BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0035.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774577.1| transcription regulator protein [Herbaspiril... 167 3e-40 ref|YP_004754171.1| MarR family transcriptional regulator [Colli... 155 2e-36 ref|NP_638007.1| transcriptional regulator [Xanthomonas campestr... 101 3e-20 gb|AEL07879.1| transcriptional regulator [Xanthomonas campestris... 100 7e-20 ref|ZP_08182855.1| transcriptional regulator [Xanthomonas gardne... 95 4e-18 >ref|YP_003774577.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 145 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/130 (64%), Positives = 98/130 (75%) Query: 5 CTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDRSTLS 64 CTC LRRLTRRIT +YD HL L+I+QYSL+SR+GR G IAN+ LA +MGMDRSTLS Sbjct: 6 CTCAPLRRLTRRITVLYDHHLQDCELSITQYSLISRIGRKGPIANITLAQDMGMDRSTLS 65 Query: 65 RNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDGLLGE 124 R +KPLMAAGWI TVD+P D Q+DKRSF L LS+ G+AKL ARP W AQ EID LLG Sbjct: 66 RALKPLMAAGWIETVDLPADAQLDKRSFALQLSQDGRAKLEQARPYWRRAQDEIDRLLGP 125 Query: 125 DLHAALSGMI 134 DL + +I Sbjct: 126 DLARNFNDLI 135 >ref|YP_004754171.1| MarR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63348.1| transcriptional regulator, MarR family [Collimonas fungivorans Ter331] Length = 152 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/141 (51%), Positives = 99/141 (70%) Query: 1 MFNQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDR 60 M N+C+CT LR+LTR++T+IYD +L D LTISQYSLL+R+G++G I + LA MGMDR Sbjct: 4 MKNECSCTTLRQLTRKMTNIYDHYLAADELTISQYSLLARIGKYGPIGVIPLAHNMGMDR 63 Query: 61 STLSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDG 120 ST+SR +KPL+ AGWI TVD+P + DKRSFG+ LS G+ K ++PNW AQ I+ Sbjct: 64 STMSRTLKPLIGAGWIETVDLPLEMLTDKRSFGVRLSAEGERKWKQSKPNWRKAQDVINT 123 Query: 121 LLGEDLHAALSGMIGPXGFLF 141 +LG+ H AL ++ F Sbjct: 124 ILGDQTHHALMSLVDDANVKF 144 >ref|NP_638007.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_242545.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] ref|YP_001902907.1| transcriptional regulator, MarR family [Xanthomonas campestris pv. campestris str. B100] gb|AAM41931.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY48525.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] emb|CAP50851.1| transcriptional regulator, MarR family [Xanthomonas campestris pv. campestris] Length = 140 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 11/134 (8%) Query: 2 FNQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDRS 61 ++CTC LRR RR++ +YD L P L++++YS+L R+ S+ L A+ +GMDR+ Sbjct: 4 LSRCTCFHLRRAARRVSQLYDHALAPVGLSLNEYSILRRLEVAQSLGTL--ASTLGMDRT 61 Query: 62 TLSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDGL 121 TL+RN+KPL+AAGWI T D R + LS +G+ L ARP+W AAQ++++ L Sbjct: 62 TLTRNLKPLLAAGWITT-----QRGEDARQKWVRLSRSGRGLLVRARPHWHAAQVQLETL 116 Query: 122 LG----EDLHAALS 131 G LHA L+ Sbjct: 117 FGAAPTAQLHATLA 130 >gb|AEL07879.1| transcriptional regulator [Xanthomonas campestris pv. raphani 756C] Length = 140 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 7/133 (5%) Query: 2 FNQCTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDRS 61 + CTC +LRR RR++ +YD L P L+++++S+L R+ S+ L A+ +GMDR+ Sbjct: 4 LSHCTCFQLRRAARRVSQLYDHALAPVGLSLNEHSILRRLEVAQSLGTL--ASTLGMDRT 61 Query: 62 TLSRNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDGL 121 TL+RN+KPL+AAGWI T D R + LS +G+ L ARP+W AAQ++++ L Sbjct: 62 TLTRNLKPLLAAGWITT-----QRGEDARQKWVRLSRSGRGLLVRARPHWHAAQVQLETL 116 Query: 122 LGEDLHAALSGMI 134 G A L M+ Sbjct: 117 FGAAPTAQLHAML 129 >ref|ZP_08182855.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gb|EGD19511.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 142 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 73/120 (60%), Gaps = 7/120 (5%) Query: 5 CTCTRLRRLTRRITSIYDRHLLPDALTISQYSLLSRVGRHGSIANLRLAAEMGMDRSTLS 64 CTC LRR RR + +YDR L P L++++YS+L R+ S+ L A +GMDR+TL+ Sbjct: 7 CTCFHLRRAARRTSQLYDRALAPVGLSLNEYSILRRLDAAQSLGAL--AHTLGMDRTTLT 64 Query: 65 RNIKPLMAAGWIATVDMPPDEQVDKRSFGLGLSEAGQAKLAAARPNWVAAQLEIDGLLGE 124 RN+KPL+AAGWI T D R L LS +G+ L A P+W AAQ +++ L G Sbjct: 65 RNLKPLLAAGWIKT-----QRGEDARQKWLVLSRSGRGLLVRAFPHWQAAQRQLETLFGS 119