BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0035.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03264276.1| putative signal transduction protein with CBS...   163   1e-38
ref|YP_001861728.1| signal transduction protein [Burkholderia ph...   157   6e-37
ref|YP_662091.1| signal transduction protein [Pseudoalteromonas ...   144   3e-33
ref|YP_868700.1| CBS domain-containing protein [Shewanella sp. A...   139   1e-31
ref|YP_733192.1| CBS domain-containing protein [Shewanella sp. M...   139   1e-31

>ref|ZP_03264276.1| putative signal transduction protein with CBS domains [Burkholderia
           sp. H160]
 gb|EEA04120.1| putative signal transduction protein with CBS domains [Burkholderia
           sp. H160]
          Length = 150

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 99/127 (77%)

Query: 6   IKKIMTAKLVTAGLDDKLETVKEIFDNLKFHHLLVVEKHKLLGVVSDRDLLKALSPNIGS 65
           I+ +MT ++VT G DD L+T+KEIF+   FHH+LVVE  +L GVVSDRDLL+ALSP I S
Sbjct: 3   IEDLMTRRVVTVGFDDTLKTIKEIFEQAGFHHVLVVEDRRLEGVVSDRDLLRALSPFIDS 62

Query: 66  ARETFQDIASLNKRVHQIMTRRPIVLQESATVDDAIHAFNTHGISCLPVVDLNFRPVGIV 125
             ET +D+ +L+KRVHQIM+R+PI L+  A V +AI  F TH ISC+PVVD  FRPVGIV
Sbjct: 63  VVETHRDVGTLSKRVHQIMSRKPITLEPHADVTEAIQLFLTHPISCIPVVDSEFRPVGIV 122

Query: 126 TWRDILK 132
           +WRD+LK
Sbjct: 123 SWRDVLK 129


>ref|YP_001861728.1| signal transduction protein [Burkholderia phymatum STM815]
 gb|ACC74682.1| putative signal transduction protein with CBS domains [Burkholderia
           phymatum STM815]
          Length = 151

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 97/129 (75%)

Query: 4   VSIKKIMTAKLVTAGLDDKLETVKEIFDNLKFHHLLVVEKHKLLGVVSDRDLLKALSPNI 63
           + ++ +MT ++VT G DD LETVK+IF++  FHHLLVVE   L GVVSDRDLL+ALSP I
Sbjct: 2   MKVEDLMTKRVVTVGFDDTLETVKDIFEHSGFHHLLVVEDRSLQGVVSDRDLLRALSPFI 61

Query: 64  GSARETFQDIASLNKRVHQIMTRRPIVLQESATVDDAIHAFNTHGISCLPVVDLNFRPVG 123
            S  ET +DI +L++RVHQIM+R+PI L+  A V DAI     H ISC+P+VD  F PVG
Sbjct: 62  DSVVETQRDIGTLSRRVHQIMSRKPITLRPDADVTDAIQLLLAHPISCIPIVDGEFHPVG 121

Query: 124 IVTWRDILK 132
           IV+WRDILK
Sbjct: 122 IVSWRDILK 130


>ref|YP_662091.1| signal transduction protein [Pseudoalteromonas atlantica T6c]
 gb|ABG41037.1| putative signal transduction protein with CBS domains
           [Pseudoalteromonas atlantica T6c]
          Length = 143

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 101/134 (75%)

Query: 4   VSIKKIMTAKLVTAGLDDKLETVKEIFDNLKFHHLLVVEKHKLLGVVSDRDLLKALSPNI 63
           + + K+M+ ++V+  +DD L  V+ +F++ +FHHLLVV+K +L+G++SDRDLLKA+SP +
Sbjct: 1   MQVDKLMSVEVVSINMDDTLAHVRVLFEHHRFHHLLVVDKGQLVGIISDRDLLKAISPAV 60

Query: 64  GSARETFQDIASLNKRVHQIMTRRPIVLQESATVDDAIHAFNTHGISCLPVVDLNFRPVG 123
           G+A ET +D+A L K  HQIMTR P+ L   + + +AI AFN + ISCLP+V++N +P+G
Sbjct: 61  GTASETSKDLAYLKKPAHQIMTRDPVCLSPKSGLLEAIKAFNRYSISCLPIVNINNKPIG 120

Query: 124 IVTWRDILKNLRIN 137
           I++WRDI K +  N
Sbjct: 121 ILSWRDIFKFIEHN 134


>ref|YP_868700.1| CBS domain-containing protein [Shewanella sp. ANA-3]
 gb|ABK47294.1| CBS domain containing protein [Shewanella sp. ANA-3]
          Length = 143

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 6   IKKIMTAKLVTAGLDDKLETVKEIFDNLKFHHLLVVEKHKLLGVVSDRDLLKALSPNIGS 65
           I  IM  ++VT  +DD+L   KEIF+   FHHLLVV+++KL GV+S+RDLL+A+SPN+GS
Sbjct: 5   IADIMRTRVVTVEMDDRLTVAKEIFEQANFHHLLVVDEYKLEGVLSERDLLRAISPNLGS 64

Query: 66  ARETFQDIASLNKRVHQIMTRRPIVLQESATVDDAIHAFNTHGISCLPVVDLNFRPVGIV 125
           + ET +D+ +L KRVHQ+MTR P+ +    ++D A H    H I CLPV+D N   VGIV
Sbjct: 65  SAETAKDLETLQKRVHQVMTRNPVTVAPHVSLDAATHTLLEHNIGCLPVLD-NGDLVGIV 123

Query: 126 TWRDILK 132
           TW+D+L+
Sbjct: 124 TWKDLLR 130


>ref|YP_733192.1| CBS domain-containing protein [Shewanella sp. MR-4]
 gb|ABI38135.1| CBS domain containing protein [Shewanella sp. MR-4]
          Length = 143

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 6   IKKIMTAKLVTAGLDDKLETVKEIFDNLKFHHLLVVEKHKLLGVVSDRDLLKALSPNIGS 65
           I  IM  ++VT  +DD+L   K+IFD   FHHLLVV+++KL GV+S+RDLL+A+SPN+GS
Sbjct: 5   IADIMRTRVVTVEMDDRLTVAKDIFDQANFHHLLVVDEYKLEGVLSERDLLRAISPNLGS 64

Query: 66  ARETFQDIASLNKRVHQIMTRRPIVLQESATVDDAIHAFNTHGISCLPVVDLNFRPVGIV 125
           + ET +D+ +L KRVHQ+MTR P+ +    ++D A H    H I CLPV+D N   VGIV
Sbjct: 65  SAETAKDLETLQKRVHQVMTRNPVTVAPHVSLDAATHTLLEHNIGCLPVLD-NGDLVGIV 123

Query: 126 TWRDILK 132
           TW+D+L+
Sbjct: 124 TWKDLLR 130