BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0018.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774540.1| transcription regulator protein [Herbaspiril... 506 e-141 ref|YP_001893049.1| LysR family transcriptional regulator [Ralst... 397 e-109 ref|ZP_07674456.1| transcriptional regulator, LysR family [Ralst... 397 e-108 ref|YP_003749578.1| hth-type (hthlysr) transcriptional activator... 397 e-108 gb|AEG71665.1| hth-type (hthlysr) transcriptional activator [Ral... 397 e-108 >ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/304 (81%), Positives = 273/304 (89%), Gaps = 3/304 (0%) Query: 1 MIEPKDIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQG 60 +IEP+DIDLNLLVVFQEVFQ+RQISSVARRL LSQPAVSNALARLRR+F DELFVRTAQG Sbjct: 3 LIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQG 62 Query: 61 MQPTPFAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETC 120 MQPTPFA+QLA+PVAAAL V++ALN QE F+ SAR FTIAMTDVGEVYFMP LIE C Sbjct: 63 MQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEAC 122 Query: 121 ARLAPGIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSGALYQRRLFRQNYVSMFRQGH 180 AR APG+ ISTVRAGAIDLKSEMESGRVDLAIGAFDN+S ALYQRRLFRQ YVSMFR GH Sbjct: 123 ARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIGH 182 Query: 181 PLS--GK-TVTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPYIV 237 L G+ V++K+FLAA+HL+VSS ESPYDRINQNLEKAGI +V FRVPHFTAVPYIV Sbjct: 183 ALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIV 242 Query: 238 STTDLIVTVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFISE 297 S+T L+VTVP+KLAESAA PF L+YI+PPLRLPSLQTN+FWHRR+NQDEGN WLRGFISE Sbjct: 243 SSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFISE 302 Query: 298 HFAE 301 HFAE Sbjct: 303 HFAE 306 >ref|YP_001893049.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984575.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29622.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gb|ACS65903.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 305 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/302 (62%), Positives = 242/302 (80%), Gaps = 1/302 (0%) Query: 1 MIEPKDIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQG 60 M+ +D+DLNLLV+FQE+ ++++IS VA RL LSQPAVSNAL+RLR+TF DELFVRT +G Sbjct: 1 MLNLRDVDLNLLVLFQEILREKRISIVAERLGLSQPAVSNALSRLRQTFDDELFVRTPRG 60 Query: 61 MQPTPFAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETC 120 M PT A+QLA+PVA AL + +A ++ F AA S R FTIAM+DVGEVYFMPLL + C Sbjct: 61 MMPTALAEQLAEPVATALDTLQRAFGQRTHFDAATSTRTFTIAMSDVGEVYFMPLLAQFC 120 Query: 121 ARLAPGIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSG-ALYQRRLFRQNYVSMFRQG 179 A APG+++ T RAG D+K+EME+G +DLAIGAFD++SG +L+QRRLFRQ+YV+MFR+G Sbjct: 121 AEQAPGVRLDTQRAGGFDMKAEMEAGAIDLAIGAFDDLSGESLFQRRLFRQDYVTMFRRG 180 Query: 180 HPLSGKTVTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPYIVST 239 H LS +T++ F AA HLVV+S SPY+ I L+KAGI + F VPHF AVPYIVST Sbjct: 181 HALSEGKLTLERFRAASHLVVASSASPYNAIGPLLDKAGITQSARFSVPHFVAVPYIVST 240 Query: 240 TDLIVTVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFISEHF 299 TDL+VTVP+KLAE AA PF L+++ PPL+LP+LQTN+FWHRRF+QD GNQWLR +++ F Sbjct: 241 TDLVVTVPRKLAERAAPPFGLEFVAPPLKLPALQTNVFWHRRFHQDAGNQWLRNVVAQRF 300 Query: 300 AE 301 AE Sbjct: 301 AE 302 >ref|ZP_07674456.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|EFP67136.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 305 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/302 (61%), Positives = 242/302 (80%), Gaps = 1/302 (0%) Query: 1 MIEPKDIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQG 60 M+ +D+DLNLLV+FQE+ ++++IS VA RL LSQPAVSNAL+RLRRTF DELFVRT +G Sbjct: 1 MLNLRDVDLNLLVLFQEILREKRISVVAERLGLSQPAVSNALSRLRRTFDDELFVRTPRG 60 Query: 61 MQPTPFAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETC 120 M PT A+QLA+PVA AL + +A ++ F A S R FTIAM+DVGEVYFMP+L + C Sbjct: 61 MMPTALAEQLAEPVATALDTLQRAFGQRTHFEAGTSTRTFTIAMSDVGEVYFMPVLAQLC 120 Query: 121 ARLAPGIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSG-ALYQRRLFRQNYVSMFRQG 179 A APG++I T+RAG D+K+EME+G +DLAIGAFD++SG +++QRRLF+Q+YV+MFR+G Sbjct: 121 AEQAPGVRIDTLRAGGFDMKAEMEAGAIDLAIGAFDDLSGESIFQRRLFQQDYVTMFRRG 180 Query: 180 HPLSGKTVTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPYIVST 239 H LS +T++ F AA HLVV+S SPY+ I L+KAGI + F VPHF AVPYIVST Sbjct: 181 HALSEGRLTLERFRAASHLVVASSASPYNAIGPLLDKAGITQSARFSVPHFVAVPYIVST 240 Query: 240 TDLIVTVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFISEHF 299 TDL+VTVP+KLAE AA PF L+++ PPL+LP+LQTN+FWHRRF+QD GNQWLR +++ F Sbjct: 241 TDLVVTVPRKLAERAAPPFGLEFVAPPLKLPALQTNVFWHRRFHQDAGNQWLRNLVAQRF 300 Query: 300 AE 301 AE Sbjct: 301 AE 302 >ref|YP_003749578.1| hth-type (hthlysr) transcriptional activator [Ralstonia solanacearum PSI07] emb|CBJ34939.1| HTH-type (HTHLYSR) transcriptional activator [Ralstonia solanacearum PSI07] emb|CCA80262.1| HTH-type (HTHLYSR) transcriptional activator [blood disease bacterium R229] Length = 309 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/306 (62%), Positives = 242/306 (79%), Gaps = 5/306 (1%) Query: 1 MIEPKDIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQG 60 M+ +D+DLNLLVVFQE+ ++++IS VA RL LSQPAVSNALARLR+TF DELFVRT +G Sbjct: 1 MLNLRDVDLNLLVVFQEILREKRISVVAERLGLSQPAVSNALARLRQTFDDELFVRTPRG 60 Query: 61 MQPTPFAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETC 120 M PT A+QLADPV++AL + +AL ++ F AA SAR FT+AM+DVGEVYFMP+L + C Sbjct: 61 MMPTALAEQLADPVSSALDTLQRALGQRTHFDAASSARAFTVAMSDVGEVYFMPVLAQLC 120 Query: 121 ARLAPGIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSG-ALYQRRLFRQNYVSMFRQG 179 A APG++I TVRAGA D+K+ M SG +DLAIGAFD++SG +++QRRLFRQ+YV+MFR G Sbjct: 121 AEQAPGVRIDTVRAGAFDMKAGMASGAIDLAIGAFDDLSGESVFQRRLFRQDYVTMFRHG 180 Query: 180 HPLSGKT----VTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPY 235 HPL +T++ F AA HLVV+S SPY+ I L+KAGI + F VPHF AVPY Sbjct: 181 HPLEQAAQEGRLTLERFRAASHLVVASSASPYNAIGPLLDKAGISQSARFSVPHFVAVPY 240 Query: 236 IVSTTDLIVTVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFI 295 IVSTTDL+VTVP+KLAE AA PF L ++ PPL+LP+LQTN+FWHRRF+QD GNQWLR + Sbjct: 241 IVSTTDLVVTVPRKLAERAAPPFGLGFVPPPLKLPALQTNVFWHRRFHQDAGNQWLRNLV 300 Query: 296 SEHFAE 301 + FAE Sbjct: 301 ARRFAE 306 >gb|AEG71665.1| hth-type (hthlysr) transcriptional activator [Ralstonia solanacearum Po82] Length = 307 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/306 (62%), Positives = 244/306 (79%), Gaps = 5/306 (1%) Query: 1 MIEPKDIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQG 60 M+ +D+DLNLLVVFQE+ ++++I++VA RL LSQPAVSNALARLR+TF D+LFVRT +G Sbjct: 1 MLNLRDVDLNLLVVFQEILREKRIAAVAERLGLSQPAVSNALARLRQTFDDDLFVRTPRG 60 Query: 61 MQPTPFAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETC 120 M PT A+QLA+PV+AAL + +AL ++ F AA SAR FT+AM+DVGEVYFMP+L + C Sbjct: 61 MMPTALAEQLAEPVSAALDTLQRALGQRTHFDAASSARAFTVAMSDVGEVYFMPVLAQLC 120 Query: 121 ARLAPGIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSG-ALYQRRLFRQNYVSMFRQG 179 A APG++I TVRAG +D+K M SG +DLAIGAFD++SG +++QRRLFRQ+YV+MFR+G Sbjct: 121 AEQAPGVRIDTVRAGTLDMKGGMASGAIDLAIGAFDDLSGESVFQRRLFRQDYVTMFRRG 180 Query: 180 HPLS----GKTVTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPY 235 HPL +T++ F AA HLVV+S SPY+ I LEKAGI + F VPHF AVPY Sbjct: 181 HPLEQAAQAGGLTLERFRAASHLVVASSASPYNAIGPLLEKAGIAQSARFSVPHFVAVPY 240 Query: 236 IVSTTDLIVTVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFI 295 IVSTTDL+VTVP+KLAE AA PF L+++ PPL+LP+LQTN+FWHRRF+QD GNQWLR + Sbjct: 241 IVSTTDLVVTVPRKLAERAAPPFGLRFVPPPLKLPALQTNVFWHRRFHQDAGNQWLRNLV 300 Query: 296 SEHFAE 301 + FAE Sbjct: 301 ATRFAE 306