BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0016.p (570 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08868225.1| DNA/RNA helicase [Azospirillum amazonense Y2]... 954 0.0 ref|ZP_01034113.1| DNA/RNA helicase [Roseovarius sp. 217] >gi|85... 671 0.0 ref|ZP_08235341.1| type III restriction protein res subunit [Str... 401 e-109 ref|YP_923472.1| type III restriction enzyme, res subunit [Nocar... 397 e-108 ref|ZP_06412173.1| type III restriction protein res subunit [Fra... 379 e-103 >ref|ZP_08868225.1| DNA/RNA helicase [Azospirillum amazonense Y2] gb|EGY02186.1| DNA/RNA helicase [Azospirillum amazonense Y2] Length = 557 Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/555 (84%), Positives = 513/555 (92%) Query: 16 EPFLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCK 75 EPFL+ +RLL+GPWQAFERDVARLL+CNGFEDVRL+ GSGD GADVLGVKN ELWVIQCK Sbjct: 3 EPFLDAERLLKGPWQAFERDVARLLVCNGFEDVRLVAGSGDHGADVLGVKNGELWVIQCK 62 Query: 76 FTTGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPAT 135 FTTGGYPS AV++VGEAAR+Y+ADR+YVA+SRRAGPA +I+RW ALGIEIG+LEPA Sbjct: 63 FTTGGYPSANAVNEVGEAARFYKADRIYVASSRRAGPATHEAIKRWKALGIEIGVLEPAM 122 Query: 136 LLEMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQL 195 LLE+AR+SPEY RR+LRDYQ EAV++FV SLRETGR QVVLATGLGKTVVLAES+AQL Sbjct: 123 LLELARKSPEYTVHRRELRDYQDEAVEKFVASLRETGRAQVVLATGLGKTVVLAESVAQL 182 Query: 196 FRDEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQS 255 FRDEAIP GRALVLAGTRELVDQLQ +FWDQLPKWIPTHRL+GGE PS W+GITFAT+QS Sbjct: 183 FRDEAIPEGRALVLAGTRELVDQLQRSFWDQLPKWIPTHRLMGGESPSHWDGITFATIQS 242 Query: 256 AVSRLDELPDFGVVMIDEAHHVGSDTFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLGP 315 AVSRLDELP FG+V+IDEAHHVGS+TFRRVT+ ++EAMIGGVTATPWRGDGYDID LLGP Sbjct: 243 AVSRLDELPAFGLVLIDEAHHVGSETFRRVTEHLSEAMIGGVTATPWRGDGYDIDELLGP 302 Query: 316 PVVRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEAA 375 PVV+IGIAEGL+RGFLCEADYRLLADNIDW VR+ SRN YS++QLN+LLLLPTRDEEAA Sbjct: 303 PVVKIGIAEGLKRGFLCEADYRLLADNIDWELVRTQSRNRYSLSQLNRLLLLPTRDEEAA 362 Query: 376 RAIRDTFDKEFRRSAIIFCSSVTHATSFAAMLRLFGFRAEPITGDMTSRERDRTMAAFRK 435 RAIR+TFDKE RRSAI+FCSSV HA SFAA LRLFGFRAEPITG+MT+RERDR MAAFRK Sbjct: 363 RAIRETFDKERRRSAIVFCSSVHHANSFAATLRLFGFRAEPITGEMTARERDRVMAAFRK 422 Query: 436 GSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVLDFVS 495 GSLDVVTTRDLFNEGVDVPDVDMI FMRVTHSRRIFVQQLGRGLRISPKK KVVVLDFVS Sbjct: 423 GSLDVVTTRDLFNEGVDVPDVDMIAFMRVTHSRRIFVQQLGRGLRISPKKTKVVVLDFVS 482 Query: 496 DLRRLAEVVELEKAVRGDVERLRLPGVIQFRDEGAGSFMLDWMKDQADLFTREGDPTLEL 555 DLRR+AEVVELEKA RGD+ERLRLPG++ FRDEGAGSFMLDWM+DQADLF REGDPTLEL Sbjct: 483 DLRRIAEVVELEKAARGDLERLRLPGMVHFRDEGAGSFMLDWMRDQADLFMREGDPTLEL 542 Query: 556 PAFDFPAPHTWGGIQ 570 PAFDFP PH G +Q Sbjct: 543 PAFDFPKPHNRGTVQ 557 >ref|ZP_01034113.1| DNA/RNA helicase [Roseovarius sp. 217] gb|EAQ26794.1| DNA/RNA helicase [Roseovarius sp. 217] Length = 557 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/554 (61%), Positives = 422/554 (76%), Gaps = 1/554 (0%) Query: 18 FLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFT 77 FL+ +RLLRGPWQAFERDVARLL+ GF+DVR++GGSGD GADV+GVKN E+WV+QCK T Sbjct: 4 FLDDRRLLRGPWQAFERDVARLLMHAGFDDVRVVGGSGDQGADVVGVKNGEIWVVQCKHT 63 Query: 78 TGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLL 137 T P+ AV +V ++ YY A+R+ +ATSR G ++A I R+ +GI + +L+PA L Sbjct: 64 TTAPPTKQAVQEVVDSGTYYGANRMLLATSRAIGGGVEAEIARYRRIGINVELLDPARLA 123 Query: 138 EMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQLFR 197 +++ PEY SRR+LR YQ EAV +F L +TGR QVVLATGLGKTVV+AE +A L+R Sbjct: 124 HLSQEVPEYAKSRRELRPYQQEAVSKFREGLTDTGRAQVVLATGLGKTVVMAEVVADLYR 183 Query: 198 DEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQSAV 257 D I R LVLA REL+ QLQ FW QLPKW+PTH L G E PS ++GITFATVQS + Sbjct: 184 DNLIRDNRVLVLADKRELIRQLQFGFWHQLPKWVPTHMLSGDETPSFYDGITFATVQSVI 243 Query: 258 SRLDELPDFGVVMIDEAHHVGSDTFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLGPPV 317 R+D+LP FG+V+IDEAHH+GS +FRR D + M+GG TATPWRGDG+DID LLG P+ Sbjct: 244 GRIDDLPSFGLVLIDEAHHIGSTSFRRALDALEPPMVGGATATPWRGDGFDIDELLGKPL 303 Query: 318 VRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEAARA 377 VR+GI++GLR+ +L E DYRLLADNIDW FV+ S ++YS+ QLNK LL+PTRDEEAAR Sbjct: 304 VRLGISDGLRQKYLSEVDYRLLADNIDWGFVQEISSHNYSLNQLNKKLLMPTRDEEAARH 363 Query: 378 IRDTFDKEFRRSAIIFCSSVTHATSFAAMLRLFGFRAEPITGDMTSRERDRTMAAFRKGS 437 I + F E RR I+F +V HA SFA LR +G RAE I+ +RERDR MA FR+G Sbjct: 364 IVEVFGGEKRRGGIVFSPTVDHAESFAGTLRGYGLRAEAISSRQEARERDRLMAMFRRGD 423 Query: 438 LDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVLDFVSDL 497 +DV+ + DLFNEGVDVPDVD++VFMR THSRRIFVQQLGRGLR+S K KV+V+DFV+DL Sbjct: 424 IDVLASVDLFNEGVDVPDVDLVVFMRATHSRRIFVQQLGRGLRLSHGKDKVIVMDFVTDL 483 Query: 498 RRLAEVVELEKAVRGDVERLRL-PGVIQFRDEGAGSFMLDWMKDQADLFTREGDPTLELP 556 RR+AEV+ELEKA G +ERL L +I FRD AG+FML+WMKDQADL REGD LE+P Sbjct: 484 RRVAEVIELEKASVGPLERLPLGHNLINFRDASAGNFMLEWMKDQADLILREGDAQLEIP 543 Query: 557 AFDFPAPHTWGGIQ 570 F+FPA GG+Q Sbjct: 544 KFEFPATPQPGGVQ 557 >ref|ZP_08235341.1| type III restriction protein res subunit [Streptomyces cf. griseus XylebKG-1] gb|EGE41255.1| type III restriction protein res subunit [Streptomyces griseus XylebKG-1] Length = 551 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/548 (42%), Positives = 311/548 (56%), Gaps = 13/548 (2%) Query: 18 FLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFT 77 FL+ L G + + R L GF DVR++ G+ D GAD+L V+N E WV Q K+ Sbjct: 2 FLSPAELRDGGPAGLTKALERTLWHLGFHDVRIVDGANDHGADLLAVRNREQWVFQSKWK 61 Query: 78 TGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLL 137 G VD + A +Y+AD+ +AT+ +A R A +G++I + ATL Sbjct: 62 AHGMADHAGVDDLERARTHYRADKAVLATNTNITATAEARRRDLAGVGVDIALWHGATLQ 121 Query: 138 EMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQLFR 197 + R PE PS +LR YQ EAV G L G +VLATGLGKTVV E I L Sbjct: 122 TIGERMPERVPSPYELRPYQAEAVQAIEGDLAADGSALLVLATGLGKTVVGGEVIGNLLA 181 Query: 198 DEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQSAV 257 P + LV+A R+LV+QL+ A W +PK +PT L G + P G+ ATV+SA+ Sbjct: 182 SR--PQAKVLVVAHMRDLVEQLEKALWRHIPKTVPTRLLTGEDKPRSLEGVVVATVESAL 239 Query: 258 --SRLDELPDFGVVMIDEAHHVG-SDTFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLG 314 +R PD +MIDE HHV + F + + + A GVTATPWRGD +DI G Sbjct: 240 AAARNGYRPDL--IMIDETHHVAETGRFAELLNLCSTAAQFGVTATPWRGDKFDITARFG 297 Query: 315 PPVVRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEA 374 P +GIAEG+ +GFL DYRL D +DW VR SR+ YSI LN+ L LP RDEE Sbjct: 298 YPSFSMGIAEGMAKGFLSAVDYRLYTDGVDWGAVREISRHGYSIKDLNRHLFLPQRDEEI 357 Query: 375 ARAIRDTFDKEFRRSAIIFCSSVTHATSFAAMLRLFG---FRAEPITGDMTSRERDRTMA 431 +R + + AI+FC ++ HA A +L + A + + R R+ + Sbjct: 358 VEHLRAAWRETVEPRAIVFCQTIEHAEHMAELLSVSDPQWVNASYLHSGLAKRHRNILLN 417 Query: 432 AFRKGSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVL 491 FR G + V+T D+FNEGVDVPDV++I F+RVTHSRRIFVQQLGRGLR+SP K+ + VL Sbjct: 418 EFRLGRVPVITCVDVFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRLSPNKKALKVL 477 Query: 492 DFVSDLRRLAEVVELEKAVRG-DVERLRLPGV--IQFRDEGAGSFMLDWMKDQADLFTRE 548 DFV+D+RR A + L + + + E L LP I+F+DE GS M W++D ADL T Sbjct: 478 DFVTDIRRAAAALNLRRTLEATEAEHLELPHTSRIEFQDETVGSLMDMWIQDAADLETAA 537 Query: 549 GDPTLELP 556 + L+ P Sbjct: 538 DEVRLQFP 545 >ref|YP_923472.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614] gb|ABL81785.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614] Length = 558 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/553 (42%), Positives = 322/553 (58%), Gaps = 18/553 (3%) Query: 18 FLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFT 77 FL + LL G + R L GF DVR+I G+GD GAD+L V++ E WV+QCKF+ Sbjct: 4 FLAPRALLAGGPRGLTLATERALWHLGFTDVRIIDGAGDEGADILAVRDREQWVLQCKFS 63 Query: 78 TGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLL 137 + G T VD A Y AD V T+ +A + +GI++ TL Sbjct: 64 SRGAVDRTGVDDAERARSRYGADHAVVVTNTSLNATAEARRKALGGIGIKVDAWAGPTLE 123 Query: 138 EMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQLFR 197 + + P PS+ +LR YQ+EA +R L +T R +VLATGLGKTVV E I + Sbjct: 124 AIYAKMPARVPSKYELRPYQLEAAERIQQDLEDTNRALLVLATGLGKTVVGGEVIRRHL- 182 Query: 198 DEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQSAV 257 E+ P R LV+A +ELV+QL+ A W L K +PT L G P+ + G+T AT+ S + Sbjct: 183 -ESHPDARILVVAHMKELVEQLEKALWRHLDKSVPTQVLTGDTRPTSFEGVTVATIDSVL 241 Query: 258 S--RLDELPDFGVVMIDEAHHVG-SDTFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLG 314 R D P ++MIDE HHVG + F ++ D+ +A GVTATPWRGD +DI G Sbjct: 242 GLVRTDWRP--SLIMIDETHHVGETGMFAQLLDECQDARQFGVTATPWRGDKFDITSRFG 299 Query: 315 PPVVRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEA 374 P +GIAEG+ G+L + DYR+ DN+DW FVR S + YSI +LNK L LP RDEE Sbjct: 300 QPSYSLGIAEGMADGYLAQVDYRMYVDNLDWDFVRHASEHGYSIKELNKALFLPQRDEEI 359 Query: 375 ARAIRDTFDKEFRRSAIIFCSSVTHATSFAAMLR---LFGFRAEPITGDMTSRERDRTMA 431 R + + AI+FC ++ HA A +L RA + ++ ++R + Sbjct: 360 VDEFRQAWREIRDPRAIVFCQTIEHAERMATLLAGADQSWRRASYLHSGLSRQQRQILLN 419 Query: 432 AFRKGSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVL 491 AFR G + ++T D+FNEGVDVPDV++I F+RVTHSRRIFVQQLGRGLR+ K + VL Sbjct: 420 AFRLGRVPIITCVDVFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRLREGKESLKVL 479 Query: 492 DFVSDLRRLAEVVELEK---AVR-GDVERLRLP----GVIQFRDEGAGSFMLDWMKDQAD 543 DFV+D+RR+A ++L++ A+R GD+E L LP I F DE AG+ + W++D AD Sbjct: 480 DFVTDVRRVAAGLDLKRTLAAIRGGDIEELSLPLPGGSQITFNDETAGTLLDYWIRDAAD 539 Query: 544 LFTREGDPTLELP 556 L T + L+ P Sbjct: 540 LETAADEVRLQFP 552 >ref|ZP_06412173.1| type III restriction protein res subunit [Frankia sp. EUN1f] gb|EFC84956.1| type III restriction protein res subunit [Frankia sp. EUN1f] Length = 557 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/546 (43%), Positives = 312/546 (57%), Gaps = 33/546 (6%) Query: 31 AFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFTTGGYPSPTAVDQV 90 AF R V R+L+ GF DV I GS D G D+L +N E WV Q K+ + +VD+V Sbjct: 18 AFTRQVERVLLHLGFTDVTNIDGSYDQGGDILARRNGERWVFQTKWKSTASVGAASVDEV 77 Query: 91 GEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLLEMA-------RRS 143 +A YY ADR V T+ R GP++ +GI + + L+++ R Sbjct: 78 VKAKDYYSADRAAVVTNSRFGPSVLRRRDELLRVGIRVELWSGKELVQLYGEERAFLNRL 137 Query: 144 PEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQLFRDEAIPG 203 PE P LR YQ EA R +L E R +VLATGLGKTV+ E IA+ A Sbjct: 138 PERP-----LRPYQSEAFQRVTDALDEHQRALLVLATGLGKTVIGGEVIARHLSRHA--A 190 Query: 204 GRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQSAVS--RLD 261 GR LV+A T+ELV+QL+ A W + K T L G P D GIT ATV SA+S R Sbjct: 191 GRILVVAHTKELVEQLERALWFHISKGTRTQLLTGDHRPDDLRGITCATVFSALSYVRSG 250 Query: 262 ELPDFGVVMIDEAHHVGSD-TFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLGPPVVRI 320 PD +V++DEAHHV + F + D +++ GVTATPWRGD YDI H G PV + Sbjct: 251 YRPD--LVVVDEAHHVAENGYFAELLDLLSDVPQLGVTATPWRGDRYDIRHRFGEPVYTL 308 Query: 321 GIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEAARAIRD 380 GI +G+R GFL E YRL ADNIDW FVR+ SRN+Y+I LN L + RDE AIRD Sbjct: 309 GIEDGMRLGFLAEVRYRLFADNIDWDFVRAASRNNYAIKDLNARLFVAERDE----AIRD 364 Query: 381 TFDKEFRRS----AIIFCSSVTHATSFAAML-RLFGFR-AEPITGDMTSRERDRTMAAFR 434 + + R+ ++FC ++ HA A +L ++ ++ AE + ++ RER + FR Sbjct: 365 RLIEAYERTPDPRIVVFCRTIEHAERMAILLDQVPQWKGAEAVHAELHRRERQLRLMRFR 424 Query: 435 KGSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVLDFV 494 G ++T D+ NEGVDVPDV++I F RVTHSRRIFVQQLGRGLR+ K V LDFV Sbjct: 425 AGDTPIITAVDILNEGVDVPDVNIICFARVTHSRRIFVQQLGRGLRLRQGKSHVEALDFV 484 Query: 495 SDLRRLAEVVELEKAVRGD-VERLRLPGV---IQFRDEGAGSFMLDWMKDQADLFTREGD 550 SD+RR+A V+ L + V D VE LRL +F D + M +W+KD A L T + Sbjct: 485 SDIRRIAAVLNLRERVSADEVETLRLSNTGTRFEFSDRAVENLMQEWIKDAASLETALDE 544 Query: 551 PTLELP 556 L+ P Sbjct: 545 AKLQFP 550