BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0005.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amidase [Herbaspi... 767 0.0 ref|YP_004754216.1| N-acetylmuramoyl-L-alanine amidase AmiC [Col... 715 0.0 ref|YP_001352154.1| N-acetylmuramoyl-L-alanine amidase [Janthino... 691 0.0 ref|YP_001098757.1| N-acetylmuramoyl-L-alanine amidase [Herminii... 686 0.0 ref|ZP_08276437.1| N-acetylmuramoyl-L-alanine amidase [Oxalobact... 662 0.0 >ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amidase [Herbaspirillum seropedicae SmR1] gb|ADJ62356.1| N-acetylmuramoyl-l-alanine amidase protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/459 (84%), Positives = 415/459 (90%), Gaps = 17/459 (3%) Query: 1 MPRSTEIRSKSVTSKTRRTILKAGGTLLVSVLTPLPALASQILAVRVWPSDDYTRVTLEN 60 MPRS EIRSK V SK+RRTILKAGG L VSV+TPLPALASQILAVRVWPSDDYTRVTLEN Sbjct: 1 MPRSPEIRSKPVKSKSRRTILKAGGALFVSVITPLPALASQILAVRVWPSDDYTRVTLEN 60 Query: 61 DSNLKVTHFIVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120 DS+LKVTHF+VKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV Sbjct: 61 DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120 Query: 121 FDLKDEIKPQVFTLEPVGEYKYRFVIDLYPANPPDPIAALIQKGNWPKDQQAEVRPPLAE 180 FDLKDEIKPQVFTL PVGEYKYRFVIDLYPANPPDPIAALIQKG+W K+ A PPLA+ Sbjct: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPANPPDPIAALIQKGDWNKESPAN--PPLAQ 178 Query: 181 A-----RPDP------KAAPQVQDEDPPFAAKAKPQDDTKLQLTRMITIALDPGHGGEDP 229 +PDP K P+ ++E P K P D+ ++QLTRMITIALDPGHGGEDP Sbjct: 179 GPVTPPKPDPAPLAEIKPQPEDKNERNP---KVVP-DEPRMQLTRMITIALDPGHGGEDP 234 Query: 230 GAIGSRGNREKDVVLSIAKRLKKKIEEQPNMRVMLTRDADFFVPLGMRVQKARKVQADLF 289 GA G+RGNREKDVVLSIAKRLK+KIE+ PNMRVMLTRDADFFVPLG RV KARKVQADLF Sbjct: 235 GATGARGNREKDVVLSIAKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLF 294 Query: 290 ISIHADAFVQPTARGSSVFALSEKGASSTAARWLANKENAADMIGGVNIKTHDKQLASVL 349 +SIHADAFVQPTARGSSVFALSEKGASSTAARWLANKEN+AD+IGGVNIKTHD+QLASVL Sbjct: 295 VSIHADAFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVL 354 Query: 350 LDLSTTAQINDSLRIGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNP 409 LDLSTTAQINDSLR+GNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNP Sbjct: 355 LDLSTTAQINDSLRVGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNP 414 Query: 410 EEEAKLTDNSYQDDMADAIMTGIKKYFSKNPPLAKNKLT 448 EEEAKLTD YQ+ MADAI+TGI+ YF+KNPPLAKNKLT Sbjct: 415 EEEAKLTDERYQEQMADAILTGIRNYFAKNPPLAKNKLT 453 >ref|YP_004754216.1| N-acetylmuramoyl-L-alanine amidase AmiC [Collimonas fungivorans Ter331] gb|AEK63393.1| N-acetylmuramoyl-L-alanine amidase AmiC precursor [Collimonas fungivorans Ter331] Length = 449 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/449 (77%), Positives = 397/449 (88%), Gaps = 1/449 (0%) Query: 1 MPRSTEIRSKSVTSKTRRTILKAGGTLLVSVLTPLPALASQILAVRVWPSDDYTRVTLEN 60 M RSTEI +K + SK RRTILKAGGTLL+SVL PL A A+QI+AVRVWP+DDYTRVTLEN Sbjct: 1 MSRSTEICTKPLKSKIRRTILKAGGTLLISVLAPLSARAAQIVAVRVWPADDYTRVTLEN 60 Query: 61 DSNLKVTHFIVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120 D+ LK THF+V+NP+R+VVDIEGI+LN TLK+LVAKIQPNDPYIKQVRVGQNRP+VVRLV Sbjct: 61 DAELKTTHFLVQNPDRMVVDIEGIELNPTLKELVAKIQPNDPYIKQVRVGQNRPNVVRLV 120 Query: 121 FDLKDEIKPQVFTLEPVGEYKYRFVIDLYPANPPDPIAALIQKGNWPKDQQAEVRPPLAE 180 FDLK+E+KPQVFTL PVG Y++R V DLYP NPPDPI A+I+KG WP E+ PP+A+ Sbjct: 121 FDLKEEVKPQVFTLAPVGGYQHRLVFDLYPVNPPDPIQAMIEKGEWPSANPGEIAPPVAQ 180 Query: 181 ARPDPKAAPQVQDEDPPF-AAKAKPQDDTKLQLTRMITIALDPGHGGEDPGAIGSRGNRE 239 +P+ K P +Q + A+ P+ D LTRMITIALDPGHGGEDPGA G GNRE Sbjct: 181 TKPEQKPTPPLQPQPEQPPVARIDPKPDRTTTLTRMITIALDPGHGGEDPGATGRGGNRE 240 Query: 240 KDVVLSIAKRLKKKIEEQPNMRVMLTRDADFFVPLGMRVQKARKVQADLFISIHADAFVQ 299 KDVVLSIAKRLK KIE+QPNMRVMLTRDADFFVPLG+RVQKARKVQADLF+SIHADAFV Sbjct: 241 KDVVLSIAKRLKAKIEQQPNMRVMLTRDADFFVPLGVRVQKARKVQADLFVSIHADAFVT 300 Query: 300 PTARGSSVFALSEKGASSTAARWLANKENAADMIGGVNIKTHDKQLASVLLDLSTTAQIN 359 PTARGSSVFALSEKGASSTAARWLANKEN+AD+IGG+NIK+HD+QLASVLLDLSTTAQIN Sbjct: 301 PTARGSSVFALSEKGASSTAARWLANKENSADLIGGINIKSHDRQLASVLLDLSTTAQIN 360 Query: 360 DSLRIGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDNS 419 DS+++G+AVL EIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEA+LTDN+ Sbjct: 361 DSMKLGSAVLSEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEARLTDNA 420 Query: 420 YQDDMADAIMTGIKKYFSKNPPLAKNKLT 448 YQD MADA++ GIKKYF+ NPPLA+N+LT Sbjct: 421 YQDQMADAVLKGIKKYFAHNPPLARNRLT 449 >ref|YP_001352154.1| N-acetylmuramoyl-L-alanine amidase [Janthinobacterium sp. Marseille] gb|ABR89062.1| N-acetylmuramoyl-L-alanine amidase [Janthinobacterium sp. Marseille] Length = 434 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/447 (75%), Positives = 382/447 (85%), Gaps = 14/447 (3%) Query: 1 MPRSTEIRSKSVTSKTRRTILKAGGTLLVSVLTPLPALASQILAVRVWPSDDYTRVTLEN 60 M STEIRSK V +K RRT+LKAGGTLL+S+ +PLPA ASQILAVRVWPS+DYTRVTLEN Sbjct: 1 MSESTEIRSKPVKAKVRRTVLKAGGTLLISLFSPLPAFASQILAVRVWPSEDYTRVTLEN 60 Query: 61 DSNLKVTHFIVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120 D+NLK HFI+K+PERLVVD+EGIDLN TLK L+AKIQPNDPYIKQVRVGQNRP VVRLV Sbjct: 61 DANLKTNHFIIKDPERLVVDVEGIDLNPTLKSLIAKIQPNDPYIKQVRVGQNRPGVVRLV 120 Query: 121 FDLKDEIKPQVFTLEPVGEYKYRFVIDLYPANPPDPIAALIQKGNWPKDQQAEVRPPLAE 180 FDLK+E+ PQVFTL PV +Y++R V DLYP NPPDPIAALI+KG W D+ E Sbjct: 121 FDLKEEVNPQVFTLAPVDKYQHRLVFDLYPVNPPDPIAALIEKGQWSLDKPNE------- 173 Query: 181 ARPDPKAAPQVQDEDPPFAAKAKPQDDTKLQLTRMITIALDPGHGGEDPGAIGSRGNREK 240 P P V + PPFA +P++D Q++RM+TIALDPGHGGEDPGA+G G+ EK Sbjct: 174 ----PTMPPPVAEVKPPFA---EPKNDRAPQVSRMLTIALDPGHGGEDPGAVGRGGSYEK 226 Query: 241 DVVLSIAKRLKKKIEEQPNMRVMLTRDADFFVPLGMRVQKARKVQADLFISIHADAFVQP 300 +VLSIAKRLK K+E+ PNMRVMLTRD D+FVPL +RVQKARKVQADLF+SIHADAFVQP Sbjct: 227 HIVLSIAKRLKAKLEQHPNMRVMLTRDGDYFVPLHVRVQKARKVQADLFVSIHADAFVQP 286 Query: 301 TARGSSVFALSEKGASSTAARWLANKENAADMIGGVNIKTHDKQLASVLLDLSTTAQIND 360 TA GSSVFALSEKGASSTAARWLANKENAAD+IGG NIK HDKQLASVLLDLSTTAQIND Sbjct: 287 TANGSSVFALSEKGASSTAARWLANKENAADLIGGTNIKNHDKQLASVLLDLSTTAQIND 346 Query: 361 SLRIGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDNSY 420 SLR+G AVL EIGG+N+LHK AVEQAGFAVLKAPDIPSILIETAFISNPEEEAKL D++Y Sbjct: 347 SLRLGKAVLNEIGGVNRLHKNAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLNDDAY 406 Query: 421 QDDMADAIMTGIKKYFSKNPPLAKNKL 447 QD MADA+ GI+KYF+KNPPLAK+++ Sbjct: 407 QDRMADAVAQGIRKYFAKNPPLAKSRM 433 >ref|YP_001098757.1| N-acetylmuramoyl-L-alanine amidase [Herminiimonas arsenicoxydans] emb|CAL60628.1| N-acetylmuramoyl-L-alanine amidase [Herminiimonas arsenicoxydans] Length = 433 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/447 (74%), Positives = 380/447 (85%), Gaps = 15/447 (3%) Query: 1 MPRSTEIRSKSVTSKTRRTILKAGGTLLVSVLTPLPALASQILAVRVWPSDDYTRVTLEN 60 M TEIRSKSV +K RRT+LKAGGTLL+S+ +PL ALASQILAVRVWP+D+YTRVTLEN Sbjct: 1 MSEPTEIRSKSVKAKVRRTVLKAGGTLLISLFSPLSALASQILAVRVWPADEYTRVTLEN 60 Query: 61 DSNLKVTHFIVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120 D+NLK HFI+KNPERLVVD+EGI+L TLK LVAKIQPNDPYIKQVRVGQNRP+VVRLV Sbjct: 61 DANLKTNHFIIKNPERLVVDVEGIELGPTLKSLVAKIQPNDPYIKQVRVGQNRPNVVRLV 120 Query: 121 FDLKDEIKPQVFTLEPVGEYKYRFVIDLYPANPPDPIAALIQKGNWPKDQQAEVRPPLAE 180 FDLK+E+ PQVFTL PVGEY++R V DLYP NPPDPIAALI+KG W D + PP Sbjct: 121 FDLKEEVNPQVFTLAPVGEYQHRLVFDLYPVNPPDPIAALIEKGQWSIDAPTDTLPP--- 177 Query: 181 ARPDPKAAPQVQDEDPPFAAKAKPQDDTKLQLTRMITIALDPGHGGEDPGAIGSRGNREK 240 V + PP+A +P+ D Q+ RM+TIALDPGHGGEDPGA+G G+ EK Sbjct: 178 ---------PVAEIKPPYA---EPKADRAPQVNRMLTIALDPGHGGEDPGAVGRGGSYEK 225 Query: 241 DVVLSIAKRLKKKIEEQPNMRVMLTRDADFFVPLGMRVQKARKVQADLFISIHADAFVQP 300 ++VL+IAKRLK K+E+ PNMRVMLTRD D+FVPL +RVQKARKVQADLF+SIHADAFVQP Sbjct: 226 NIVLAIAKRLKAKLEQHPNMRVMLTRDGDYFVPLHVRVQKARKVQADLFVSIHADAFVQP 285 Query: 301 TARGSSVFALSEKGASSTAARWLANKENAADMIGGVNIKTHDKQLASVLLDLSTTAQIND 360 TA GSSVFALSEKGASSTAARWLANKENAAD+IGG NIK HDKQLASVLLDLSTTAQIND Sbjct: 286 TANGSSVFALSEKGASSTAARWLANKENAADLIGGANIKNHDKQLASVLLDLSTTAQIND 345 Query: 361 SLRIGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDNSY 420 SL++G AVL EIGGIN+LHKGAVEQAGFAVLKAPDIPSILIETAFISNP EEA+L D++Y Sbjct: 346 SLKLGKAVLNEIGGINRLHKGAVEQAGFAVLKAPDIPSILIETAFISNPAEEARLNDDAY 405 Query: 421 QDDMADAIMTGIKKYFSKNPPLAKNKL 447 QD MADA+ GI+KYF+KNPPLAK K+ Sbjct: 406 QDRMADAVSQGIRKYFAKNPPLAKGKM 432 >ref|ZP_08276437.1| N-acetylmuramoyl-L-alanine amidase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30091.1| N-acetylmuramoyl-L-alanine amidase [Oxalobacteraceae bacterium IMCC9480] Length = 436 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/436 (73%), Positives = 386/436 (88%), Gaps = 5/436 (1%) Query: 17 RRTILKAGGTLLVSVLTPLPALASQILAVRVWPSDDYTRVTLENDSNLKVTHFIVKNPER 76 RRT+L+AGGTLL+SV+ P A A+QI+AVRVWP+DDYTRVTLENDS+LK THF++K+PER Sbjct: 2 RRTVLQAGGTLLLSVVAPGLARAAQIVAVRVWPADDYTRVTLENDSDLKATHFVIKDPER 61 Query: 77 LVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLVFDLKDEIKPQVFTLEP 136 LV+DIEG++LN+T+K L+AKIQ NDPYIKQVRVGQNRP+VVRLVFDLK E+ PQVFTL+P Sbjct: 62 LVIDIEGLELNATMKGLIAKIQSNDPYIKQVRVGQNRPNVVRLVFDLKAEVTPQVFTLKP 121 Query: 137 VGEYKYRFVIDLYPANPPDPIAALIQKGNWPKDQQAEVRPPLAEARPDPKAA----PQVQ 192 VG+Y+YR V DLYPA DPIAALI+KG+W KDQ+ + P+A+A P+ K + P+++ Sbjct: 122 VGDYQYRLVFDLYPAKELDPIAALIEKGDWSKDQKFDPSAPVAQAVPESKPSGRNDPRLK 181 Query: 193 DEDPPFAAKAKPQDDTKLQLTRMITIALDPGHGGEDPGAIGSRGNREKDVVLSIAKRLKK 252 DP A + +P+++ LTR++TIALDPGHGGEDPGA+G G+ EKDVVL+IAKRLK Sbjct: 182 FLDPNIA-RFEPREEKIPPLTRLLTIALDPGHGGEDPGAVGRNGSHEKDVVLAIAKRLKA 240 Query: 253 KIEEQPNMRVMLTRDADFFVPLGMRVQKARKVQADLFISIHADAFVQPTARGSSVFALSE 312 KIEEQPNMRVMLTRD D+FVPL +RV+KARKVQADLF+SIHADAFV+PTARGSSVFALSE Sbjct: 241 KIEEQPNMRVMLTRDGDYFVPLHVRVEKARKVQADLFVSIHADAFVEPTARGSSVFALSE 300 Query: 313 KGASSTAARWLANKENAADMIGGVNIKTHDKQLASVLLDLSTTAQINDSLRIGNAVLKEI 372 KGA+STAARW+ANKENAAD+IGGVNIK HD+QLASVLLDLSTTAQI+DS+++ AVL EI Sbjct: 301 KGATSTAARWMANKENAADLIGGVNIKDHDRQLASVLLDLSTTAQISDSMKLAKAVLGEI 360 Query: 373 GGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDNSYQDDMADAIMTGI 432 GGIN+LHKG+VEQAGFAVLKAPDIPSILIETAFISNPEEEAKL+DN+YQD MA AI+ GI Sbjct: 361 GGINRLHKGSVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLSDNAYQDQMAIAILKGI 420 Query: 433 KKYFSKNPPLAKNKLT 448 + YF+KNPPL+KN++T Sbjct: 421 RIYFAKNPPLSKNRMT 436