMLQWRY MQLMF+VPPTA Sbjct: 128 PLLFHLAEIAPQVQDQHFMLQKEVVERMVAAPGSKAFGRLSVMLQWRYTMQLMFIVPPTA 187 Query: 182 FDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAAG 241 FDPPPRVESAIVRMIPIA PL CDQ LE+VV KAF+QRRKVIRNC+AG+ E +LI AG Sbjct: 188 FDPPPRVESAIVRMIPIAQPLACDQKKLEDVVLKAFTQRRKVIRNCLAGMFTENELIDAG 247 Query: 242 IDPQARPEAVPMEQFVALANVL 263 +DPQARPE + ME FVALAN L Sbjct: 248 VDPQARPETIAMELFVALANRL 269 >ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] sp|A6SV13.1|RSMA_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gb|ABR88294.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] Length = 255 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/263 (75%), Positives = 224/263 (85%), Gaps = 8/263 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKHI RKRFGQNFLTD +VL++II AI PQ D MVEIGPGLAAMTRLLLE + +MH + Sbjct: 1 MKHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLEGVQQMHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RL+K FDPKRL +HSADAL+FDF++IPVPAG KLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVERLKKSFDPKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA +AP VQDQHFMLQKEVVERMVA+PGSK +GRLSVMLQWRY M+LMFVVPPT Sbjct: 113 SPLLFHLAEMAPHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPPRVESAIVRMIP+A PL CDQ+ LE+VV KAFSQRRKVIRNC+AG+ E+DL+ Sbjct: 173 AFDPPPRVESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEV 232 Query: 241 GIDPQARPEAVPMEQFVALANVL 263 GIDPQ RPE +P+ Q+VALAN L Sbjct: 233 GIDPQLRPETIPLAQYVALANRL 255 >ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas arsenicoxydans] sp|A4G256.1|RSMA_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase emb|CAL60593.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Herminiimonas arsenicoxydans] Length = 255 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/263 (74%), Positives = 223/263 (84%), Gaps = 8/263 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKHI RKRFGQNFLTD VLH+II AI PQ D MVEIGPGLAAMTRLLL+ +++MH + Sbjct: 1 MKHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLDGVNQMHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RL+K FDPK+L +HSADAL+FDF++IPVPAG KLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVERLKKTFDPKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA +AP VQDQHFMLQKEVVERMVA+PGSK +GRLSVMLQWRY M+LMF+VPPT Sbjct: 113 SPLLFHLAEMAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPPRVESAIVRMIPI PL CDQ+ LE+VV KAFSQRRKVIRNC+AG+ EADLI A Sbjct: 173 AFDPPPRVESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEA 232 Query: 241 GIDPQARPEAVPMEQFVALANVL 263 GI+PQ RPE + + Q+VALAN L Sbjct: 233 GINPQMRPETISLAQYVALANRL 255 >ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33015.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] Length = 259 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/263 (70%), Positives = 212/263 (80%), Gaps = 8/263 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKH+ARKRFGQNFLTD+ VL DII IAP + D MVEIGPGL AMTRLLL+ LD++H + Sbjct: 1 MKHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRLLLDDLDQLHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RLQK FDPK+L +HS DAL+FDF ++PVPAG+KLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVVRLQKTFDPKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA+ LVQDQHFMLQKEVVERMVA PG K++GRLSVMLQWRY M L F+VPPT Sbjct: 113 SPLLFHLASFTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPPRVESAIVRMIP+ PL C+Q LE VV KAFS RRKV+RNC+AG+ E LI A Sbjct: 173 AFDPPPRVESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDA 232 Query: 241 GIDPQARPEAVPMEQFVALANVL 263 G+DP RPE + +EQ+V LAN L Sbjct: 233 GVDPTLRPETISLEQYVGLANRL 255