BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0053.p (569 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 580 e-163 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 568 e-159 ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herba... 536 e-150 gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis pr... 521 e-145 ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp... 504 e-140 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 331/576 (57%), Positives = 416/576 (72%), Gaps = 18/576 (3%) Query: 5 NFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIKNVNV 64 N +IG RL + FG +V+LLV +A L TR+ GLN+ + EV D+YPKTVLAN + ++N Sbjct: 3 NLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQ 62 Query: 65 IARSSRNVLLMTDADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMDARTQ 124 IAR+ RN LLMT+ I E+ I KA DS L +L+ + ++GR + + R++ Sbjct: 63 IARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADRSK 122 Query: 125 YNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKEVEEE 184 + +D+ ++L AG K++A LL VRP QL+Y+++++ LI +QNELM+ + E + Sbjct: 123 FLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEANAK 182 Query: 185 YIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDASAKDE 244 + + L+ S+IA++ A + A L TRSIT PLS+AV +A VA GDLT +KDE Sbjct: 183 ASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDE 242 Query: 245 TGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEETASS 304 TGQLL+AL+ MN+ LL IV++VR GTDTIA+AS QIA GNLDLSSRTEQQASSLEETASS Sbjct: 243 TGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASS 302 Query: 305 MEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDIISVI 364 MEELTSTVKQNAENAR++N+LA+SAS VAV GG VV KVV TM IN S++KIVDII VI Sbjct: 303 MEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVI 362 Query: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDSVEKV 424 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK LI DSV+KV Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKV 422 Query: 425 DSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVTQQNA 484 GS+LV+ AG TM EVV SV+RVTDI+ EIT AS+EQ++GIEQ+NQAV QMDQVTQQNA Sbjct: 423 SIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNA 482 Query: 485 ALVEEAAAAAQSLQDQATSLSQIVGVFKIDSNRLPDKAGASSSVQQRPHDVTPKTPSLAR 544 ALVEEAAAAA+SLQ QA+ LSQ+VGVFK+D + ++ V P P+ P +A Sbjct: 483 ALVEEAAAAAESLQGQASHLSQVVGVFKLDGH-------GTTVVNAVPTYTAPEQPKVAG 535 Query: 545 KQEAPRLPAA---------ARTP--VTGKDDDWEQF 569 K ++ AR P V D+WEQF Sbjct: 536 KAALHKVKTTQQKIEDKEFARVPRNVVPAGDEWEQF 571 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 332/566 (58%), Positives = 414/566 (73%), Gaps = 3/566 (0%) Query: 5 NFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIKNVNV 64 N +IG RL + FG +V +L+ +AV+ TRL L+ + V ND+YPKTV A+ I +N Sbjct: 3 NLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTLNE 62 Query: 65 IARSSRNVLLMTDADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMDARTQ 124 AR+ RN LLMTDA +I E+ TI+K + L+KLD I +KGR +K++ DAR + Sbjct: 63 TARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARGR 122 Query: 125 YNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKEVEEE 184 + +D+ + LV G + +A +LL VRP QL YM ++ L+ Q+ LM A ++ E Sbjct: 123 FTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEV 182 Query: 185 YIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDASAKDE 244 A+ LV LSVIA++ + + +L TRSIT PLS+AV +A VA GDLT ++KDE Sbjct: 183 SANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDE 242 Query: 245 TGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEETASS 304 TGQLL+AL+ MN+ L+ IV++VR GTDTIATAS+QIA GNLDLSSRTE+QASSLEETASS Sbjct: 243 TGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASS 302 Query: 305 MEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDIISVI 364 MEELTSTVKQNA+NAR++N+LA++AS VAV GG VV +VV TM SIN S+ KIVDII VI Sbjct: 303 MEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVI 362 Query: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDSVEKV 424 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK+LIDDSVEKV Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKV 422 Query: 425 DSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVTQQNA 484 ++GS+LV AG TM EVV SVRRVTDI+GEIT AS+EQ++GIEQ+NQAV QMDQVTQQNA Sbjct: 423 NNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNA 482 Query: 485 ALVEEAAAAAQSLQDQATSLSQIVGVFKIDSNRLPDKAGASSSVQQRPHDVTPKTPSLAR 544 ALVEEAAAAA+SLQDQA +LSQ+V VFK+D+N + + A+S V K R Sbjct: 483 ALVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQ--ATSRVAAPASRPVSKPAQQIR 540 Query: 545 KQEAPRLPAAARTPVTGKD-DDWEQF 569 + R T D D+WEQF Sbjct: 541 SANVDKQIVRQRASATAGDGDEWEQF 566 >ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ61560.1| methyl-accepting chemotaxis protein I protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 316/528 (59%), Positives = 404/528 (76%), Gaps = 1/528 (0%) Query: 1 MRIANFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M+++N I RL +GFG L++L+++MA G+ RL LN QM +VI+DKYPKTV+A DI+ Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 61 NVNVIARSSRNVLLMTDADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMD 120 +N+IARS RN+LL+ +I E + I A + + L +LD L+T RA + +++ Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 121 ARTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKE 180 A+ Y RD+VL +V G K A +L+ VRP+Q M+A + LI Q+E+M+ A E Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 181 VEEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 VE Y +AR L++ L+ L A +IAW++TRSIT+PL RAV+VAETVAAGDLTS DA Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 241 AKDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEE 300 +DET LLRAL+ MND LLDIVS+VR TDTIATAS++IA GNLDLSSRTE+QA+SLEE Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 300 Query: 301 TASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDI 360 TASSME+LT+TVKQNA +A +A++LA SAS +A +GG VVG VV TM +I+ASS+KIVDI Sbjct: 301 TASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA EIK+LI DS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAHEIKALIADS 420 Query: 421 VEKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVT 480 V +V +GSKLVEQAG+TM+EVV SV+RV ++V EI+ A +EQS GIEQVN A+ QMDQVT Sbjct: 421 VARVGNGSKLVEQAGRTMHEVVQSVQRVGEVVNEISSAGQEQSAGIEQVNLAIVQMDQVT 480 Query: 481 QQNAALVEEAAAAAQSLQDQATSLSQIVGVFKI-DSNRLPDKAGASSS 527 QQNAALVE+AAAAAQ+LQDQA L+++V +FK+ D+ P + A +S Sbjct: 481 QQNAALVEQAAAAAQALQDQAAQLARMVSIFKLEDAASEPRRVAAPAS 528 >gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis protein I [Rahnella aquatilis] Length = 554 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 290/569 (50%), Positives = 400/569 (70%), Gaps = 21/569 (3%) Query: 3 IANFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIKNV 62 I N R+GARLG F ++LLL+ ++V VT++S +N ++++I+D+Y K LA D+ V Sbjct: 5 INNMRVGARLGAAFSLVILLLIIVSVTAVTKISSINSSIEQIISDRYVKVRLAFDVRDGV 64 Query: 63 NVIARSSRNVLLMT-DADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMDA 121 N + R +++ T + ++ K + + T ++K+ ++ T G+ +K++ DA Sbjct: 65 NDQIKYLRGIVIDTKNPEQNNKRYLQLDDSVKQTNLAMDKIAAIQTTVVGKQKIKALQDA 124 Query: 122 RTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKEV 181 + +++++ L AG + AT +L+ + Q Y+ Q++ +Q K+ Sbjct: 125 SDIFEAAKEQLVALARAGDMDGATEFVLRKLTTSQNAYLDLASAFANSQDQQLQAEGKKA 184 Query: 182 EEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDASA 241 + A L + SV+A++ A + + +TRSIT PL AVKVAE VAAGDLT+Q ++ Sbjct: 185 IADGHNAIQLTLIFSVLAILVAAALGFFLTRSITRPLHTAVKVAENVAAGDLTTQIQVTS 244 Query: 242 KDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEET 301 DETGQL++ L+ MN+NLL IV+ VR GT+ I +AS +IAAGNLDLSSRTEQQASSLEET Sbjct: 245 GDETGQLMQGLKNMNENLLKIVTEVRAGTNAIHSASGEIAAGNLDLSSRTEQQASSLEET 304 Query: 302 ASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDII 361 AS+ME++T+TVKQNA+NAR+AN+LA AS VAV+GG VVG+VV+TME INASSRKIVDII Sbjct: 305 ASAMEQMTATVKQNADNARQANQLAAQASRVAVQGGEVVGEVVNTMEGINASSRKIVDII 364 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDSV 421 +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LIDDSV Sbjct: 365 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLIDDSV 424 Query: 422 EKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVTQ 481 KVD+G++LV +AG TM EVVSSV+ VTDIVGEI AS EQS GIE++N+A+TQMD+VTQ Sbjct: 425 AKVDNGTQLVAKAGSTMAEVVSSVKSVTDIVGEIAIASNEQSTGIEEINKAITQMDEVTQ 484 Query: 482 QNAALVEEAAAAAQSLQDQATSLSQIVGVFKIDSNRLPDKAGASSSVQQRPHDVTPKTPS 541 QNAALV+EA++AA SL +QA LSQ + +FK+ + A+++V++ H KTP+ Sbjct: 485 QNAALVQEASSAAYSLNEQAERLSQAISIFKVSA------GSATAAVRKAAH---AKTPA 535 Query: 542 -LARKQEAPRLPAAARTPVTGKDDDWEQF 569 L+ +Q P + ++ +WE F Sbjct: 536 LLSNRQPVPVI----------EEGNWETF 554 >ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 308/577 (53%), Positives = 404/577 (70%), Gaps = 10/577 (1%) Query: 1 MRIANFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M+I++ +I RLG F L++++ +A +GV L +++ DE++ND+Y K L I Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NVNVIARSSRNVLLMTDADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMD 120 VN ARS RN ++ + +E K + + L +++ +G L+ ++ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKE 180 AR Y+ R +V+ L+ +++AT L P+Q Y +AV+ +++ Q+ LM +++ Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 VEEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 A N+++ LS +A++ + L A L+TRSIT PL+ AV+VA VAAGDLT Q +A+ Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 AKDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEE 300 +KDETG LL AL++MNDNL IV+ VR GTDTI TAS +IA GNLDLSSRTEQQA +LEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDI 360 TAS+MEELTSTV+QNA+NAR+AN LA +AS VA++GG+VVG+VV TM IN +SRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLID S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VEKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVT 480 VE+V+SGS+LV QAG TM EVV+SV+RVTD+V EIT AS EQS+GIEQ+NQA+ QMD+VT Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQSLQDQATSLSQIVGVFKIDSNRLPDKAGASSSVQQRPHDVTPKTP 540 QQNAALVE+AAAAAQSLQ+Q+ LS VG+F++ ++ + S+ V QR V P P Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPV-QRSVQVAPARP 540 Query: 541 SLARKQEAPRLPAAART--------PVTGKDDDWEQF 569 LARK R A A++ D WEQF Sbjct: 541 VLARK-PVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576