BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0024.p (715 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinoba... 335 2e-89 emb|CAX83917.1| Response regulator receiver modulated diguanylat... 330 6e-88 gb|EGW60159.1| diguanylate cyclase/phosphodiesterase with PAS/PA... 322 2e-85 gb|EGW60080.1| diguanylate cyclase/phosphodiesterase with PAS/PA... 321 3e-85 ref|YP_004353544.1| diguanylate cyclase/phosphodiesterase [Pseud... 321 4e-85 >ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] gb|ABR89471.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 190/423 (44%), Positives = 258/423 (60%), Gaps = 17/423 (4%) Query: 213 ENVLAFQAAHDPLTGLAHRGSFERRLKTM----ADQPHTV--VLGMIDRFERVVGGLGHA 266 E L A+HD LTGL +R + RL+ A H V VL +DRF+ V +GH Sbjct: 469 ETTLHRLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDRFKFVNDTMGHQ 528 Query: 267 FGDRLMQEMATRIKRAAERHGGEVFRLNGANVAILYKSHGDNVS--FQEALSSLQEYMRQ 324 GD L++ ++ R++ A+ R V RL G ++ GD S + + + E + + Sbjct: 529 AGDVLLKIISDRLQ-ASVRESDTVARLGGDEFVLVLPECGDGPSGYSSDVIQRIMEAVVK 587 Query: 325 PFEFGQHEIFSSMSMGGAEYPRDGAAPAAIAS-------LXADAGGDCFVQYSNALNTRA 377 P E F S SMG A YP DGA P + + + G + F Y+ A+N +A Sbjct: 588 PLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQA 647 Query: 378 QERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRRNG-ELISPADFIPLA 436 ERL +E +LRHAIE NEL LH+QPQ L +VG EALVRW ++ P FI LA Sbjct: 648 LERLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLA 707 Query: 437 EESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTTTLAESM 496 EE+GLI+PIG WVL ACRQAK W + IAVN+S RQF S L + TL E+ Sbjct: 708 EETGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQETG 767 Query: 497 IDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRFSIDKLK 556 ++ F+E+E+TE VM D+ER I L DL+ G+ L++DDFGTG+SSLAYLKRF ID LK Sbjct: 768 LEARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLK 827 Query: 557 IDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDEIQGYFY 616 ID+SF+R + N +DA+IV ++I+L H+L L+VIAEGVET +Q ++LRA GC+EIQGY++ Sbjct: 828 IDRSFVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYF 887 Query: 617 GRP 619 +P Sbjct: 888 CKP 890 >emb|CAX83917.1| Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) [uncultured bacterium] Length = 686 Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 189/429 (44%), Positives = 257/429 (59%), Gaps = 15/429 (3%) Query: 212 SENVLAFQAAHDPLTGLAHRGSFERRLK-TMADQPHT-----VVLGMIDRFERVVGGLGH 265 SE L F HD LTGL +R F RL + + H V+L +DRF+ V +GH Sbjct: 251 SEENLLFVTGHDALTGLPNRHLFHERLGFALEEAAHAGEMVWVLLLDLDRFKVVNETMGH 310 Query: 266 AFGDRLMQEMATRIKRAAERHGGEVFRLNGANVAILYKSHGDNVSFQEALSSLQEYMRQP 325 GD L+ E++ R+ + G + RL G ++ S G++ + ++ + ++ P Sbjct: 311 DVGDTLILEVSRRLASLSHVKG-SLGRLGGDEFGVIIASAGESQIAAQTAQAMLDVLKTP 369 Query: 326 FEFGQHEIFSSMSMGGAEYPRDGA-APAAIASLXA------DAGGDCFVQYSNALNTRAQ 378 F E F S+G YP DGA A + ++ A + G + F Y N +NTRA Sbjct: 370 FMLRDMEYFVGASIGIGVYPLDGADAKTLMQNIDAALYHAKERGRNNFQFYRNEMNTRAM 429 Query: 379 ERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRRNG-ELISPADFIPLAE 437 + +E LR A+E++E EL+FQPQ L+ RL G EAL+RW R G ++SP +FIP+AE Sbjct: 430 NLIRMETSLRVALEKDEFELYFQPQMHLSSGRLAGVEALIRWNRPGLGMVSPGEFIPVAE 489 Query: 438 ESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTTTLAESMI 497 E+GLI+P+G W L +AC++A W F +AVN+S QF P F+ VT TL S + Sbjct: 490 ETGLIIPMGLWALTDACQRAFSWISAGHAPFRVAVNLSGIQFEQPDFVNLVTQTLKASGL 549 Query: 498 DPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRFSIDKLKI 557 D ++ELE+TE I M DVE T+ L+ L G+ LAIDDFGTG+SSL YLKRF ID LKI Sbjct: 550 DHQWLELELTESIAMGDVEETLIKLKSLSSVGVALAIDDFGTGFSSLKYLKRFPIDTLKI 609 Query: 558 DQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDEIQGYFYG 617 DQSF+R+ + EDAAI++A I L H LGLSVIAEGVET Q E L++ GCDEIQGY Y Sbjct: 610 DQSFVRNCAEDVEDAAIIRAFIGLAHSLGLSVIAEGVETEEQLEFLKSHGCDEIQGYIYS 669 Query: 618 RPAVVPAVL 626 RP A++ Sbjct: 670 RPLSEAALM 678 >gb|EGW60159.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechlorosoma suillum PS] Length = 1281 Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 205/464 (44%), Positives = 267/464 (57%), Gaps = 24/464 (5%) Query: 188 VHIYSVGMLLTALFMMYHVWARFRSENVLAFQAAHDPLTGLAHRGSFERRL-KTMAD--- 243 VH G L + + + R +E + A HDPLTGL +R + E RL +++AD Sbjct: 819 VHDTQSGALTHYITLFSDITERKETEARIHHLAHHDPLTGLPNRFTLEARLEQSLADARR 878 Query: 244 QPHTVVLGM--IDRFERVVGGLGHAFGDRLMQEMATRIKRAAERHGGEVFRLNGAN-VAI 300 H V + +DRF+ + LGHA GD L+ E+A R+ R+A R V RL G V + Sbjct: 879 HGHKVAVMFMDLDRFKTINDSLGHAVGDSLLMEIAHRL-RSAVRESDTVARLGGDEFVVV 937 Query: 301 LYKSHGDNVSFQEALSSLQEYMRQPFEFGQHEIFSSMSMGGAEYPRDGAA------PAAI 354 L G N + A +++ R G HE+ +S S+G + YP DG A Sbjct: 938 LPDVEGANDAAHVAGKIIEDVARS-LRVGAHELHTSASIGISLYPDDGETVPTVMQNADT 996 Query: 355 ASLXADA-GGDCFVQYSNALNTRAQERLALEAQLRHAIERNELELHFQPQQGLTDDRLVG 413 A A A G + F +++A+N A ERL LE +LR A+ +ELELHFQPQ L DR+ G Sbjct: 997 AMYHAKAIGRNNFQFFASAMNRAATERLELERKLRQAMVNDELELHFQPQFALAADRVTG 1056 Query: 414 FEALVRWRRNGE-LISPADFIPLAEESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAV 472 EAL+RWR + LI P FIP+AEE+GLIV IGDWVL ACRQ K W + +AV Sbjct: 1057 VEALLRWRHPEDGLIPPDRFIPIAEETGLIVGIGDWVLQAACRQLKAWLDQGLPPLRMAV 1116 Query: 473 NISPRQFHHPSFLRRVTTTLAESMIDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTL 532 N+S RQ F RV L E+ + +ELEITE VM E I L+ L G+TL Sbjct: 1117 NLSTRQLKEKEFPSRVAAILQETGLPAVLLELEITESGVMERPEEAITTLQALNDMGVTL 1176 Query: 533 AIDDFGTGYSSLAYLKRFSIDKLKIDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAE 592 AIDDFGTGYSSL+YLK F ID+LKID+SF+R + + +DAAI + I L H LGL V+AE Sbjct: 1177 AIDDFGTGYSSLSYLKLFPIDRLKIDRSFVRDIERDPDDAAIARGTIALAHSLGLEVVAE 1236 Query: 593 GVETVTQRELLRAWGCDEIQGYFYGRPAVVPAVLRPAAAAGAVV 636 GVET Q ++L A GCDE+QGYF+ RP P AAA A + Sbjct: 1237 GVETSAQLDMLAADGCDEVQGYFFSRPL-------PLAAATAFL 1273 >gb|EGW60080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechlorosoma suillum PS] Length = 1158 Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 185/429 (43%), Positives = 257/429 (59%), Gaps = 17/429 (3%) Query: 206 VWARFRSENVLAFQAAHDPLTGLAHRGSFERRLK---TMADQPHTVVLGM---IDRFERV 259 V R R+E + F A HD LTGL +R RL+ +A++ + M +DRF+ + Sbjct: 718 VSERKRNEEHIRFLAEHDYLTGLPNRSLLHDRLQQAIALAERNSESLALMFIDLDRFKNI 777 Query: 260 VGGLGHAFGDRLMQEMATRIKRAAERHGGEVFRLNGANVAILYKSHGDNVSFQEALSSLQ 319 LGH GD+L+QE+ RI+ A R V R G IL S L Sbjct: 778 NDSLGHQVGDQLLQEVGRRIQ-ACVRSADTVSRPGGDEFIILLPSIETPQDAARVAEKLL 836 Query: 320 EYMRQPFEFGQHEIFSSMSMGGAEYPRDG--------AAPAAIASLXADAGGDCFVQYSN 371 E + +P++ G HE+ + S+G A +P DG A AA+ +AG D F ++ Sbjct: 837 ESLNRPYQLGGHELVITASIGIAVFPEDGRDFQTLVKNADAAM-YYSKEAGRDSFHFFTP 895 Query: 372 ALNTRAQERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRR-NGELISPA 430 +N R ERL+LE LR A+ER E L++QPQ + R++GFEAL+RW+ L+SPA Sbjct: 896 DMNARVFERLSLENSLRRALERQEFLLYYQPQVDMPSGRVIGFEALIRWQHPQMGLVSPA 955 Query: 431 DFIPLAEESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTT 490 FIP+AE+SGLIVPIG+WVL EACRQ + W + +AVNIS QF P F V Sbjct: 956 RFIPVAEDSGLIVPIGEWVLGEACRQNRAWQEQGMPAVPVAVNISALQFRQPQFEASVER 1015 Query: 491 TLAESMIDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRF 550 LAES ++P+++ELE+TE +++ + +LL+ L+ RG+ L+IDDFGTGYSSLAYLKR Sbjct: 1016 ALAESGLEPAWLELELTESMMLHQGQGATDLLDRLKARGVRLSIDDFGTGYSSLAYLKRL 1075 Query: 551 SIDKLKIDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDE 610 +DKLKIDQ+F+R + ++ AAI +I + H+LGLSVIAEGVET Q E L+A C Sbjct: 1076 PLDKLKIDQAFVRDIASDAGGAAITATIIQMAHNLGLSVIAEGVETEAQLEFLQAHDCAS 1135 Query: 611 IQGYFYGRP 619 QG+++ RP Sbjct: 1136 AQGFYFARP 1144 >ref|YP_004353544.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68540.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1007 Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 264/465 (56%), Gaps = 20/465 (4%) Query: 212 SENVLAFQAAHDPLTGLAHRGSFERRLKTMA------DQPHTVVLGMIDRFERVVGGLGH 265 +E + F HD LTGL +R E RLK ++ TVV +D+F+ V LGH Sbjct: 542 TEKRIRFMGDHDALTGLPNRTLLEDRLKQAMLYAQRYNRLVTVVFLDLDKFKLVNDSLGH 601 Query: 266 AFGDRLMQEMATRIKRAAERHGGEVFRLNGAN-VAILYKSHGDNVSFQEALSSLQEYMRQ 324 + GD L++ +A R+ R V RL G V IL+ D L +QE + + Sbjct: 602 SAGDELLKTVAQRLL-GCVRRTDTVVRLGGDEFVIILFDQPSDLDGVTPVLHKIQEAILR 660 Query: 325 PFEFGQHEIFSSMSMGGAEYPRDGAAPAAIASLXADA--------GGDCFVQYSNALNTR 376 P + G H + + SMG A YP DG+ + S ADA G + F Y++ +N + Sbjct: 661 PIQLGGHTLHVTCSMGLATYPADGSDTDTLLS-NADAAMYRAKELGRNSFQFYTSEMNNK 719 Query: 377 AQERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRR-NGELISPADFIPL 435 Q +LA++ LR A+ +E L +QPQ L +++G EAL+RW+ ++SP FIP Sbjct: 720 VQGKLAMQDGLRSALYNDEFLLLYQPQVDLQSGQIIGVEALIRWQHPELGMVSPIKFIPQ 779 Query: 436 AEESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTTTLAES 495 AEE+GLIVPIGDWV+ ACRQ K W ++VNIS RQF + RV L E+ Sbjct: 780 AEETGLIVPIGDWVIHTACRQNKAWQNAGWPPITMSVNISARQFIERDLIDRVMHALQET 839 Query: 496 MIDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRFSIDKL 555 +DP ++ELE+TE ++M+D+++ I ++ L+ G++L+IDDFGTGYSSLA LK F I +L Sbjct: 840 GLDPMYLELELTESLIMQDLQQAISKMKALQAMGISLSIDDFGTGYSSLAALKSFPIARL 899 Query: 556 KIDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDEIQGYF 615 KIDQSF+R L N D AI AVI+LGH L L VIAEGVET Q+ LR GCDEIQG+F Sbjct: 900 KIDQSFVRDLPDNENDKAIATAVISLGHKLNLKVIAEGVETEEQQTFLRDNGCDEIQGHF 959 Query: 616 YGRPAVVPAVLRPAAAAGAVVPAVL-RPAAIRHPAAGFPVRRTGP 659 + + + R +G P+ L P ++R R +GP Sbjct: 960 FSKAVSAEEISRLLRTSGVSEPSRLASPGSVRQKKRDVK-RPSGP 1003