BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0032.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002553278.1| cbs domain-containing protein [Acidovorax eb...   112   2e-23
ref|YP_549010.1| signal transduction protein [Polaromonas sp. JS...   108   3e-22
ref|YP_986264.1| CBS domain-containing protein [Acidovorax sp. J...   108   3e-22
ref|YP_003775671.1| CBS domain-containing protein [Herbaspirillu...   107   4e-22
ref|YP_001978664.1| inosine-5'-monophosphate dehydrogenase [Rhiz...   107   8e-22

>ref|YP_002553278.1| cbs domain-containing protein [Acidovorax ebreus TPSY]
 gb|ACM33278.1| CBS domain containing protein [Acidovorax ebreus TPSY]
          Length = 157

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 84/114 (73%), Gaps = 2/114 (1%)

Query: 4   AAKLMDELDVGSLPVCDAGKLVGIVTDRDLVVRGLARHSSVDQLEVQELMSSEVAYCLEK 63
           AA+ M EL+VG+LPVCD  +LVG+VTDRD+V+RGLA   +  +L   E+MS EV YC E 
Sbjct: 24  AAQAMRELNVGALPVCDGERLVGMVTDRDMVLRGLAEERTHSRL--NEVMSREVYYCYED 81

Query: 64  QTVEEALEYMGGDQLRRLPVLNEEKQLVGIVTLGDIASKEEQPETDETLAEISS 117
           Q V+EA+  M   Q+RRLPV++ +++LVGIV+LGD+A+  ++ ++   + +ISS
Sbjct: 82  QPVDEAIASMRDMQVRRLPVVDRDQRLVGIVSLGDVATNVDERQSGTAIRDISS 135


>ref|YP_549010.1| signal transduction protein [Polaromonas sp. JS666]
 gb|ABE44112.1| putative signal transduction protein with CBS domains [Polaromonas
           sp. JS666]
          Length = 170

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 1   VKLAAKLMDELDVGSLPVCDAGKLVGIVTDRDLVVRGLARHSSVDQLEVQELMSSEVAYC 60
           V  AA+ MDEL+VG +PVCD  KLVG+VTDRD+VVRG+A+       ++ +LMS+ V   
Sbjct: 21  VTSAARAMDELNVGVIPVCDGEKLVGMVTDRDIVVRGVAQELDAKTTDLSDLMSTNVRTA 80

Query: 61  LEKQTVEEALEYMGGDQLRRLPVLNEEKQLVGIVTLGDIASKEEQPETD--ETLAEIS 116
            E + V+E L  M   Q+RRLPV++++ +LVGI++LGDIA+K+   + D   +L  IS
Sbjct: 81  RENEDVDEVLSEMAESQIRRLPVVDDQDRLVGIISLGDIAAKDPDKDADVAASLGNIS 138


>ref|YP_986264.1| CBS domain-containing protein [Acidovorax sp. JS42]
 gb|ABM42188.1| CBS domain containing protein [Acidovorax sp. JS42]
          Length = 157

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 83/114 (72%), Gaps = 2/114 (1%)

Query: 4   AAKLMDELDVGSLPVCDAGKLVGIVTDRDLVVRGLARHSSVDQLEVQELMSSEVAYCLEK 63
           AA+ M EL+VG+LPVC+  +LVG+VTDRD+V+RGLA   +  +L   E+M  EV YC E 
Sbjct: 24  AAQAMRELNVGALPVCNGERLVGMVTDRDMVLRGLAEERTHSRL--NEVMFREVYYCYED 81

Query: 64  QTVEEALEYMGGDQLRRLPVLNEEKQLVGIVTLGDIASKEEQPETDETLAEISS 117
           Q V+EA+  M   Q+RRLPV++ ++++VGIV+LGD+A+  ++ ++   + +ISS
Sbjct: 82  QPVDEAIASMRAMQVRRLPVVDRDQRVVGIVSLGDVATNVDERQSGTAIRDISS 135


>ref|YP_003775671.1| CBS domain-containing protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63763.1| CBS domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)

Query: 4   AAKLMDELDVGSLPVCDAG-KLVGIVTDRDLVVRGLARHSSVDQLEVQELMSSEVAYCLE 62
           AA+ M+ LDVG+LPVCD   +LVG+VTDRD+V+RG+AR    +   + E+MS +V +C E
Sbjct: 27  AAQAMEALDVGALPVCDGDQRLVGLVTDRDIVLRGVARKRLTETTPLTEVMSHDVLWCYE 86

Query: 63  KQTVEEALEYMGGDQLRRLPVLNEEKQLVGIVTLGDIASKEEQPETDETLAEIS 116
            + V++ L+ M   Q+RRLPV++ +K LVG+V+LGD+A+K +       LAEIS
Sbjct: 87  DEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSLGDVAAKTQNSGIAGALAEIS 140


>ref|YP_001978664.1| inosine-5'-monophosphate dehydrogenase [Rhizobium etli CIAT 652]
 gb|ACE91486.1| putative inosine-5'-monophosphate dehydrogenase protein [Rhizobium
           etli CIAT 652]
          Length = 145

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 5   AKLMDELDVGSLPVCDAGKLVGIVTDRDLVVRGLARHSSVDQLEVQELMSSEVAYCLEKQ 64
           A +M  LD G+LPV +  +LVG++TDRD+ +RG+A     D  +V+++MS++V YC + +
Sbjct: 24  AAMMGRLDAGALPVAENDRLVGMITDRDITIRGVAEGKGPDA-KVRDVMSTDVKYCFDDE 82

Query: 65  TVEEALEYMGGDQLRRLPVLNEEKQLVGIVTLGDIASKEEQPETDETLAEIS 116
            +E+ L  MG  Q+RRLPVLN  K+LVGI++LGD+A K E  ET   L+ IS
Sbjct: 83  DLEDVLHNMGDLQVRRLPVLNRSKRLVGIISLGDLAMKGETMETGRALSGIS 134